BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12680.1
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497147 jgi|Araly1|497147|fgenesh2_kg.9__112__AT4G12680.1 2787 0.0
> Ahg497147 jgi|Araly1|497147|fgenesh2_kg.9__112__AT4G12680.1
Length=1770
Score = 2787 bits (1509), Expect = 0.0
Identities = 1679/1763 (95%), Gaps = 4/1763 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGTTCCCAAAGGATTCTTTGAGAAACTGTGGAGTTTTGTCTCTTTTCTTCCTTAC 60
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAAGTTCCCAAAGGTTTCTTTGAGAAACTATGGAGTTTTGTCTCTTTTCTTCCTTAC 60
Query 61 TTCTTCCTCTTGCTGCTCCTTGGCGTCACCAAGGCCCTGATTATTGGTCCAATATCATCT 120
||||||||||||||||| || ||| ||||||||||||||||| |||||||| | ||||||
Sbjct 61 TTCTTCCTCTTGCTGCTTCTCGGCCTCACCAAGGCCCTGATTGTTGGTCCAGTTTCATCT 120
Query 121 GCTATAATTTTGGTTGGCAATTCATGTGTCATCATTGGCCTTTGGCCAGCACATTTCATT 180
|||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 121 GCTATAATTTTGATTGGGAATTCAACTGTAATCATTGGCCTTTGGCCAGCACATTTCGTT 180
Query 181 TGGACCTACTACTGTTTGGCAAGAACCAAGAGAATAGGGCTGGTTTTGAAGACCTTGGCA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TGGACCTACTACTGTTTGGCAAGAACAAAGAGAATAGGGCTGGTTTTGAAGACCTTGGCA 240
Query 241 TTGGTATTATTTCCACTGCCTTTGCTCCTCTGGCCAGTTGCTGGTATAGTAGGAAGTCTC 300
||| |||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 241 TTGATATTGTTTCCACTACCTTTACTCCTCTGGCCAGTTACTGGTATAGTAGGAAGTCTC 300
Query 301 TTCGGTGGAATCGCCTACGGGTTTTTCACGCCTCTTATGGCTACATTCGAGGCTGTAGGA 360
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TTCGGCGGAATCGCCTACGGGTTTTTCACTCCTCTTATGGCTACATTCGAGGCTGTAGGA 360
Query 361 GAGTCTGTTACTAGCAAATGCTACCATTGCTTTGTTGATGGTTCGTTCTCCACTATTAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGTCTGTTACTAGCAAATGCTACCATTGCTTTGTTGATGGTTCGTTCTCCACTATTAAA 420
Query 421 GGGAGTTGTACTGTGGTTACAGACTTCACAGATTTCTGCTTCCATTCTTACTTCTCCTAC 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGGAGTTGTACTGTAGTTACAGACTTCACAGATTTCTGCTTCCATTCTTACTTCTCCTAC 480
Query 481 ATGGATGAGTTAAGAGAAATGGTTTCGGCCGATGTTGAACCCTTAGAGATAAAGTTGTCT 540
||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct 481 ATGGACGAGTTAAGAGAAATGGTTTCCGCCGATGTTGAACCTTTAGAGATAAGGTTGTCT 540
Query 541 CGGCTACCTAGTTGTCTCCTTGCTAGTCTCATAGGTGTGATGGTAGATGTTCTTCTAATA 600
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||
Sbjct 541 CGGCTACCTAGTTGTCTGCTTGCTAGTCTCATAGGTGTGGTGGTAGATGTTCTTCTGATA 600
Query 601 ACAGCTGTCGCTGTTTACAAAAGCCCATACATGTTACTCAAAGGATGGAAGAGGCTATTG 660
|||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 601 ACAGCTGTTGCTCTTTACAAAAGCCCATATATGTTGCTCAAAGGATGGAAGAGGCTATTG 660
Query 661 GAAGACCTTGTTGGTAGAGAGGGCCCATTCCTAGAGAGTGTCTGTGTTCCATTTGCAGGT 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 GAAGACCTTGTTGGTAGAGAGGGCCCATTCCTAGAGACTGTCTGTGTTCCATTTGCAGGT 720
Query 721 CTTGCCATATTGCTATGGCCACTGGCTGTCGCGGGAGCTGTAATAGCTTCAGTTTTATCC 780
||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 721 CTTGCCATATTGCTATGGCCACTGGCTGTCGTGGGAGCCGTAATAGCTTCAGTGTTATCC 780
Query 781 AGCTTCTTTCTTGGACTGTACAGTGGAGTCATCGTTCATCAGGAGGACTCTTTCAGAATG 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGTTTCTTTCTTGGACTGTACAGTGGAGTCATCGTTCATCAGGAGGACTCTTTCAGAATG 840
Query 841 GGACTTAACTATATAATTGCTGCGGTCTCACTGTTTGACGAATATGTAAATGATTTACTC 900
|| ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 841 GGGCTTAACTATATAATTGCTGCGGTCTCACTGTATGATGAGTATGTAAATGATTTACTC 900
Query 901 TATTTGAGAGAAGGAACTAGCCTGCCGAGGCCTTGCTATAGGACGAAAACAGAGACTGTT 960
|||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||| |
Sbjct 901 TATTTGAGAGAAGGAACTCGCCTGCCAAGGCCTTGCTATAGAACGAAAATAGAGACTGGT 960
Query 961 CATGGGAAAAGAATATTAGGAGAGAGTAAGAACGTTGATCTCAAGAGCAAAAGAAGCAGC 1020
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CATGGGAAAAGAATATTAGTAGAGAGTAAGAACGTTGATCTCAAGAGCAAAAGAAGCAGC 1020
Query 1021 TCCCTGGGTTCAAAGCTTGTTTCAGAACAGTCGAGGACACTGAAAAAAGCAATTACACTA 1080
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 TCCCTGGCTTCAAAGCTTGTTTCAGAACAGTCGAGGACACTGAAAAAAGCAATAACACTA 1080
Query 1081 TATAAACCAGTTCAGGTATGGGAATGGTTGTTTAAGTCGTGTGAGGTGAATGGGAGGATA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 TATAAACCAGTTCAGGTATGGGAATGGTTGTTTAAGTCGTGTGAGGTGAACGGGAGGATA 1140
Query 1141 CTTCTTCGCGATGGCTTGATAGATGTGAAGGATGTAGAGGAGTGTCTTGTCAAGGGTAAT 1200
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1141 CTTCTTCGCGATGGCTTGATAGATGTGAAGGATGTTGAGGAATGTCTTGTCAAGGGTAAT 1200
Query 1201 TCTAAGAAGCTCTATATCAAACTACCCGCGTGGACGGTGTTACAGTGTCTCCTTGCATCG 1260
| ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 1201 TGTAAGAAGCTCTATATCAAACTACCCGCTTGGACAGTGTTACAATGTCTCCTTGCATCG 1260
Query 1261 GCTAAATCGAACTCATCTGGGTTGGTGATCACTGATGGCGTGGAGCTTACAGAACTAAAC 1320
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTAAATCGAACTCCTCTGGGTTGGTGATCACTGATGGCGTGGAGCTTACAGAACTAAAC 1320
Query 1321 AGCCCAAGAGATAAAGTATTTGTGTGGCT-AGTTGGACCCTTACTGATAATGAAGGAGCA 1379
|||||| | || ||||||||||||||||| | |||| || ||||||||||| ||||||||
Sbjct 1321 AGCCCACGTGACAAAGTATTTGTGTGGCTCA-TTGGGCCTTTACTGATAATAAAGGAGCA 1379
Query 1380 GATAAAAAACCTGAAGCTTACTG-AGGATGAAGAGTTTTGTCTGAGGAAATTGGTAATGG 1438
|||||| ||||||||||| |||| || |||||||||||||||| ||||||||||||||||
Sbjct 1380 GATAAAGAACCTGAAGCTGACTGCAG-ATGAAGAGTTTTGTCTAAGGAAATTGGTAATGG 1438
Query 1439 TATGCAAAAATGAAAGAACCGAGGACTGGGACAACACCGGGTTCCCGTCAAGTGATACAG 1498
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1439 TATGCAAAAATGAAAGAACCGAGGACTGGGATAGCACCGGGTTCCCGTCAAGTGATACAG 1498
Query 1499 TAAGAAAAGCACAATTGCAAGCCATAATCAGAAGGCTGCAAGGAATGGTAGCATCAATGT 1558
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1499 TAAGAAAAGCACAATTGCAAGCCATAATAAGAAGGCTGCAAGGAATGGTGGCATCAATGT 1558
Query 1559 CTAGAATACCAACGTTTCGACGCAGATTCATGAACTTGGTTAAAGTGTTGTACATAGAAG 1618
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CTAGAATACCGACGTTTCGACGCAGATTCATGAACTTGGTTAAAGTGTTGTACATAGAAG 1618
Query 1619 CTCTTGAAATGGGTGCATCAGGTAATCGAGCTGGTGGGATACTCAAACCCAACAGCGACC 1678
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1619 CTCTTGAAATGGGTGTGTCAGGTAATCGAGCTGGTGGGATCCTCAAACCCAACAGCCACC 1678
Query 1679 AAACAGGAAATCTGGATCGGACTGAAACACCGGACATGGATGTTGTCTAAGTAGTTATGA 1738
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1679 AAACAGGAAATCTGGATCGGACTGAAACACCGGACATGGATGTTGTATAAGTAGTTATGG 1738
Query 1739 TATCTTGTCTTTTTCCTTCTTCC 1761
|||||| ||||||||||||||||
Sbjct 1739 TATCTTATCTTTTTCCTTCTTCC 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71762021580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5