BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12710.1
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497150 jgi|Araly1|497150|fgenesh2_kg.9__115__AT4G12710.1 2130 0.0
> Ahg497150 jgi|Araly1|497150|fgenesh2_kg.9__115__AT4G12710.1
Length=1451
Score = 2130 bits (1153), Expect = 0.0
Identities = 1380/1484 (93%), Gaps = 38/1484 (3%)
Strand=Plus/Plus
Query 1 GTCGTTTCGTCTTTGACTagagagaaaca-aacacaagagcgagcaagcgagcgagagag 59
|||||||||||||||||| ||| ||||| || | |||||||| || ||||||| |||
Sbjct 1 GTCGTTTCGTCTTTGACT--AGATAAACACAAGA-GAGAGCGAG-GAGAGAGCGAGCGAG 56
Query 60 acagagaTAATGGTGGTGGAAGAGAACCAGAATCAGATGATGGCTTCCATCGCCGGCGAC 119
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 57 --AGAGATAATGGTGGTGGAAGAGAATCAGAATCAGATGATGGATTCCATCGCCGGCGAC 114
Query 120 TCAACGGTGACGGCAAATATATCGGAAGAAGACGAAGCAGAGGAGGAAACCACCACCAAC 179
||| || | || |||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 115 TCAGCGATAACTGCAAATGTATC-G--GAAGACGAAGCAGAGGAGGAAACCACCACCAAC 171
Query 180 ACATGGAAAACCACAAAGGAATTACTGATTCTACATCTCTCCAAGAAGCTTCTCCATGGA 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ACATGGAAAAACACAAAGGAATTACTGATTCTACATCTCTCCAAGAAGCTTCTCCATGGA 231
Query 240 GATCTCGATTTCCGAATTGAAGCCGCTAAGGAAATCCGAAAGCTGCTTAGAAAGTCTCCG 299
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 232 GATCTCGATTTCCGAATTGAAGCCGCCAAGGAAATCCGGAAGCTGCTTAGAAAGTCTCCG 291
Query 300 GTTAAGTCTTCCGCTAGGTCAAAACTCGCCGACGCCGGCGTTATCCCGCCGCTTGTTCCC 359
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 292 GTTAAGTCTTCGGCTAGGTCAAAGCTCGCCGACGCCGGAGTTATCCCGCCGCTTGTTCCC 351
Query 360 ATGCTC-TTCTCCTCTAACGTTGATGCTCGTCACGCCTCTCTCCTCGCTCTCCTTAACCT 418
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATGCTCATT-TCCTCTAACGTTGATGCTCGTCACGCCTCTCTCCTCGCTCTCCTTAACCT 410
Query 419 CGCCGTTAGAAATGAACGGAATAAGATTGAGATTGTGAAAGCCGGTGCCGTTCCACCTCT 478
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 411 CGCCGTTAGAAATGAACGGAATAAGATTGAAATTGTGAAAGCTGGTGCCGTTCCACCTCT 470
Query 479 CATACAGATTCTGAAGCTCCACAATGCTAGTTTGCGTGAATTGGCCACTGCAGCAATTCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CATACAGATTCTGAAGCTCCACAATGCTAGTTTGCGTGAATTGGCCACTGCAGCAATTCT 530
Query 539 AACACTTTCAGCTGCACCAGCCAACAAGGCGATGATTATAAGTTCTGGAGTTCCACCGCT 598
|||||| |||||||||||||| || ||||||| ||| |||| ||||||||||||||||||
Sbjct 531 AACACTCTCAGCTGCACCAGCTAATAAGGCGACGATCATAACTTCTGGAGTTCCACCGCT 590
Query 599 TCTGATTCAGATGCTTAGCTCCGGAACTGTACAAGGGAAAGTAGATGCTGTCACAGCCCT 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 591 TCTGGTTCAGATGCTTAGCTCCGGAACTGTACAAGGGAAAGTAGATGCTGTCACAGCTCT 650
Query 659 TCATAATTTATCAGCTTGCAAAGAGTACTCTGCTCCAATTCTT-GATGCTAAAGCTGTCT 717
||| ||| |||| ||||||||||||||||| ||| ||||| || ||||||||||| ||||
Sbjct 651 TCACAATCTATCCGCTTGCAAAGAGTACTCCGCTTCAATT-TTAGATGCTAAAGCCGTCT 709
Query 718 ACCCGCTCATCCACCTCCTTAAAGAATGCAAAAAACATTCCAAGTTTGCTGAAAAAGCCA 777
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 710 CCCCGCTCATCCACCTCCTAAAAGAATGCAAAAAGCATTCCAAGTTTGCTGAAAAAGCCA 769
Query 778 CAGCCTTGGTTGAGATGATCCTGTCTCACTCTGAGGACGGGCGAAATGCCATCACCAGCT 837
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 770 CAGCCTTGGTTGAGATGATCCTTTCTCACTCTGAGGACGGGCGAAACGCCATCACCAGCT 829
Query 838 GTGAAGATGGTATTCTGACTTTAGTAGAGACTGTAGAGGATGGTTCTCCACTCAGCATAG 897
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 830 GCGAAGATGGTATTCTGACTTTAGTAGAGACTGTAGAGGATGGTTCTCCACTTAGCATAG 889
Query 898 AACACGCAGTTGGAGCTCTGCTTTCTCTATGCCGCAGCGACCGAGATAAGTACCGAAAAC 957
||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 890 AACACGCGGTTGGAGCTTTGCTTTCTCTATGCCGCAGCGACCGCGATAAGTACCGGAAAC 949
Query 958 TCATACTGAAAGAAGGTGCAATCCCGGGTCTCCTAAGTTCAACAGTAGATGGAACATCAA 1017
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 950 TCATACTAAAAGAAGGTGCAATCCCGGGTCTCCTAAGTTCAACCGTAGAAGGAACATCAA 1009
Query 1018 AGTCCCGAGATAGAGCCAGAGTTCTCTTGGACCTACTGAGAGAAACCCCTCGTGAGAAAG 1077
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1010 AGTCCCGAGATAGAGCCAGAGTTCTCTTGGACCTACTGAGAGAAACCTCTCGTGAGAAAG 1069
Query 1078 AAATGACTCCATTAACACTAGAGAAAATTGTCTATGGCATTGCAGTACAAGTCGACGGGG 1137
||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AAATGGCTCCATTAATACTCGAGAAAATTGTCTATGGCATTGCAGTACAAGTCGACGGGG 1129
Query 1138 CAGAAAAAGCTGCTGAAACGGCTAAGAAACTGCTGCAGGACATGGTTCATAGAAGCATGG 1197
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1130 CAGAAAAAGCTGCTGAAACGGCTAAGAAACTGTTGCAGGACATGGTTCATAGAAGCATGG 1189
Query 1198 AGCTGAGCATGAAAAGCATCCAGCACAAGGCTGCGTCTTGTGCATCTATTCCTGATATCT 1257
|||||||||||||||||||||||||||||||| | || || ||
Sbjct 1190 AGCTGAGCATGAAAAGCATCCAGCACAAGGCT-----------A---AT-----AT--CT 1228
Query 1258 CTTCCAAATCGAATAGCTAACGATCGTAGTGGTAATATTATTGATATCGTAGAAGCAA-G 1316
||||||||||||||| ||||||||| |||||||||||||||||||| | |||||| || |
Sbjct 1229 CTTCCAAATCGAATATCTAACGATCATAGTGGTAATATTATTGATACCTTAGAAGTAAAG 1288
Query 1317 AAGGTTGCATTACGAGATTTGTAG-TGTTTCAGGTTCTGATCTGGAAAAATTCAAGAATT 1375
|||||||||||| ||||||||||| | ||| | |||||||||||||||||||||||||
Sbjct 1289 AAGGTTGCATTATGAGATTTGTAGGTTTTTTTG-TTCTGATCTGGAAAAATTCAAGAATC 1347
Query 1376 AGAGCCGGGTTTAGGTCTAGTCTTACCTCTCCGGAGTTGGAAGAAAAACCATTTGCTAAG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1348 AGAGCCGGGTTTAGGTCTAGTCTTACCTCTCCGGAGTTGGAAGAAAAACCATTTGGTAAG 1407
Query 1436 TTTTGAAGGCTGAATTTTTCTTTCCCTTTTGTACATACTTTTGG 1479
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1408 TTTTTAAGGCTGAATTTTTCTTTCCCTTTTGTACATACTTTTGG 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5