BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12700.1
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359123 jgi|Araly1|359123|fgenesh1_pg.C_scaffold_9000163 2628 0.0
Ahg930748 jgi|Araly1|930748|scaffold_303205.1 1417 0.0
> Ahg359123 jgi|Araly1|359123|fgenesh1_pg.C_scaffold_9000163
Length=1674
Score = 2628 bits (1423), Expect = 0.0
Identities = 1588/1668 (95%), Gaps = 9/1668 (1%)
Strand=Plus/Plus
Query 99 TCCAGAACCGGAGGTTTCCGACCTGAGAATCTAGGGCAAAACGCAGTATCCTTAATCGGA 158
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 13 TCCAGAACCGGAGGTTTCCGACCAGAGAATCTAGGGCAAAACGCAGTAAGCTTAATCGGA 72
Query 159 AGCATAGGCTTCTCTGTACTCGTAATCGGAGTCGTAGTTTTCACCATTATCGCTGCTACA 218
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 73 AGCATAGGCTTCTCTATATTCGTAATCGGAGTCGTAGTTTTCACCATTACCGCTGCTACA 132
Query 219 TATGAACCAGAAGATCCACTATTTCACCCATCTGACAAAATCACAACTTTCCTCACATCC 278
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 133 TATGAACCAGAAGATCCACTTTTTCACCCATCTGACAAAATCACAACTTTCCTCTCATCC 192
Query 279 AATTCAAACGCTACTCTTAAATCCGACGACAGTATTGTCAAAACCGGTGAAGATTTCATG 338
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 193 AATTCAAACGCTACTCTTAAATCCGACGACAGTGTTGTTAAAACCGGTGAAGATTTCATG 252
Query 339 GCGGCGAACCAAACCGCGTTTGGC-GGATTCATCAATATAGCTGATGTTGAAACATCTGA 397
|||||||||||||||||| || || ||||||||||| ||||||||||| |||||||||||
Sbjct 253 GCGGCGAACCAAACCGCG-TTCGCTGGATTCATCAACATAGCTGATGTGGAAACATCTGA 311
Query 398 GAATGACTCTGATGGTAATCAATTGGATTGTGATACCAATATCCCAATTGATTGCAAAGA 457
|||||| ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 312 GAATGATTCTGATGCTAATCAATTGGATTGTGATTCCAATGTCCCAATCGATTGCAAAGA 371
Query 458 TCCTGAAGTTTTTCACTTGATGATGAAAGCTACTATGGAGAAGTTTAAAGACAGTCACTT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 372 TCCTGAAGTTTTTCACTTGATGATGAAAGCTACTATGGAGAAGTTTAAAGACATTCACTT 431
Query 518 TTATAAGTTTGGTAAACCTGTGATTGTGGAAGGTAGTAGTAGTTCTTGTGATATGGCTTG 577
||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||
Sbjct 432 TTATAAGTTTGGTAAACCTGTGACTGTGGAA-G--GTACTAGTTCTTGTGATATGGCTTG 488
Query 578 GCGTTATAGACCTAAGGATGGTAAAGCGGCTGCGTTTTATAAGGATTATAGGAGGTTTGT 637
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 489 GCGTTATAGACCTAAGGATGGTAAAACGGCTACGTTTTATAAGGATTATAGGAGGTTTGT 548
Query 638 GATTGAAAAGTCTGGGAATTGTAGTGTTAGTGTGATGGGGATTGGTGAGTATCATTCGGG 697
||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 549 GATTGCAAAGTCTGAGAATTGTAGTGTTAGTGTGATGGGTATTGGTGAGTATCATTCGGG 608
Query 698 TGTGAATGCGAGGAAGCGGAAGAGGCCCGGGTTTCGAAATTCGAGTGGTGGTAAGGTTGA 757
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 609 TGTGAATGCGAGGAAGCGGAAGAGGCCCGGGTTTCGGAATTCGAGTGGTGGTAAGGTTGA 668
Query 758 TGATTTCGCATTGCCTGTAGTTGGTGAAGCAGTGAATGATTCACTTCCTGTTGTTGAGTC 817
||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 669 TGATTTCTCATTGCCTGTGGTTGGTGAAGCAGTGAATGATTCACTTCCTGTGGTTGAGTC 728
Query 818 TGAAAATGTGTTTAAAGAAGGTCATTACTTGGTTTATTCTGGTGGAGGAGATAGGTGTAA 877
||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 729 TGAGAATGCGTTTAAAGAAGGTCATTACTTGGTTTATTCGGGTGGAGGAGATAGGTGTAA 788
Query 878 GAGTATGAACCATTTCTTGTGGAGTTTCTTGTGTGCTTTAGGGGAAGCTCAGTATTTGAA 937
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 789 GAGTATGAACCATTTCTTGTGGAGTTTCTTGTGTGCTTTGGGGGAAGCTCAGTATTTGAA 848
Query 938 TAGAACATTAGTGATGGATTTGACTCTTTGTTTGTCTTCTGTTTATACATTGTCTGGTCA 997
||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 849 TAGGACTTTAGTGATGGATTTGAGTCTTTGTTTGTCTTCTGTTTATACGTTGTCTGGTCA 908
Query 998 AAACGAGGAAGGGAAGGACTTTAGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGC 1057
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AAACGAGGAAGGAAAGGACTTTAGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGC 968
Query 1058 TTCTATGTTAGACCAGGTGCAGTTTTGGGCTGATTGGGGGAAATGGTATAAGAAGAATGG 1117
|||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 969 TTCTGTGATAGACCAGGTGCAGTTTTGGGCAGATTGGGGAAAATGGTATAAGAAGAATGG 1028
Query 1118 ATTAAAGCTTCATCTTGTGGAAGATTTTCGGGTCACACCGATGAAGCTTGTTGATGTGAA 1177
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1029 ATTAAAGCTTCATCTTGTGGAAGACTTTAGGGTCACACCGATGAAGCTTGTTGATGTTAA 1088
Query 1178 GGACACGTTGATAATGAGGAAGTTCGGGACAGTAGAACCAGATAACTATTGGTATAGAGT 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1089 GGACACGTTGATAATGAGGAAGTTCGGGACAGTAGAACCAGATAACTATTGGTACAGAGT 1148
Query 1238 ATGCGAAGGGGAGACAGAATCTGTTGTGCAAAGGCCTTGGAATCTATTGTGGAAATCTAA 1297
|| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||
Sbjct 1149 TTGTGAAGGGGAGACAGAATCTGTTGTGCAAAAGCCTTGGCATCTGTTGTGGAAATCTAG 1208
Query 1298 ACGACTGATGGAGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTAT 1357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 ACGGCTGATGGAGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTAT 1268
Query 1358 TCACATTGAGAGAGGAGACAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTTGAAAAGGA 1417
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1269 TCACATTGAGAGAGGAGATAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTGGAAAAGGA 1328
Query 1418 TACTTCACCAAGCTCCATTTTATCTACCCTCCAGGACAAAATCGAACAAGGAAGGAATCT 1477
|||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1329 TACTTCACCAAGCTCCATTTTATCTACCCTGAAGGACAAAATCGAGCAAGGGAGGAATCT 1388
Query 1478 TTATATTGCAACAAATGAACCAGA-GTTATCTTTCTTTAACCCCT-TGAAAGACAAGTAC 1535
|||||||||||||||||||||||| || | ||||| ||||||| | ||||||||||||||
Sbjct 1389 TTATATTGCAACAAATGAACCAGATGTAA-CTTTCCTTAACCC-TATGAAAGACAAGTAC 1446
Query 1536 AAACCCCATTTTCTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCA 1595
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 AAAACCCATCTTCTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCA 1506
Query 1596 GAGACAACGAAGCTTAATGGAGGAAACCCAGTTGAGTTTGACGGTTACATGAGAGCGTCT 1655
||||| | |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1507 GAGACCATGAAGCTTAATGGAGGAAACCCAGTCGATTTTGACGGTTACATGAGAGCGTCT 1566
Query 1656 GTTGATACAGAGGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACC 1715
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 GTTGATACGGAAGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACC 1626
Query 1716 AATGACTGTAGAGATGGAATCGGCACTTGCAACGTAGCAGCAAGCTGA 1763
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1627 AATGACTGTAGAGACGGAATCGGCACTTGCAACGTAGCAGCAAGCTGA 1674
> Ahg930748 jgi|Araly1|930748|scaffold_303205.1
Length=1747
Score = 1417 bits (767), Expect = 0.0
Identities = 1404/1699 (83%), Gaps = 94/1699 (6%)
Strand=Plus/Plus
Query 108 GGAGGTTTCCGACCTGAGAATCTAGGGCAAAACGCA-GTATCCTTAATCGG-AAGCATAG 165
||||||||||| |||||||||||||||||||||||| || ||||||| || || |||||
Sbjct 47 GGAGGTTTCCGTCCTGAGAATCTAGGGCAAAACGCACTTA-CCTTAATAGGTAA-CATAG 104
Query 166 GCTTCTCTGTAC-TCGTAATCGGAGT-CGTAGTTTTCACCATTATCGCTGCTACATATGA 223
||||||| | | |||| ||||||| | || | |||||||||||||| || || || ||
Sbjct 105 GCTTCTCACT-CTTCGTCTTCGGAGTAC-TAATCTTCACCATTATCGCCGCAACTTACGA 162
Query 224 ACCAGAAGATCCACTATTTCACCCATCTGACAAAATCACAACTTTCCTCACATCCA-ATT 282
|||||||||||| || || |||||||||||||||||||||||||||||||| |||| | |
Sbjct 163 ACCAGAAGATCCTCTCTTCCACCCATCTGACAAAATCACAACTTTCCTCACTTCCACA-T 221
Query 283 CAAACGCTACTCTTAAATCCGACGACAGTATTGTCAAAACCGGTGAAGATTTCATGGCGG 342
|||||||||| || | |||||| ||| |||| |||||||||||||||||||||| |
Sbjct 222 CAAACGCTACACTGAGATCCGATGACTCCGTTGTTAAAACCGGTGAAGATTTCATGGTAG 281
Query 343 CGAACCAAACCGCGTTTGGCGGA-TTCATCAATATAGCTGATGTTG-A--AA-C-AT--C 394
|||| |||||||| ||| ||||| || ||||| ||| ||||||||| | || | || |
Sbjct 282 CGAATCAAACCGCATTT-GCGGAGTTTATCAACATAACTGATGTTGAAGCAACCAATACC 340
Query 395 --TGAGAATGAC-TC----TGA-TGG-TAATCAATTGGATTGTGATACCAATATC-CCAA 444
||||| | || || || || |||||| ||||| |||||| |||| | ||||
Sbjct 341 AATGAGACT-ACTTCAGAGGGAGAGGCTAATCAGTTGGAATGTGATGTGAATA-CTCCAA 398
Query 445 TTGATTGCAAAGATCCTGAAGTTTTTCA-CTTGATGATGAAAGCTACTATGGAGAAGTTT 503
||||||||||||||| ||||| ||||| ||| ||||||| ||||||||| |||||||||
Sbjct 399 TTGATTGCAAAGATCAAGAAGTGTTTCATCTT-ATGATGAGAGCTACTATTGAGAAGTTT 457
Query 504 AAAGACAGTCACTTTTATAAGTTTGGTAAACCTGTGATT-GTGGAAGGTAGTAGTAGTTC 562
||||| | ||||||||||||||||||||| |||||| || || |||||| || | | |||
Sbjct 458 AAAGATATTCACTTTTATAAGTTTGGTAAGCCTGTGGTTGGT-GAAGGT-GT-G-AATTC 513
Query 563 TTGTGATATGGCTTGGCGTTATAGACCTAAGGATGGTAAAGCG-GCTGCGTTTTATAAGG 621
|||||||||||| ||||| ||||| ||||| ||||| ||| | ||||| ||||||||||
Sbjct 514 TTGTGATATGGCGTGGCGGTATAGGCCTAAAGATGG-GAAGAGTGCTGCTTTTTATAAGG 572
Query 622 ATTATAGGAGGTTTG-TGATTGAAAAGTCTGGGAATTGTAGTGTTAGTG-TGATGGGGAT 679
||||||||||||||| || ||| ||||||| |||||||||||| |||| || |||||||
Sbjct 573 ATTATAGGAGGTTTGTTG-TTGGTAAGTCTGAGAATTGTAGTGTGAGTGTTG-TGGGGAT 630
Query 680 TGGTGAGTATCATTCGGGTGTGAATGCGAGGAAGCGGAAG-AG-----G---CCCGGGTT 730
||||||||||||||||||| |||||||||||||||||||| || | | |||||
Sbjct 631 TGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGCGGAAGAAGAATCAGAAAGCTGGGTT 690
Query 731 TCGA-AATTCGAGTGGTG-GTAAGGTTGATGATTTCGCATTGCCTGTAGTTGGTGAAGC- 787
| || || | ||||| | ||| ||||||||| | |||||||| ||||||||| |
Sbjct 691 T-GAGAA---AACTGGTGAG-AAGAAAGATGATTTCTCTTTGCCTGTTGTTGGTGAA-CT 744
Query 788 AGTGAATGATTCACTTCCTGTTGTTGAGTCTGAAAATGTGTTTAAAGAAG-GTC-ATTAC 845
|||||||||||| |||||| | ||||||||||| | ||||||| ||| || | | | ||
Sbjct 745 AGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTT-AAG-AGTGGCAAGTAT 802
Query 846 TTGGTTTAT-TCTGGTGGAGGAGATAGGTGTAAGAGTATGAACCA-TTTCTTGTGGAGTT 903
||||||||| | |||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 803 TTGGTTTATGT-TGGTGGAGGAGATAGGTGTAAGAGTATGAATCATTTTC-TGTGGAGTT 860
Query 904 TCTTGTGTGC-TTTAGGGGAAGCTCAGTATTTGAATAGAACATTAGTGATGGATTTGACT 962
| |||||||| || ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 861 TTTTGTGTGCACTT-GGGGAAGCTCAGTATTTGAATAGGACTTTGGTGATGGATTTGAC- 918
Query 963 CTT-TGTTTGTCTTCTGTTTATACATTGTCTGGTCAAAACGAGGAAGGGAAGGACTTTAG 1021
|| |||||||||||| | || || | ||||||||| ||||||||||||||||||||| |
Sbjct 919 GTTGTGTTTGTCTTCTATCTACACGTCGTCTGGTCAGAACGAGGAAGGGAAGGACTTTCG 978
Query 1022 GTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGCTTCTATGTTAGACCAGGTGCAGTT 1081
||||||||||||||||||||||||||| || ||||||||| |||| || | || |||||
Sbjct 979 GTTTTACTTTGATTTCGAGCATTTGAAGGAAGCTGCTTCTGTGTTGGATGAAGTTCAGTT 1038
Query 1082 TTGGGCTGATTGGGGGAAA-TG-GT-A-TA-AGAAG-AATGGATTAAAGCTTCATCTTGT 1135
||||||| | ||||||||| || | | | ||||| ||| |||| || ||||||| ||
Sbjct 1039 TTGGGCTAAGTGGGGGAAATTGCATAAGAAGAGAAGAAATAGATTGAATATTCATCTCGT 1098
Query 1136 GGAAGATTTTCGGGTCACACCGATGAAGCTTGTTGATGTGAAGGACACGTTGATAATGAG 1195
||| |||||| ||||||| ||||||||||||| ||||| || || ||||||||||||||
Sbjct 1099 GGAGGATTTTAGGGTCACGCCGATGAAGCTTGCGGATGTAAAAGATACGTTGATAATGAG 1158
Query 1196 GAAGTTCGGGACAGTAGAACCAGATAACTATTGGTATAGAGTATGCGAAGGGGA-GACAG 1254
|||||| ||| | ||||||||||| || |||||||| ||||| || ||||| || | |||
Sbjct 1159 GAAGTTTGGGTCGGTAGAACCAGACAATTATTGGTACAGAGTTTGTGAAGGAGATG-CAG 1217
Query 1255 AATCTGTTGTGCAAAGGCCTTGGAATCTATTGTGGAAATCTAA-ACGACTGATGGAGATT 1313
|||||||||| ||||||| ||| |||| || |||||||| || | | ||||||| |||
Sbjct 1218 AATCTGTTGTTAAAAGGCCGTGGCATCTGTTATGGAAATC-AAGAAGGTTGATGGAAATT 1276
Query 1314 GTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTA-TTCACATTGAGAGAGG 1372
|| ||||||||||| || ||||||||||||||||| ||||| | | ||||||||||||||
Sbjct 1277 GTCTCTGCGATTGCATCAAGGTTAAACTGGGATTACGATGC-AGTACACATTGAGAGAGG 1335
Query 1373 AGACAAGGCGAGAAACAAGGAAG-TTTGGCCTAATCTTGAAAAGGATACTTCACCAAGCT 1431
||| || || |||||||||| || | |||||||||||||||| ||||||||| || |||
Sbjct 1336 AGATAAAGCAAGAAACAAGG-AGCTGTGGCCTAATCTTGAAACGGATACTTCCCCGAGCG 1394
Query 1432 C-CATTTTATCTACCCTCCAGGACAAAATCGAACAAGGAAGGAATCTTTATATTGCAACA 1490
| | |||| || ||| | ||||||||| | ||| |||||||| |||| || || ||||||
Sbjct 1395 CTC-TTTTGTCGACCTTGCAGGACAAAGTAGAAGAAGGAAGGCATCTCTACATCGCAACA 1453
Query 1491 AATGAACCAGAGTTATCTTTCTTTAACCCCTTGAAAGACAAGTACAAACC-C-CATTTTC 1548
|||||| ||||||||| ||||| ||||| ||||||||||||| | || | |||||||
Sbjct 1454 AATGAAGAAGAGTTATCCTTCTTCAACCCTTTGAAAGACAAGT--ATGCCACTCATTTTC 1511
Query 1549 TGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCAGAGACAACGAAGC 1608
| | || | || ||||| |||||||||| ||||| |||||||||||||| || ||||
Sbjct 1512 TTTACGACTACAAAGATCTGTGGGACGAGAATAGCGAGTGGTATTCAGAGACTACAAAGC 1571
Query 1609 TTAATGGAGGAAACCCAGTTGAGTTTGACGGTTACATGAGAGCGTCTGTTGATACAGAGG 1668
|||||||||| ||||| || |||||||| |||||||||||||| |||||||| ||||| |
Sbjct 1572 TTAATGGAGGCAACCCGGTCGAGTTTGATGGTTACATGAGAGCATCTGTTGACACAGAAG 1631
Query 1669 TGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACCAATGACTGTAGAG 1728
| ||||||||||||||||||||||||||||||||||| |||||||| || || || | ||
Sbjct 1632 TATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGCAAAG 1691
Query 1729 ATGGAATCGGCACTTGCAA 1747
||||| | || || |||||
Sbjct 1692 ATGGAGTTGGGACCTGCAA 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72904728930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5