BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12760.1
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497127 jgi|Araly1|497127|fgenesh2_kg.9__92__AT4G12760.1 1112 0.0
> Ahg497127 jgi|Araly1|497127|fgenesh2_kg.9__92__AT4G12760.1
Length=823
Score = 1112 bits (602), Expect = 0.0
Identities = 767/843 (91%), Gaps = 26/843 (3%)
Strand=Plus/Plus
Query 27 GGAGAAATTGGCAAAAACAGCTTCGACAATTCCGAAACGGACCTCAAATAAATCCCAACC 86
|||| ||||||||||| |||||||| |||||||||| ||||||||||| |||||||| ||
Sbjct 6 GGAGGAATTGGCAAAACCAGCTTCGTCAATTCCGAAGCGGACCTCAAAGAAATCCCAGCC 65
Query 87 CGATTTTGATTACTCTATAAGGAAGCAAAAGTTCAGAGAGAATTGCTTCAGAAGAGTTAG 146
||| || |||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 66 CGAATTCGATTACTCTACAAGGAAACAAAAGTTCAGAGAAAATTGCTTCAGAAGAGTTAG 125
Query 147 AGAAGATAGGACTCGTTTACTATGGAAATTAAGGATCTCTGATTGTCAATCTTCAGATCA 206
||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 126 AGAAGATAGGACTCGTTTACTGTGGAAATTGAGGCTCTCTGATTGTCAATCTTCAGATCA 185
Query 207 AAAGGAGATTATAAATTGTGCTTTCCAAGATATTGTTTCTGATGAATTGAAAAAGATTGA 266
|||||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct 186 AAAGGAGATTATCAATTCTGCTTTCCAGGATATTGTTTCTGATGAACTGAAAAAGATTGA 245
Query 267 GGATTCGTCGAGAAACCTTTCGGGGAATAAGACTCTGACTGAAGATTGTGATGATATATT 326
|||||||||||||||||| || | | || |||||||||||||||||||||||||
Sbjct 246 GGATTCGTCGAGAAACCTCTC---G-A-CAG----TGACTGAAGATTGTGATGATATATT 296
Query 327 ATGGGAATATGAGGAAGGTCTTAAAGGTGTTTATGAAGGTGATAGTGAAGAGATATTGTT 386
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 ATGGGAATATGAGGAGGGTCTTAAAGGTGTTTATGAAGGTGATAGTGAAGATATATTGTT 356
Query 387 AGAAATGCAACAGATATTCTATAAGGATTTGTTATCAGAGACTAACGTAAATGGATCATT 446
||||||||||||||||||||| ||||||||||||| |||| ||| | |
Sbjct 357 AGAAATGCAACAGATATTCTACAAGGATTTGTTAT--TAGAC-AAC-------G---A-- 401
Query 447 TGTTCAGGTTGAAACATGGGAAGACGAGGAAGATGATTACTTGGCCGCTTTAGTTTCTCA 506
||||||| | |||||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 402 TGTTCAGATCGAAACATGGGAAGACGAGCAAGATGGTTACTTGGCCGCCTTAGTTTCTCA 461
Query 507 GAATATGTGTTTAAACAGTGAACAGGAGGAAAGCCAGATATGGTGTCCGATATGCAAGAA 566
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 462 GAATATGTGTTTAAACAGTGAACAGGAGCAAAACCAGATATGGTGTCCGTTATGCAAGAA 521
Query 567 AGGAGAGCTTATGGAGAATCACAGACATATCGATTGCAACATGTGTGATATGCAGCTTAA 626
||||||||||||||||||| || |||| ||| |||||||||||||||| |||||||||||
Sbjct 522 AGGAGAGCTTATGGAGAATAACCGACACATCTATTGCAACATGTGTGAAATGCAGCTTAA 581
Query 627 TAAAGGCGAAGAGGTTAATTTGAACATTCTGCAAGAAAGGTTAGCAGAAGCGCACGGTGA 686
||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||
Sbjct 582 TAAAGGCGAAGAGGTTAATCTGAATATTTTGCAAGAAAGGTTAGCAGAAGCGCACGCTGA 641
Query 687 ACATCTCCAGAGAGGATGCAGATTAAAACCCGAATTCAGTGTTCAGAGTGTGTATAATTT 746
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 642 ACATCTCGAGAGAGGATGCAGATTAAAACCCAAATTCAGTGTTCAGAGTGTGTATAATTT 701
Query 747 GAAGGCTTTGTACATAACATGTGAGGCTTGTAAAACGTTTGAGGTTGTTGTATAAAGCTC 806
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 702 GAAGGCGTTGTACATAACATGCGAGGCTTGTAATACGTTTGAGGTTGTTGTATAAAGCTC 761
Query 807 TTAACTTAAAGAAGGATACACATCATTTCTCATGTATAC-CACTCGAGATCATTGTAGGT 865
|||||||||||||||||||||||||||| || | ||| | |||||||||||||| |||||
Sbjct 762 TTAACTTAAAGAAGGATACACATCATTTATCCTCTAT-CTCACTCGAGATCATTATAGGT 820
Query 866 TAG 868
|||
Sbjct 821 TAG 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35835541980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5