BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12690.1 Length=1409 Score E Sequences producing significant alignments: (Bits) Value Ahg497148 jgi|Araly1|497148|fgenesh2_kg.9__113__AT4G12690.1 1465 0.0 Ahg480071 jgi|Araly1|480071|fgenesh2_kg.3__2772__AT2G04220.1 604 4e-172 > Ahg497148 jgi|Araly1|497148|fgenesh2_kg.9__113__AT4G12690.1 Length=1036 Score = 1465 bits (793), Expect = 0.0 Identities = 976/1059 (92%), Gaps = 33/1059 (3%) Strand=Plus/Plus Query 66 GACTCAGAGATCAACAAAACCTAgtttttgaatttgtttcaatttttctcaaattactct 125 ||||||| ||||||||||||| || |||| ||| |||| || |||||||||||| Sbjct 1 GACTCAGGGATCAACAAAACCCAG-TTTT---TTT-TTTC-----TTGTCAAATTACTCT 50 Query 126 gtttttgagatctctgtttt---C-G---T-TA-AATTATGTCTTTGAGGTCAGAATCTT 176 | |||||||||||||||||| | | | || ||||||||||||||| |||||||||| Sbjct 51 G-TTTTGAGATCTCTGTTTTAACCGGCTTTGTAGAATTATGTCTTTGAGATCAGAATCTT 109 Query 177 CAACGGCAGAGAAGATAACAGAGGATCCGGTGACGTATAAGACAGCACAAAGCAGCGTGA 236 ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 110 CAACGGCAGAGAAGATAACAGAGGATCCGCTGACGTATAAGACGGCTCAAAGCAGCGTGA 169 Query 237 CGTGCATCTACCAAGCACATATGGTTGGATTCTGGAGAAACGTTAGGGTTCTATGGTCTA 296 ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct 170 CGTGCATCTACCAAGCACACATGGTTGGTTTCTGGAGAAACGTTAGGGTTCTTTGGTCTA 229 Query 297 AAAATCTCATGAACCATTCCTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATT 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 AAAATCTCATGAACCATTCCTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATT 289 Query 357 ACTGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGTACAAGAAAGGTTACAAATCGT 416 |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| Sbjct 290 ACTGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGAATAAGAAAGGATACAAATCGT 349 Query 417 TTGAGGTCGAAGGAAACCAAGTAGATGTCTATTGGGATTTTAGGTCTGCGAAATTCAACG 476 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 350 TTGAGGTCGAAGGAAACCAAGTAGATGTGTATTGGGATTTTAGGTCTGCTAAATTCAATG 409 Query 477 GCGGGCCTGAGCCGAGCTCCGATTTTTACGTGGCGCTTGTATCCGAGGAAGAGGTTGTTT 536 ||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||| Sbjct 410 GCGGGCCTGAGCCGAGCTCGGACTTTTACGTGGCGCTTGTATCGGAGGAGGAGGTTGTTT 469 Query 537 TGTTGTTGGGTGATCACAAGAAGAAAGCTTTTAAGAGGACTAAATCTAGACCTTCCTTGG 596 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 470 TGTTGTTAGGTGATCACAAGAAGAAAGCTTTTAAGAGAACTAAATCTAGACCTTCTTTGG 529 Query 597 TTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGATTTTTTCGACTA 656 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 530 TTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGAGTTTTTCGACTA 589 Query 657 GGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCTACCGGGG 716 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 590 GGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCGACGGGGG 649 Query 717 CGAAAGAACCAGAGATGTGGATTAGCGTAGATGGGATCGTTTTGGTTCAGGTGAGAAATC 776 |||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 650 CGAAGGATCCAGAGATGTGGATTAGCGTGGATGGGATAGTTTTGGTTCAGGTGAGAAATC 709 Query 777 TGCAGTGGAAATTTAGAGGGAACCAGACTGTTTTGGTTGATAAAGAACCTGTTCAAGTGT 836 ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 710 TGCAGTGGAAATTCAGAGGGAATCAGACGGTTTTGGTTGATAAAGAACCTGTTCAAGTGT 769 Query 837 TTTGGGATGTGTATGATTGGTTGTTCAGCACCCCCGGTACGGGGCACGGCTTGTTCATCT 896 ||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||| Sbjct 770 TTTGGGATGTGTATGATTGGTTGTTCAGCTCACCCGGTACAGGTCACGGCTTGTTCATCT 829 Query 897 TTAAACCGGAGAGCGGTGAAAGCGAAACGAGCAACGAAACCAA-GAATTGCAGTGcttct 955 |||||||||||||||||||||||||||||||||| | |||||| || | | |||| || | Sbjct 830 TTAAACCGGAGAGCGGTGAAAGCGAAACGAGCAATGGAACCAAAGA-TAGTAGTG-TT-T 886 Query 956 tcttcttcttcttcGTCGGAGTTTTGTCTCTTTCTTTATGCTTGGAAATTGGAGTAAGTC 1015 ||||||| ||| | | |||||||| || ||||||||||||||||||||||||||| Sbjct 887 -CTTCTTCGTCT--G----ATTTTTGTCTATTCCTTTATGCTTGGAAATTGGAGTAAGTC 939 Query 1016 TAAATGTTTTCAATCCAAAAGCTTGCATTGAtttttttGCCTGACTGTAAATTCACATTC 1075 |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 940 TAAATGTTTTCATTCCAAAAGCTTGCATTC-TTTTTTGGCCTGACTGTAAATTCACATTC 998 Query 1076 AAAAATCAATCTTAGCGTGTGACCGACTCTTGATAATTT 1114 || | |||||||||| ||||||||||||||||||||||| Sbjct 999 AACA-TCAATCTTAGTGTGTGACCGACTCTTGATAATTT 1036 > Ahg480071 jgi|Araly1|480071|fgenesh2_kg.3__2772__AT2G04220.1 Length=915 Score = 604 bits (327), Expect = 4e-172 Identities = 601/733 (82%), Gaps = 19/733 (3%) Strand=Plus/Plus Query 182 GCAGAGAAGATAACAGAGGATCCGGTGACGTATAAGACAGCACAAAGCAGCGTGACGTGC 241 ||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||| Sbjct 40 GCAGAGAAGATAACAGAGGATCCTGTAACGTATAAGACGGCACAAAGTACCGTGACGTGC 99 Query 242 ATCTACCAAGCACATATGGT-TGGATTCTGGAGAAACGTTAGGGT-TCTATGGTCTAAAA 299 || |||||||| ||||| | ||||| ||||| || |||| ||| | | ||||| || | Sbjct 100 ATTTACCAAGCGCATAT-ATCCGGATTTTGGAGGAATGTTACGGTAT-TGTGGTCCAAGA 157 Query 300 ATCTCATGAACCATTC-CTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATTAC 358 || | ||||| ||||| ||| | || ||||| |||| ||| |||||||||||||||| Sbjct 158 ATGTAATGAATCATTCGCTT-ATGGTCATGGTGACTAACGTGGAAGGCGATATGAATTAT 216 Query 359 TGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGTACAAGAAAGGTTACAAATCGTTT 418 ||||| ||||||||||||||||| ||||| |||||| |||||||||| || || |||||| Sbjct 217 TGTTGTAAGGTTGATCTTAAGCCTTGGCATTTTTGGAACAAGAAAGGCTATAAGTCGTTT 276 Query 419 GAGGTCGAAGGAAACCAAGTAGATGTCTATTGGGATTTTAGGTCTGCGAAATTCAACG-G 477 ||||| ||||| |||| ||||| || ||||||||||||||||||||||||||| ||| | Sbjct 277 GAGGTGGAAGGTAACCCGGTAGAGGTGTATTGGGATTTTAGGTCTGCGAAATTC-ACGAG 335 Query 478 CGGGCCTGAGCCGAGCTCCGATTTTTACGTGGCGCTT-GTATCCGAGGAAGAGGTTGTTT 536 | || ||||||||||| ||||| ||||| || || || || ||||||||||| |||| Sbjct 336 TAGTCCAGAGCCGAGCTCAGATTTCTACGTTGC-TTTAGTCTCGGAGGAAGAGGTGGTTT 394 Query 537 TGTTGTTGGGTGATCACAAGAAGAAAGCTTTTAAGAGGACTAAA-TCTAGACCTTCCTTG 595 ||||| |||||||| |||||||||||||||| || || || ||| || || || | ||| Sbjct 395 TGTTGGTGGGTGATTACAAGAAGAAAGCTTTCAAAAGAAC-AAAGTCGAGGCCCGCTTTG 453 Query 596 GTTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGAT-TTTTTCGAC 654 || || ||||||||||||||||||||||| || |||||||| |||||| | |||| |||| Sbjct 454 GTAGAGGCTGCCTTGTTCTACAAGAAAGAAAACGTGTTTGGCAAGAAG-TGTTTTACGAC 512 Query 655 TAGGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCTA-C-C 712 |||||||||| | || ||||| | ||| || |||||| | ||||| ||||| | | | Sbjct 513 GCGGGCTAAGTTTTACGACAGGAAAAAAGAACACGAGATCATCGTGGAAAGCTCGACCTC 572 Query 713 GGG-GCGAAAGAACCAGAGATGTGGATTAGCGTAGATGGGATCGTTTTGGTTCAGGT-GA 770 ||| | ||||| |||||||||||||| ||| |||| ||||| || || | || || | Sbjct 573 GGGCCCTAAAGAGCCAGAGATGTGGATAAGCATAGACGGGATTGTGTTAATACAAGTCAA 632 Query 771 GAAATCTGCAGTGGAAATTTAGAGGGAACCAGACTGTTTTGGTTGATAAAGAACCTGTTC 830 | ||| |||| |||||||| |||||||| ||||| || |||| |||||| ||||||||| Sbjct 633 G-AATTTGCAATGGAAATTCAGAGGGAATCAGACAGTGCTGGTAGATAAACAACCTGTTC 691 Query 831 AAGTGTTTTGGGATGTGTATGATTGGTTGTTCAGCACCCCCGGTACGGGGCACGGCTTGT 890 ||||||||||||||||||||||||||||||| ||||| || || || || || || |||| Sbjct 692 AAGTGTTTTGGGATGTGTATGATTGGTTGTTTAGCACGCCGGGGACAGGCCATGGTTTGT 751 Query 891 TCATCTTTAAACC 903 |||| || ||||| Sbjct 752 TCATATTCAAACC 764 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52678808835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5