BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12690.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497148 jgi|Araly1|497148|fgenesh2_kg.9__113__AT4G12690.1 1465 0.0
Ahg480071 jgi|Araly1|480071|fgenesh2_kg.3__2772__AT2G04220.1 604 4e-172
> Ahg497148 jgi|Araly1|497148|fgenesh2_kg.9__113__AT4G12690.1
Length=1036
Score = 1465 bits (793), Expect = 0.0
Identities = 976/1059 (92%), Gaps = 33/1059 (3%)
Strand=Plus/Plus
Query 66 GACTCAGAGATCAACAAAACCTAgtttttgaatttgtttcaatttttctcaaattactct 125
||||||| ||||||||||||| || |||| ||| |||| || ||||||||||||
Sbjct 1 GACTCAGGGATCAACAAAACCCAG-TTTT---TTT-TTTC-----TTGTCAAATTACTCT 50
Query 126 gtttttgagatctctgtttt---C-G---T-TA-AATTATGTCTTTGAGGTCAGAATCTT 176
| |||||||||||||||||| | | | || ||||||||||||||| ||||||||||
Sbjct 51 G-TTTTGAGATCTCTGTTTTAACCGGCTTTGTAGAATTATGTCTTTGAGATCAGAATCTT 109
Query 177 CAACGGCAGAGAAGATAACAGAGGATCCGGTGACGTATAAGACAGCACAAAGCAGCGTGA 236
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 110 CAACGGCAGAGAAGATAACAGAGGATCCGCTGACGTATAAGACGGCTCAAAGCAGCGTGA 169
Query 237 CGTGCATCTACCAAGCACATATGGTTGGATTCTGGAGAAACGTTAGGGTTCTATGGTCTA 296
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 170 CGTGCATCTACCAAGCACACATGGTTGGTTTCTGGAGAAACGTTAGGGTTCTTTGGTCTA 229
Query 297 AAAATCTCATGAACCATTCCTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 AAAATCTCATGAACCATTCCTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATT 289
Query 357 ACTGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGTACAAGAAAGGTTACAAATCGT 416
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 290 ACTGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGAATAAGAAAGGATACAAATCGT 349
Query 417 TTGAGGTCGAAGGAAACCAAGTAGATGTCTATTGGGATTTTAGGTCTGCGAAATTCAACG 476
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 350 TTGAGGTCGAAGGAAACCAAGTAGATGTGTATTGGGATTTTAGGTCTGCTAAATTCAATG 409
Query 477 GCGGGCCTGAGCCGAGCTCCGATTTTTACGTGGCGCTTGTATCCGAGGAAGAGGTTGTTT 536
||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 410 GCGGGCCTGAGCCGAGCTCGGACTTTTACGTGGCGCTTGTATCGGAGGAGGAGGTTGTTT 469
Query 537 TGTTGTTGGGTGATCACAAGAAGAAAGCTTTTAAGAGGACTAAATCTAGACCTTCCTTGG 596
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 470 TGTTGTTAGGTGATCACAAGAAGAAAGCTTTTAAGAGAACTAAATCTAGACCTTCTTTGG 529
Query 597 TTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGATTTTTTCGACTA 656
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 530 TTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGAGTTTTTCGACTA 589
Query 657 GGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCTACCGGGG 716
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 590 GGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCGACGGGGG 649
Query 717 CGAAAGAACCAGAGATGTGGATTAGCGTAGATGGGATCGTTTTGGTTCAGGTGAGAAATC 776
|||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 650 CGAAGGATCCAGAGATGTGGATTAGCGTGGATGGGATAGTTTTGGTTCAGGTGAGAAATC 709
Query 777 TGCAGTGGAAATTTAGAGGGAACCAGACTGTTTTGGTTGATAAAGAACCTGTTCAAGTGT 836
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 710 TGCAGTGGAAATTCAGAGGGAATCAGACGGTTTTGGTTGATAAAGAACCTGTTCAAGTGT 769
Query 837 TTTGGGATGTGTATGATTGGTTGTTCAGCACCCCCGGTACGGGGCACGGCTTGTTCATCT 896
||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||||
Sbjct 770 TTTGGGATGTGTATGATTGGTTGTTCAGCTCACCCGGTACAGGTCACGGCTTGTTCATCT 829
Query 897 TTAAACCGGAGAGCGGTGAAAGCGAAACGAGCAACGAAACCAA-GAATTGCAGTGcttct 955
|||||||||||||||||||||||||||||||||| | |||||| || | | |||| || |
Sbjct 830 TTAAACCGGAGAGCGGTGAAAGCGAAACGAGCAATGGAACCAAAGA-TAGTAGTG-TT-T 886
Query 956 tcttcttcttcttcGTCGGAGTTTTGTCTCTTTCTTTATGCTTGGAAATTGGAGTAAGTC 1015
||||||| ||| | | |||||||| || |||||||||||||||||||||||||||
Sbjct 887 -CTTCTTCGTCT--G----ATTTTTGTCTATTCCTTTATGCTTGGAAATTGGAGTAAGTC 939
Query 1016 TAAATGTTTTCAATCCAAAAGCTTGCATTGAtttttttGCCTGACTGTAAATTCACATTC 1075
|||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 940 TAAATGTTTTCATTCCAAAAGCTTGCATTC-TTTTTTGGCCTGACTGTAAATTCACATTC 998
Query 1076 AAAAATCAATCTTAGCGTGTGACCGACTCTTGATAATTT 1114
|| | |||||||||| |||||||||||||||||||||||
Sbjct 999 AACA-TCAATCTTAGTGTGTGACCGACTCTTGATAATTT 1036
> Ahg480071 jgi|Araly1|480071|fgenesh2_kg.3__2772__AT2G04220.1
Length=915
Score = 604 bits (327), Expect = 4e-172
Identities = 601/733 (82%), Gaps = 19/733 (3%)
Strand=Plus/Plus
Query 182 GCAGAGAAGATAACAGAGGATCCGGTGACGTATAAGACAGCACAAAGCAGCGTGACGTGC 241
||||||||||||||||||||||| || ||||||||||| |||||||| | ||||||||||
Sbjct 40 GCAGAGAAGATAACAGAGGATCCTGTAACGTATAAGACGGCACAAAGTACCGTGACGTGC 99
Query 242 ATCTACCAAGCACATATGGT-TGGATTCTGGAGAAACGTTAGGGT-TCTATGGTCTAAAA 299
|| |||||||| ||||| | ||||| ||||| || |||| ||| | | ||||| || |
Sbjct 100 ATTTACCAAGCGCATAT-ATCCGGATTTTGGAGGAATGTTACGGTAT-TGTGGTCCAAGA 157
Query 300 ATCTCATGAACCATTC-CTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATTAC 358
|| | ||||| ||||| ||| | || ||||| |||| ||| ||||||||||||||||
Sbjct 158 ATGTAATGAATCATTCGCTT-ATGGTCATGGTGACTAACGTGGAAGGCGATATGAATTAT 216
Query 359 TGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGTACAAGAAAGGTTACAAATCGTTT 418
||||| ||||||||||||||||| ||||| |||||| |||||||||| || || ||||||
Sbjct 217 TGTTGTAAGGTTGATCTTAAGCCTTGGCATTTTTGGAACAAGAAAGGCTATAAGTCGTTT 276
Query 419 GAGGTCGAAGGAAACCAAGTAGATGTCTATTGGGATTTTAGGTCTGCGAAATTCAACG-G 477
||||| ||||| |||| ||||| || ||||||||||||||||||||||||||| ||| |
Sbjct 277 GAGGTGGAAGGTAACCCGGTAGAGGTGTATTGGGATTTTAGGTCTGCGAAATTC-ACGAG 335
Query 478 CGGGCCTGAGCCGAGCTCCGATTTTTACGTGGCGCTT-GTATCCGAGGAAGAGGTTGTTT 536
| || ||||||||||| ||||| ||||| || || || || ||||||||||| ||||
Sbjct 336 TAGTCCAGAGCCGAGCTCAGATTTCTACGTTGC-TTTAGTCTCGGAGGAAGAGGTGGTTT 394
Query 537 TGTTGTTGGGTGATCACAAGAAGAAAGCTTTTAAGAGGACTAAA-TCTAGACCTTCCTTG 595
||||| |||||||| |||||||||||||||| || || || ||| || || || | |||
Sbjct 395 TGTTGGTGGGTGATTACAAGAAGAAAGCTTTCAAAAGAAC-AAAGTCGAGGCCCGCTTTG 453
Query 596 GTTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGAT-TTTTTCGAC 654
|| || ||||||||||||||||||||||| || |||||||| |||||| | |||| ||||
Sbjct 454 GTAGAGGCTGCCTTGTTCTACAAGAAAGAAAACGTGTTTGGCAAGAAG-TGTTTTACGAC 512
Query 655 TAGGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCTA-C-C 712
|||||||||| | || ||||| | ||| || |||||| | ||||| ||||| | | |
Sbjct 513 GCGGGCTAAGTTTTACGACAGGAAAAAAGAACACGAGATCATCGTGGAAAGCTCGACCTC 572
Query 713 GGG-GCGAAAGAACCAGAGATGTGGATTAGCGTAGATGGGATCGTTTTGGTTCAGGT-GA 770
||| | ||||| |||||||||||||| ||| |||| ||||| || || | || || |
Sbjct 573 GGGCCCTAAAGAGCCAGAGATGTGGATAAGCATAGACGGGATTGTGTTAATACAAGTCAA 632
Query 771 GAAATCTGCAGTGGAAATTTAGAGGGAACCAGACTGTTTTGGTTGATAAAGAACCTGTTC 830
| ||| |||| |||||||| |||||||| ||||| || |||| |||||| |||||||||
Sbjct 633 G-AATTTGCAATGGAAATTCAGAGGGAATCAGACAGTGCTGGTAGATAAACAACCTGTTC 691
Query 831 AAGTGTTTTGGGATGTGTATGATTGGTTGTTCAGCACCCCCGGTACGGGGCACGGCTTGT 890
||||||||||||||||||||||||||||||| ||||| || || || || || || ||||
Sbjct 692 AAGTGTTTTGGGATGTGTATGATTGGTTGTTTAGCACGCCGGGGACAGGCCATGGTTTGT 751
Query 891 TCATCTTTAAACC 903
|||| || |||||
Sbjct 752 TCATATTCAAACC 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5