BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12740.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915201 jgi|Araly1|915201|Al_scaffold_0009_170 1821 0.0
> Ahg915201 jgi|Araly1|915201|Al_scaffold_0009_170
Length=1488
Score = 1821 bits (986), Expect = 0.0
Identities = 1212/1319 (92%), Gaps = 23/1319 (2%)
Strand=Plus/Plus
Query 326 aagcagaagaagaagCGCTTGGAGGAGATATAGAGGATCTCTTTAGTGAAAATGAAACTC 385
||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 173 AAGAAGAAGAAGAACCGCTTGGAGGAGATATAGAGGATCTCTTTAGCGAAAATGAAACTC 232
Query 386 AGAAAATCAGAATGGGTTTGCTTGATTGGTACGATGTGAATAAGAGAGATCTTCCATGGA 445
|| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 233 AGGAAATCAGAATGGGTATGCTTGATTGGTACGATGTGAATCAGCGAGATCTTCCATGGA 292
Query 446 GGAACAGAAGAAGTGAAAGTGAAAAGGAGAGAAGAGCTTATGAGGTTTGGGTATCGGAGA 505
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GGAAGAGAAGAAGTGAAAATGAAAAGGAGAGAAGAGCTTATGAGGTTTGGGTATCGGAGA 352
Query 506 TTATGCTTCAGCAAACTAGGGTTCAGACTGTAATGAAGTATTATAAACGTTGGATGCAGA 565
||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| | |
Sbjct 353 TTATGCTCCAGCAAACTAGGGTTCAGACTGTAATGGACTATTATAAACGTTGGATGAATA 412
Query 566 AATGGCCAACCATTTATGACCTTGGTCAAGCTTCTCTTGA-G-AAT-CTTATCGTTAGTA 622
|||||||||||||||||||||||| ||||||||||||||| | ||| | | || |
Sbjct 413 AATGGCCAACCATTTATGACCTTGCTCAAGCTTCTCTTGAGGAAATGGGAAAAGATA--A 470
Query 623 GATCAAG--AGAGCTTTCTTTTCTTAGGGGGAATGAG-AAAAAAGAGGTAAACGAAATGT 679
||| ||| ||||||| ||| |||| | || | ||| ||||||||||||||||
Sbjct 471 GATGAAGAAAGAGCTTGCTTATCTT---TGTTTTG-GCAAATTGGAGGTAAACGAAATGT 526
Query 680 GGGCAGGTTTGGGATACTATCGGCGGGCACGTTTTCTTTTAGAGGGTGCAAAGATGGTTG 739
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 527 GGGCAGGTTTGGGATACTATCGGCGGGCACGTTTTCTTTTAGAGGGAGCAAAGATGGTTG 586
Query 740 TTGCAGGGACGGAGGGTTTCCCTAATCAAGCGTCTAGCTTGATGAAAGTTAAAGGAATAG 799
||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 587 TTGCAGGGAAGGATGGTTTTCCTAATCAAGCATCTAGCTTGATGAAAGTTAAAGGAATAG 646
Query 800 GACAGTACACAGCCGGAGCAATTGCCTCAATTGCTTTCAATGAGGCAGTACCTGTTGTTG 859
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GAGAGTATACAGCCGGAGCAATTGCCTCAATTGCTTTCAATGAGGCAGTACCTGTTGTTG 706
Query 860 ATGGAAATGTGATAAGAGTGCTTGCTAGATTAAAAGCCATCTCAGCTAATCCAAAAGACC 919
||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 707 ATGGAAACGTGATTAGAGTGCTTGCCAGATTAAAGGCCATCTCTGCTAATCCAAAAGACC 766
Query 920 GACTTACGGCCAGGAATTTCTGGAAACTAGCTGCTCAGCTAGTGGATCCTTCACGCCCTG 979
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 767 GGCTTACGGCCAGGAATTTCTGGAAACTAGCTGCCCAGCTAGTGGATCCTTCACGTCCTG 826
Query 980 GAGATTTCAACCAATCTCTGATGGAGCTTGGTGCTACACTATGCACTGTATCAAAGCCAA 1039
||||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||
Sbjct 827 GAGATTTCAACCAATCTCTAATGGAGCTTGGTGCGACTCTATGCTCTGTATCAAAGCCAA 886
Query 1040 GTTGCTCTTCTTGTCCTGTTTCCAGCCAATGTCGTGCATTTTCACTTTCCGAGGAAAACA 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GTTGCTCTTCTTGTCCTGTTTCCAGCCAATGTCGTGCATTTTCACTTTCCGAGGAAAACA 946
Query 1100 GAACGATTTCCGTGACAGATTATCCTACAAAAGTAATCAAGGCCAAGCCAAGGCACGACT 1159
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 947 GAACGATTTCCGTGACGGATTATCCTACAAAAGTGATCAAGGCCAAGCCAAGGCGCGACT 1006
Query 1160 TTTGTTGCGTTTGTGTTTTGGAGATACAT-AATCTGGAGAGGAACCAATCAGGAGGTAGA 1218
|||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct 1007 TTTGTTGCGTATGTGTTTTGGAGATAC-TGAATCAGGAGAGGAACCAATCAGGAGGTAGA 1065
Query 1219 TTTGTTCTTGTAAAAAGACCCGAACAAGGTCTGCTTGCTGGTCTTTGGGAGTTCCCATCT 1278
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TTTGTTCTTGTAAAGAGACCCGAACAAGGTCTGCTTGCTGGTCTTTGGGAGTTCCCATCT 1125
Query 1279 GTTATATTAAATGAGGAAGCTGATTCGGCAACAAGGAGGAACGCAATAAACGTCTACCTT 1338
|||||||| |||||||| |||||||| |||||||||||| ||| || ||| ||| ||||
Sbjct 1126 GTTATATTGGATGAGGAACCTGATTCGCCAACAAGGAGGAGCGCGATCAACCTCTTCCTT 1185
Query 1339 AAGGAAGCATTTCGTTTTCATGTAGAACTCAAGAAAGCATGCACTATAGTTTCAAGAGAA 1398
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1186 AAGGAAGCATTTC------ATGTAGAACCCAAGAAAATATGCACTATAGTTTCAAGAGAA 1239
Query 1399 GAACTCGGAGAATTCGTCCACATATTCACTCACATTCGTCGAAAAGTTTATGTGGAGCTA 1458
||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 1240 GAACTTGGAGAATTCGTCCACGTCTTCACTCACATACGTCGAAAAGTTTATGTGGAGCTA 1299
Query 1459 TTAGTTGTACAACTTACAGGCGGAACCGAAGATCTGTTCAAAGGTCAGGCAAAGGACACT 1518
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |
Sbjct 1300 TTAGTTGTACAACTTACAGGTGGAACCAAAGATCTGTTCAAAGGTCAGGCAAAGGTCAGT 1359
Query 1519 CTAACATGGAAGTGTGTGAGCAGTGATGTTCTTTCTACCTTGGGACTGACATCAGCTGTT 1578
|||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||
Sbjct 1360 CTAACATGGAAGTGTGTGGGAAGTGATGTTCTTTCTACCATGGGACTGACATCGGCTGTT 1419
Query 1579 AGAAAGGTACCTCCTTTTC-GTCTTCAA--CATATTAAAAGACTATCCTTGGATGTGAT 1634
||||||||| ||||||||| |||||||| |||| |||||| ||||||||||||||||
Sbjct 1420 AGAAAGGTATCTCCTTTTCCGTCTTCAAATCATAGAAAAAGATTATCCTTGGATGTGAT 1478
Score = 228 bits (123), Expect = 1e-58
Identities = 171/192 (89%), Gaps = 12/192 (6%)
Strand=Plus/Plus
Query 1 ATGGCTTGTCTTCTCCGCGTGGCTCTAAACCCTACATTCGAAAGATCAACGGTCGCTTCA 60
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTTGTCTTCTTCGCGTGGCTCTAAACCCTACATTTGAAAGATCAACGGTCGCTTCA 60
Query 61 CAGAGACAAAATCCAAAGACCATTCTAAGTTTTCATTGCAAAGTTTCGAGCTTTAAGACC 120
||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 61 GAGAGACAAAATCC-AAG----TTC-------TCATTGCAAAGTTTCGAGCTTTAAGACC 108
Query 121 AAAACGATGTCCCAATCTTTTGCTCCTCGCGagaaactcatgagaaagtgtcgagagaaa 180
||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 109 AAAACGATGTCGCAATCTTCTGCTCCTGGCGAGAAACTCATGAGAAAGTGTCGAAAGAAA 168
Query 181 aaagaagcagaa 192
||| ||| ||||
Sbjct 169 AAAAAAGAAGAA 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5