BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12670.1
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915235 jgi|Araly1|915235|Al_scaffold_0009_204 1613 0.0
> Ahg915235 jgi|Araly1|915235|Al_scaffold_0009_204
Length=1524
Score = 1613 bits (873), Expect = 0.0
Identities = 1338/1551 (86%), Gaps = 78/1551 (5%)
Strand=Plus/Plus
Query 330 ATGCTGACTGACAAGTCTAGGAAGGGATGTAGAGAGAGTTTAGGAGGAGTAGATGTGGGT 389
||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1 ATGGTGAGTGACAAGTCTAGGAAGGGATGTAGAGAGAGTCTAGGAGGAGTAGATTTGGGT 60
Query 390 TTAATGATGGAGAAAGAAGCTGGAGGTGTTGAGAATGTAGTGGAGGTTAATGTTTCTGGA 449
|| || ||||||||||||||||||||||| ||||| |||||||||||||||| || |||
Sbjct 61 TTTATTATGGAGAAAGAAGCTGGAGGTGTCCAGAATTTAGTGGAGGTTAATGTATCAGGA 120
Query 450 -GC---A--AG-----T-GGTA-TGG-----TTAGTGGGAAGAGAAGGGAAGGTGATGGA 491
|| | || | | | ||| ||| |||||| | ||| ||||||||||||
Sbjct 121 GGCAGAACTAGAACATTAGCAAGTGGTAATCTTACTGGGAATATAAGAGAAGGTGATGGA 180
Query 492 TTAAACAATAAATGGATAGTGATCGAGAAGAGTCAGAAAATGCAAAAAGTTGCTGCTGAA 551
||||||| |||||| || || || ||||||| ||||| ||||||| ||||||| ||| |
Sbjct 181 TTAAACAGTAAATGCATGGTAATGGAGAAGAATCAGATAATGCAAGAAGTTGCGGCTCAG 240
Query 552 ACTCATTCTCGGGAAAATTCTAAGGCTGATGATATTGAT-TCGGATAAGGGAAGAAAGCA 610
||||||||||||| ||| ||||||| ||||||| |||| | |||| |||||||| ||||
Sbjct 241 ACTCATTCTCGGGGAAAGTCTAAGGGTGATGATGCTGATGT-GGATGAGGGAAGACAGCA 299
Query 611 GCGAGGAAGATTTAATGAGA-AGAATTATGAAA-TTTCATATGCGTGC-ATTTCTAATGC 667
|||||||||||| | ||||| | ||| |||||| ||| ||| |||| || | ||||||
Sbjct 300 GCGAGGAAGATTGAGTGAGATA-AATCATGAAACTTT-GGATGTGTGCAATGT-TAATGC 356
Query 668 AGGTGAGGGAAGAAAGGGAAGGGTAAGAAGAGGTAATGAGAAAAATCAT--CAA-GCACC 724
|||||||||||||| || || |||||||| |||||| || ||| || | | |
Sbjct 357 GGGTGAGGGAAGAAA--TAA-GG---CAAGAGGTAGTGAGAAGAAGCATGGAAAGGTA-C 409
Query 725 AGAAGCGCACAGTAT-TGATGTTGGTGGGGAAAGAAAGCGA-CAGAGAAGATGCGATGAT 782
|||||| || | | |||||| |||| ||||||||||| | ||||||||||| ||||||
Sbjct 410 --AAGCGCGCAAT-TCTGATGTAGGTGAGGAAAGAAAGC-AGCAGAGAAGATGTGATGAT 465
Query 783 ATAAACCATGAAAAAGCACAACCGCACAGTTTTGCTGTTGGTATCAAAACAAAAGAGAAG 842
|| || ||||||| ||||||| |||||||||||| ||| ||| |||||||| ||||| |
Sbjct 466 ATTAATCATGAAACAGCACAAGCGCACAGTTTTGTTGTGGGTGTCAAAACACGAGAGACG 525
Query 843 AGGAGATACAGTGAGAAGAACCAGCAAAACAAAACAGTTGCAACTACTCATGAACACGAC 902
|||||||||||||||||||||||||||| ||||| ||||||| |||||||| || | |
Sbjct 526 AGGAGATACAGTGAGAAGAACCAGCAAACCAAAAGAGTTGCAGGAACTCATGAGCAGGCC 585
Query 903 GTC-TTAACTAATGATGGAA-GAACAGAAGCCCGCGATTCTGATTTCGGTGAGGGAAGAA 960
||| ||| | || ||| || ||||| |||| | ||||||||||| |||||||||||||
Sbjct 586 GTCTTTATC-AACGAT-AAAGGAACACAAGCTTGTGATTCTGATTTGGGTGAGGGAAGAA 643
Query 961 GTGGGCAAGGATGTTTCCATGAGAATAACCAGCAAACGAAAGTGTCGTCTACTGAAAGAT 1020
||||||||| || |||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 644 GTGGGCAAGAATATTTCCATGAGAACAACCAGCAAAAGAAAGTGTCATCTACTGAAAGAT 703
Query 1021 GCGAGCAGGAAATCCCTAGGACCAATAAAAGAGTGTCACTCGGTTCTGGATTAGGGGAGG 1080
| |||| ||||||||||| ||||||||||||||| | ||| ||||||||||||||
Sbjct 704 GTGAGC------TCCCTAGGACCGATAAAAGAGTGTCACACAGTTGTGGATTAGGGGAGG 757
Query 1081 GGCGATATCGGGA-GGGAAGACATATTGAAAAGAATCAGCATACCGAAACTGTTAAAACT 1139
|| || || | || ||| ||||||||||||||||| ||||||||||||||| || |||||
Sbjct 758 GGAGAGATTGTGATGGG-AGACATATTGAAAAGAACCAGCATACCGAAACTATTGAAACT 816
Query 1140 GAAACTCAT-GGGAAGGAAGT-TTCTAAGGATAGGAAGAGAAAGCGGGAAAGAGGAGTGG 1197
||||||| | ||||||||||| || |||||||| ||||| |||||||||| |||||| ||
Sbjct 817 GAAACTC-TGGGGAAGGAAGTGTT-TAAGGATATGAAGAAAAAGCGGGAACGAGGAGCGG 874
Query 1198 AAAGAGATGGGGATGAGTTCTATTTGGCGGAGAATCAAGACAGACAATGCCAAGCTGATA 1257
| |||||||| |||||||| ||||| |||||||||||||||||||| | |||| ||||||
Sbjct 875 AGAGAGATGGAGATGAGTTTTATTTCGCGGAGAATCAAGACAGACAGTACCAACCTGATA 934
Query 1258 TGAGAAATGATGATGTGGCCTTCAATAAGCAAGCGACTGGTTTCAGCACAGTTGAACAAG 1317
||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 935 TGAGAAACGATGATGTGGCCTTCAATAAGCAAGAGACTTGTTTCAGCACAGATGAACAAG 994
Query 1318 TAGAGCGAAAGTCTGTATCATCTATTTCATCTCCGGAGTCTACAAACAATGTTAACGACC 1377
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 995 AAGATCGAAAGTCTGTATCGTCTATTTCATCTCCGGAGTCTACAAACAATGTTAAGGACC 1054
Query 1378 CTAATGTTGCTTTTCAAGAGTTAGCTTTGATCATCCACCCTAAGGCTGGTGTACAAGAAC 1437
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 CTAATGTAGCTTCTCAAGAGTTAGCTTTGATCATCCACCCTAAGGCTGGTGTACAAGAAC 1114
Query 1438 AACCTATCGAAGCACGACCT-TTACGCTCTGTCTCTTCGAAGAAACCATCTTTTCAACCT 1496
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 1115 GACCTATCGAAGCACGACCTCTT-TGCTCTGTCTCTTCAAAGAAACCATCTTTTCAACCT 1173
Query 1497 GAAAAATACGGACACAAAAGTTACCTGGAGAAGAATGGACCTGCGTCTAATGATCCCGCA 1556
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 1174 GAAAAATACGGACACAAAAGTTACCTGGAGAAGAATGGAACTACGTCTAATGATCCCGGA 1233
Query 1557 CAAAG----T--GCT--A--CA-----AAAA---GGAAAAGACGATTTTGGACGCTGGCA 1598
||||| | | | | || |||| ||||||||| ||||||||||| ||||
Sbjct 1234 CAAAGGAAGTTTGTTTTATGCAGTGCTAAAAAACGGAAAAGACTATTTTGGACGCAGGCA 1293
Query 1599 GAAGTAGAGATGCTTAGGGTTGGTGTGCAGAAATTCCCTGGCGAGAGGAATATTCCATGG 1658
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1294 GAAGAAGAGATGCTTAGGGTTGGTGTGCAGAAATTCCCCGGCGAGAGGAATATTCCATGG 1353
Query 1659 CGCAAAATCTTGCAATTTGGTCGGGATGTGTTTCATGATGAACGGGCTCCAAGCGACCTC 1718
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1354 CGCAAAATCTTGGAATTTGGTCGGGATGTGTTTCACGATGAACGGGCTCCAAGCGACCTC 1413
Query 1719 AAGGACAAGTGGAAGACGTTAAACAAAATTCCTTCTGACACGGGGAAATGGGTAAGCCTT 1778
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||
Sbjct 1414 AAGGACAAGTGGAAGACGTTGAACAAAATGCCTTCTGACACGGGGAAATGGGTAAACCTT 1473
Query 1779 TCAACTGAAAGACAACCGAATTACTATGTGTCTGAAGTTAGTTCTGAATGA 1829
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TCAACTGAAAGACAACCGAATTACTATGTGTCTGAAGTTAGTTCTGAATGA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5