BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12720.4 Length=1391 Score E Sequences producing significant alignments: (Bits) Value Ahg333087 jgi|Araly1|333087|fgenesh1_pm.C_scaffold_9000115 750 0.0 > Ahg333087 jgi|Araly1|333087|fgenesh1_pm.C_scaffold_9000115 Length=849 Score = 750 bits (406), Expect = 0.0 Identities = 422/430 (98%), Gaps = 0/430 (0%) Strand=Plus/Plus Query 325 ATGGGTACTAGAGCTCAGCAGATTCCTTTACTTGAAGGTGAGACTGATAATTACGATGGT 384 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATCCTAGAGCTCAGCAGATTCCTTTACTTGAAGGTGAGACTGATAATTACGATGGT 60 Query 385 GTTACTGTAACCATGGTGGAACCTATGGATTCTGAGGTTTTTACTGAAAGTCTTAGGGCT 444 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 GTTACCGTAACCATGGTGGAACCTATGGATGCTGAGGTTTTTACTGAAAGTCTTAGGGCT 120 Query 445 TCTCTTTCGCATTGGAGAGAAGAGGGGAAGAAGGGAATTTGGATAAAGCTGCCTCTTGGA 504 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCGCTTTCGCATTGGAGAGAAGAGGGGAAGAAGGGAATTTGGATAAAGCTGCCTCTTGGA 180 Query 505 TTGGCTAATCTTGTGGAGGCTGCAGTTAGTGAAGGATTTAGATATCACCACGCGGAGCCT 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGGCTAATCTTGTGGAGGCTGCAGTTAGTGAAGGATTTAGATATCACCACGCGGAGCCT 240 Query 565 GAGTACTTGATGCTTGTATCTTGGATCTCTGAAACTCCTGATACAATCCCAGCCAATGCT 624 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 241 GAGTACTTGATGCTTGTATCTTGGATCTCTGAAACCCCTGATACGATCCCAGCCAATGCT 300 Query 625 TCTCATGTTGTAGGTGCTGGTGCTTTGGTCATCAACAAAAATACTAAAGAGGTCCTCGTT 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCTCATGTTGTAGGTGCTGGTGCTTTGGTCATCAACAAAAATACTAAAGAGGTCCTCGTT 360 Query 685 GTCCAGGAGAGGAGTGGGTTTTTCAAAGATAAAAATGTGTGGAAGCTGCCTACTGGTGTT 744 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 361 GTCCAGGAGAGGAGTGGGTTTTTCAAAGCTAAAAATGTGTGGAAGCTGCCTACTGGTGTT 420 Query 745 ATCAACGAGG 754 |||||||||| Sbjct 421 ATCAACGAGG 430 Score = 701 bits (379), Expect = 0.0 Identities = 407/421 (97%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 873 GGGCGAGGATATATGGACTGGAGTAGCTAGGGAAGTGGAAGAAGAAACTGGAATTATTGC 932 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 429 GGGCGAGGATATATGGACTGGAATAGCTAGGGAAGTGGAAGAAGAAACTGGTATTATTGC 488 Query 933 AGATTTTGTCGAAGTACTGGCTTTCAGGCAAAGCCACAAAGCCATCTTAAAAAAGAAAAC 992 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 489 AGATTTTGTCGAAGTATTGGCTTTCAGGCAAAGCCACAAAGCCATCTTGAAAAAGAAAAC 548 Query 993 AGATATGTTTTTCCTGTGTGTCTTAAGTCCGCGCTCTTACGATATTACTGAACAAAAATC 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 AGATATGTTTTTCCTGTGTGTCTTAAGTCCGCGCTCTTACGATATTACTGAACAAAAATC 608 Query 1053 TGAGATCTTGCAAGCTAAGTGGATGCCGATCCAAGAGTATGTAGACCAACCATGGAACAA 1112 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 609 TGAGATCTTGCAAGCTAAGTGGATGCCAATCCAAGAGTATGTAGACCAACCATGGAACAA 668 Query 1113 GAAGAACGAGATGTTCAAGTTCATGGCTAACATTTGCCAAAAGAAGTGTGAGGAAGAATA 1172 ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 669 GAAAAACGAGATGTTCAAGTTCATGGCCAACATCTGCCAAAAGAAGTGTGAGGAAGAATA 728 Query 1173 CTTGGGATTCGCCATTGTGCCAACTACCACATCATCTGGTAAAGAGAGCTTTATCTACTG 1232 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 729 CTTGGGATTCGCCATTGTGCCAACTACCACATCATCTGGTAAGGAGAGCTTTATCTACTG 788 Query 1233 CAATGCGGATCATGCCAAGCGCCTTAAAGTATCGCGTGACCAAGCCTCTGCTTCTCTCTG 1292 |||||| ||||||||||| |||||||||| | |||||||||||||||| ||||||||||| Sbjct 789 CAATGCTGATCATGCCAATCGCCTTAAAGCAACGCGTGACCAAGCCTCCGCTTCTCTCTG 848 Query 1293 A 1293 | Sbjct 849 A 849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51993184425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5