BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12720.4
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333087 jgi|Araly1|333087|fgenesh1_pm.C_scaffold_9000115 750 0.0
> Ahg333087 jgi|Araly1|333087|fgenesh1_pm.C_scaffold_9000115
Length=849
Score = 750 bits (406), Expect = 0.0
Identities = 422/430 (98%), Gaps = 0/430 (0%)
Strand=Plus/Plus
Query 325 ATGGGTACTAGAGCTCAGCAGATTCCTTTACTTGAAGGTGAGACTGATAATTACGATGGT 384
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCCTAGAGCTCAGCAGATTCCTTTACTTGAAGGTGAGACTGATAATTACGATGGT 60
Query 385 GTTACTGTAACCATGGTGGAACCTATGGATTCTGAGGTTTTTACTGAAAGTCTTAGGGCT 444
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GTTACCGTAACCATGGTGGAACCTATGGATGCTGAGGTTTTTACTGAAAGTCTTAGGGCT 120
Query 445 TCTCTTTCGCATTGGAGAGAAGAGGGGAAGAAGGGAATTTGGATAAAGCTGCCTCTTGGA 504
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGCTTTCGCATTGGAGAGAAGAGGGGAAGAAGGGAATTTGGATAAAGCTGCCTCTTGGA 180
Query 505 TTGGCTAATCTTGTGGAGGCTGCAGTTAGTGAAGGATTTAGATATCACCACGCGGAGCCT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGCTAATCTTGTGGAGGCTGCAGTTAGTGAAGGATTTAGATATCACCACGCGGAGCCT 240
Query 565 GAGTACTTGATGCTTGTATCTTGGATCTCTGAAACTCCTGATACAATCCCAGCCAATGCT 624
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 241 GAGTACTTGATGCTTGTATCTTGGATCTCTGAAACCCCTGATACGATCCCAGCCAATGCT 300
Query 625 TCTCATGTTGTAGGTGCTGGTGCTTTGGTCATCAACAAAAATACTAAAGAGGTCCTCGTT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCATGTTGTAGGTGCTGGTGCTTTGGTCATCAACAAAAATACTAAAGAGGTCCTCGTT 360
Query 685 GTCCAGGAGAGGAGTGGGTTTTTCAAAGATAAAAATGTGTGGAAGCTGCCTACTGGTGTT 744
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GTCCAGGAGAGGAGTGGGTTTTTCAAAGCTAAAAATGTGTGGAAGCTGCCTACTGGTGTT 420
Query 745 ATCAACGAGG 754
||||||||||
Sbjct 421 ATCAACGAGG 430
Score = 701 bits (379), Expect = 0.0
Identities = 407/421 (97%), Gaps = 0/421 (0%)
Strand=Plus/Plus
Query 873 GGGCGAGGATATATGGACTGGAGTAGCTAGGGAAGTGGAAGAAGAAACTGGAATTATTGC 932
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 429 GGGCGAGGATATATGGACTGGAATAGCTAGGGAAGTGGAAGAAGAAACTGGTATTATTGC 488
Query 933 AGATTTTGTCGAAGTACTGGCTTTCAGGCAAAGCCACAAAGCCATCTTAAAAAAGAAAAC 992
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 489 AGATTTTGTCGAAGTATTGGCTTTCAGGCAAAGCCACAAAGCCATCTTGAAAAAGAAAAC 548
Query 993 AGATATGTTTTTCCTGTGTGTCTTAAGTCCGCGCTCTTACGATATTACTGAACAAAAATC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AGATATGTTTTTCCTGTGTGTCTTAAGTCCGCGCTCTTACGATATTACTGAACAAAAATC 608
Query 1053 TGAGATCTTGCAAGCTAAGTGGATGCCGATCCAAGAGTATGTAGACCAACCATGGAACAA 1112
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 609 TGAGATCTTGCAAGCTAAGTGGATGCCAATCCAAGAGTATGTAGACCAACCATGGAACAA 668
Query 1113 GAAGAACGAGATGTTCAAGTTCATGGCTAACATTTGCCAAAAGAAGTGTGAGGAAGAATA 1172
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 669 GAAAAACGAGATGTTCAAGTTCATGGCCAACATCTGCCAAAAGAAGTGTGAGGAAGAATA 728
Query 1173 CTTGGGATTCGCCATTGTGCCAACTACCACATCATCTGGTAAAGAGAGCTTTATCTACTG 1232
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 729 CTTGGGATTCGCCATTGTGCCAACTACCACATCATCTGGTAAGGAGAGCTTTATCTACTG 788
Query 1233 CAATGCGGATCATGCCAAGCGCCTTAAAGTATCGCGTGACCAAGCCTCTGCTTCTCTCTG 1292
|||||| ||||||||||| |||||||||| | |||||||||||||||| |||||||||||
Sbjct 789 CAATGCTGATCATGCCAATCGCCTTAAAGCAACGCGTGACCAAGCCTCCGCTTCTCTCTG 848
Query 1293 A 1293
|
Sbjct 849 A 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5