BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12780.1
Length=3218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333056 jgi|Araly1|333056|fgenesh1_pm.C_scaffold_9000084 3461 0.0
Ahg497125 jgi|Araly1|497125|fgenesh2_kg.9__90__AT4G12770.1 2846 0.0
> Ahg333056 jgi|Araly1|333056|fgenesh1_pm.C_scaffold_9000084
Length=2763
Score = 3461 bits (1874), Expect = 0.0
Identities = 2210/2367 (93%), Gaps = 43/2367 (2%)
Strand=Plus/Plus
Query 154 ATGGATGATTTCACAGGATTGTTAGCGAGAGACTTCGGATTGAAACCTCAGGGAAAATCA 213
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGGATGATTTCACAGGATTGTTAGCGAGAGACTTCGGTTTGAAACCTCAGGGCAAATCA 60
Query 214 GCTCCCATGGCGT-CTCAATCGAACTCTTCTGCCGCTGATTTCAACACTTTCGCTTCTTC 272
||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 61 GCTCCCATGGC-TGCTCAATCGAACTCTTCTGCTTCTGATTTCAACAGTTTCGCTTCTTC 119
Query 273 TTATAGCTTCGCCACCGCCGCCGGTAAAAAGTCCGATTCTTTGCCGGTGTTTGACGATCC 332
|||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 120 TTATAGCTTCGCCAACGCCGCCGGTAAAAAGTCGGAATCTTTGCCGGTGTTTGACGATCT 179
Query 333 TGGTCGAGATGGTGATGATCTTCTCTTCAAAGATGTGTTTAGTGGACCACCACCACCAAA 392
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 180 TGGTCGAGATGGTGATGATCTTCTCTTCAAAGATGTGTTTAGCGG---ACCACCACCAAA 236
Query 393 GTACGGATCTTCTTCTGGTGATTCACGTTCTCCATCTGCTCCTGCTTTTGACTATGATGC 452
||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||||||||||
Sbjct 237 GTACGGATCCTCTTCTGGGGATTCTCGTTCTCCACCTGCTTCTGCTTTTGACTATGATGC 296
Query 453 TATGTTCAAGGAACCCAAATCCAAATCAGCGTCGTCTATGCCGGTTTATGACAAGCCTGT 512
||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 297 TATGTTCAAGGAACCCAAATCCAAACCGGCGTCGTCCATGCCGGTCTATGACAAGCCTGT 356
Query 513 GTATGATGATGAGGATGTGTTTGAGTCTATTCCTGAGCTCAAAATCCCTTCCACTTCTTC 572
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 GTATGATGATGAGGATGTGTTTGAGTCTATTCCTGAGCTCAAAATCCCATCCACTTCTTC 416
Query 573 TCAGTCAGCTAGGTTTGA-GAATGTTTTCTCTTCTATCTCATCTTCTCCTACGAAGCACA 631
||| || ||||||||||| | ||| ||| || || | ||| | ||||| |||||||
Sbjct 417 TCAATCTGCTAGGTTTGATG-ATG-TTT-TC-TC--T-TCA-C--CTCCT---AAGCACA 463
Query 632 GGAAACAGAACAGTTCTCCTTTCGATGATCTCATGGGAAACAATTTGGGGAAGAAAGGGG 691
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||
Sbjct 464 GGAAACAGAACAGTTCTCCTTTTGATGATCTCATGGGCAACAATTTGGGGAAGAGAGGGA 523
Query 692 CAGATAGTGACCGAGAGGAGAAGGGTAGTTCCATTTTTGATGATTTGATTCCTGGGTTTG 751
|||| ||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||
Sbjct 524 CAGAGAGTGACCGAGAGGAGAAGGCTAGCTCCATTTTTGATGACTTGATTCCCGGGTTTG 583
Query 752 GTCGCACTAGCTCTCCTCCAT-CTAAGCGGACAACTTCAGAGACAACAAATCAATCCGAG 810
||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||| ||
Sbjct 584 GTCGCACTAGCTCTCCTCC-TCCTAAACGGAAAACTTCAGAGACAACAAATCAATCCCAG 642
Query 811 AAAGCTCCATATCGAACTGCCGAGACATCTTCCAATGTGGAAGAAGACCCGTTTGTAGTC 870
||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 643 AAACCTCCGTATCGGACTGCCGAGACATCTTCCAATGTGGAAGAAGACCCATTTGTAGTC 702
Query 871 TTGGAGGAGTCTGAATCAACCCCTAGAGAACCCTCC-C------G-T-ACTGATCCATTG 921
||||||||||||| |||||||||||||||||| ||| | | | ||||||||||||
Sbjct 703 TTGGAGGAGTCTGCATCAACCCCTAGAGAACCTTCCACGGGAGGGTTCACTGATCCATTG 762
Query 922 GACGATATTGGTAAATTCAACAGCAGAAAAACTGATCATTCATCTGTCCACGGAGGAGTA 981
|| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 763 GAGGATATTGGGAAATTCAACAGCAGAAAAACTGATCATTCATCTGTCCACAGAGGAGTG 822
Query 982 TTTGTTGATATTGACCCTCTTGATAATCTAGGAAAACCAGGGCCGGATATGAATAGTAAA 1041
|||||||||||||||||||| |||| ||| |||||| |||||||||||||||||| || |
Sbjct 823 TTTGTTGATATTGACCCTCTCGATAGTCTTGGAAAATCAGGGCCGGATATGAATAATAGA 882
Query 1042 GGGAAGAGTCATTTAAGACCACCAGGAAACATCAGTGGCTCCCAGTCACCACCAGTAGAA 1101
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GGCAAAAGTCATTTAAGACCACCAGGAAACATCAGTGGCTCCCAGTCACCACCAGTAGAA 942
Query 1102 AGCCCTGGGAGTTACCATTCTAAGAAAGTTTCATTTGAAGATTTTTTAGAGCCACATAAT 1161
|| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||
Sbjct 943 AGTCCTGGGAGTTACCATTCGAAGAAAGTTTCATTTGATGATGTTTTAGAGCCACAGAAT 1002
Query 1162 ATGAGTACTCCACCACCTACCAATTCAAATGGAAGTTTCGAGTCGTCTGATGATGTGTGG 1221
| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1003 ACGAGTACTCCGCCACCTACCAATTCAAATGGAAGTTTTGAGTCATCTGATGATGTGTGG 1062
Query 1222 CTTACTGTATCCGAGATCCCCCTCTTTACGCAACCTACGAGTGCTCCGCCACCTACGAGA 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CTTACTGTATCCGAGATCCCCCTCTTTACGCAACCTACGAGTGCTCCGCCACCTACGAGA 1122
Query 1282 CCTCCACCACCAAGACCTACACGTCCTATTAAAAAGAAGGTTAATGAGCCTTCTATACCG 1341
||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 1123 CCTCCACCACCAAGACCTACACGTCCTATAAAAAAGAGGGTTAACGAGCCTTCTATACCG 1182
Query 1342 ACGTCTGCTTACCACTCACACGTTCCTAGCTCAGGAAGAGCTTCTGTAAATAGCCCGACA 1401
|| ||| || ||||||||||| |||||||| ||| ||||||||||||||||||||| ||
Sbjct 1183 ACCTCTACTAACCACTCACACATTCCTAGCACAGCTAGAGCTTCTGTAAATAGCCCGGCA 1242
Query 1402 GCATCTCAAATGGATGAACTCGACGATTTTTCTATTGGCAGAAATCAGACCGCTGCGAAT 1461
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1243 GCATCTCAAATCGATGAACTCGAGGATTTTTCTATTGGCAGAAATCAGACCGCTGCTAAT 1302
Query 1462 GGATATCCTGATCCTTCCTCTGGTGAAGATTCAGATGTTTTTTCTACTGCCGCTGCATCA 1521
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1303 GGATATCCTGATCCTCCCTCTGGTGAAGATTCAGATGTTTTTTCTGCTGCCGCTGCATCA 1362
Query 1522 GCTGCTGCCATGAAGGATGCCATGGATAAAGCAGAAGCAAAGTTTAGGCATGCTAAGGAA 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GCTGCTGCCATGAAGGATGCCATGGATAAAGCAGAAGCAAAGTTTAGGCATGCTAAGGAA 1422
Query 1582 AGGAGAGAGAAAGAAAATTTGAAAGCAAGTAGAAGTAGAGAAGGAGATCACACAGAAAAT 1641
||||||| ||||||||||||||| |||||||||| |||||||| |||||| ||||| |||
Sbjct 1423 AGGAGAGTGAAAGAAAATTTGAAGGCAAGTAGAAATAGAGAAGAAGATCAAACAGAGAAT 1482
Query 1642 TATGATTCTCGTGAAAGGGAACTTAGAGAAAAGCAAGTGAGATTGGACCGTgagagggca 1701
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1483 TATGATTCTCGTGAAAGGGAACTTAGAGAAAATCAAGTGAGATTGGACCGTGAAAGGGCA 1542
Query 1702 gagagggaggcagagatggaaaaagcccaggagagggagaaagaggagagagaaagagag 1761
||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 1543 GAGAGGGAGGCAGAGATGGTAAAAGAGCAGGAGAGGGAGAGAGAGGAGAGAGAAAGAGAG 1602
Query 1762 cagaaaagaattgaaagagaaagggaaagaTTGGTGGCTAGACAGGCGGTAGAGAGGGCT 1821
||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1603 CAGAAGAGAATTGAGAGAGAAAGGGAAAGACTGTTGGCTAGACAGGCGGTAGAGAGGGCT 1662
Query 1822 ACAAGGGAAGCACGCGAAAGAGCAGCCACGGAAGCTCATGCGAAAGTTCAAAGAGCTGCT 1881
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1663 ACAAGGGAAGCACGCGAAAGAGCAGCCACTGAAGCTCATGCGAAAGTTCAAAGAGCTGCT 1722
Query 1882 GTTGGAAAGGCTACCGATGCCCGAGAGCGCGCCGAAAGAGCAGCAGTTCAAAGAGCGCAT 1941
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1723 GTTGGGAAGGCTACCGATGCCCGAGAGCGCGCCGAAAGAGCAGCGGTTCAAAGAGCCCAT 1782
Query 1942 GCTGAAGCACGTGAAAGGGCAGCTGCAGGGGCAAGAGATAAGGCGGCGAAAGCTGCGGCA 2001
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1783 GCTGAAGCACGTGAAAGGGCAGCTGCAGGGGCAAGAGAAAAGGCTGCGAAAGCTGCGGCA 1842
Query 2002 GAAGCTAGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAAAGAAAGGGCGAATGCTGAA 2061
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1843 GAAGCTAGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAGAGAAAGGGTGAATGCTGAA 1902
Query 2062 GCGCGGGAGAAGGAAACAAGGGTTAGGGCTGAACGAGCTGCTGTGGAAAGGGCAGCTGCT 2121
||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1903 GCGCGGGAGAAGGAAGCAAGGGTTAGGGCAGAACGAGCTGCTGTGGAAAGAGCAGCTGCT 1962
Query 2122 GAGGCACGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATACCAAT 2181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1963 GAGGCACGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATAACAAT 2022
Query 2182 GATCTTGACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACC 2241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 GATCTTGACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACC 2082
Query 2242 AACCCTCTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAGG 2301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2083 AACCCTCTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGAAGG 2142
Query 2302 GAATCTTTGCGAGTGCCTCCTGGCCA-ACCAGAGAACTTGAGAAAGACCTCTTCAGTAAC 2360
||||||| |||||||||| |||||| || |||||| ||||||||| |||||||||||||
Sbjct 2143 GAATCTTCGCGAGTGCCTTCTGGCCCTAC-AGAGAATTTGAGAAAGGCCTCTTCAGTAAC 2201
Query 2361 AAACATTGTTGATGATCTCAGTTCAATTTTTGGAG------C--TT-C--AGCTTCCCAA 2409
||||||||||||||||||||||||||| ||||||| | || | |||| |||||
Sbjct 2202 AAACATTGTTGATGATCTCAGTTCAATATTTGGAGGTAGTGCAATTTCTGAGCTACCCAA 2261
Query 2410 TCTGGTGGGTTTCAAGATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGACTGGAA 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2262 TCTGGTGGGTTTCAAGATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGGCTGGAA 2321
Query 2470 CGCCACCAGAGGACACAGGAGCGGGCT 2496
|||||||||||||||||||||||||||
Sbjct 2322 CGCCACCAGAGGACACAGGAGCGGGCT 2348
Score = 549 bits (297), Expect = 4e-155
Identities = 346/370 (94%), Gaps = 2/370 (1%)
Strand=Plus/Plus
Query 2500 AAAGCACTTGCTGAGAAAAATGAACGTGATCTTCAAGTACAAAGAGAACAAGTTGAGAAA 2559
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 2395 AAAGCACTTGCTGAGAAAAATGAACGTGATCTACAAGTACAAAGAGAACAAGCTGAGAAA 2454
Query 2560 GATAGGATTGGGGTGACTCTGGATGTTGAGATAAAACGTTGGGGTGCGGGGAAGGAGGGA 2619
||||||||||| | ||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2455 GATAGGATTGGTGAGACCCTGGATGTTGAGATAAGACGTTGGGGTGCAGGGAAGGAGGGA 2514
Query 2620 AACCTGCGAGCTCTGCTTTCGACATTACAATATGTTCTTTGGCCAGAATGTGGTTGGCAA 2679
||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2515 AACTTGCGTGCTCTGCTTTCGACATTACAATATGTTCTATGGCCAGAATGCGGTTGGCAG 2574
Query 2680 CCTGTTTCATTGACTGATTTAATTA-CGGCTGCGTCTGTCAAGAAAGTTTACAGGAAGGC 2738
|||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 2575 CCTGTTTCATTGACCGATTTAATTACCGG-AGCATCTGTCAAGAAAGTTTACAGGAAGGC 2633
Query 2739 CACTCTATGTATACACCCTGATAAAGTTCAGCAAAAAGGAGCCAATCTCCAGCAGAAATA 2798
|||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2634 CACTCTCTGTATACATCCTGACAAAGTTCAGCAAAAAGGGGCCAATCTCCAGCAGAAATA 2693
Query 2799 CATTGCCGAGAAAGTTTTTGACATGCTCAAGGAAGCATGGAACAAGTTTAACTCAGAAGA 2858
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2694 CATTGCCGAGAAAGTTTTCGACATGCTCAAGGAAGCATGGAACAAGTTCAACTCAGAAGA 2753
Query 2859 ACTCTTCTGA 2868
|||||| |||
Sbjct 2754 ACTCTTTTGA 2763
> Ahg497125 jgi|Araly1|497125|fgenesh2_kg.9__90__AT4G12770.1
Length=3128
Score = 2846 bits (1541), Expect = 0.0
Identities = 1874/2030 (92%), Gaps = 41/2030 (2%)
Strand=Plus/Plus
Query 6 AAGaaaaaaaGAGAGCTTTTTTAAAAATCAAATGCTTTGATCCGATTCGTTAATGGCGAC 65
||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 7 AAG-AAAAAAGAGAGCTCTTTT-GAAATCAAATGCTTTGATCTGATTCGTTAATGGCGAC 64
Query 66 TCAGATCTGAAGATAATCTCTTCTTCATTTCTGGTGGGCAAAATCTAAAGCTTTTCGAAT 125
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 65 TCAGATCTGAAGATAATCTCATCTTCATTTCTGGTGGGC-AAATCTAAAGCTTTTCGATT 123
Query 126 TCGGAGCTAGA-GAATTTAAAGGAATCCAATGGATGATTTCACAGGATTGTTAGCGAGAG 184
|||||| |||| ||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 124 TCGGAGGTAGAGGAA-TTGAAGGAACCCAATGGATGATTTCACAGGATTGTTAGCGAGAG 182
Query 185 ACTTCGGATTGAAACCTCAGGGAAAATCAGCTCCCATGGCGT-CTCAATCGAACTCTTCT 243
|||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 183 ACTTCGGATTCAAACCTCAGGGCAAATCAGCTCCCATGGC-TGCTCAATCGAACTCTTCT 241
Query 244 GCCGCTGATTTCAACACTTTCGCTTCTTCTTATAGCTTCGCCACCGCCGCCGGTAAAAAG 303
|| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 242 GCTTCTGATTTCAACAGTTTCGCTTCTTCTTATAGCTTCGCCAACGCCGCCGGTAAAAAG 301
Query 304 TCCGATTCTTTGCCGGTGTTTGACGATCCTGGTCGAGATGGTGATGATCTTCTCTTCAAA 363
|| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 302 TCGGAATCTTTGCCGGTGTTTGACGATCTTGGTCGAGATGGTGATGATCTTCTCTTCAAA 361
Query 364 GATGTGTTTAGTGGACCACCACCACCAAAGTACGGATCTTCTTCTGGTGATTCACGTTCT 423
||||||||||| || ||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 362 GATGTGTTTAGCGG---ACCACCACCAAAGTACGGATCCTCTTCTGGGGATTCTCGTTCT 418
Query 424 CCATCTGCTCCTGCTTTTGACTATGATGCTATGTTCAAGGAACCCAAATCCAAATCAGCG 483
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 419 CCACCTGCTTCTGCTTTTGACTATGATGCTATGTTCAAGGAACCCAAATCCAAACCGGCG 478
Query 484 TCGTCTATGCCGGTTTATGACAAGCCTGTGTATGATGATGAGGATGTGTTTGAGTCTATT 543
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCGTCCATGCCGGTCTATGACAAGCCTGTGTATGATGATGAGGATGTGTTTGAGTCTATT 538
Query 544 CCTGAGCTCAAAATCCCTTCCACTTCTTCTCAGTCAGCTAGGTTTGA-GAATGTTTTCTC 602
||||||||||||||||| |||||||||||||| || ||||||||||| | ||| ||| ||
Sbjct 539 CCTGAGCTCAAAATCCCATCCACTTCTTCTCAATCTGCTAGGTTTGATG-ATG-TTT-TC 595
Query 603 TTCTATCTCATCTTCTCCTACGAAGCACAGGAAACAGAACAGTTCTCCTTTCGATGATCT 662
|| | ||| | ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 596 -TC--T-TCA-C--CTCCT---AAGCACAGGAAACAGAACAGTTCTCCTTTTGATGATCT 645
Query 663 CATGGGAAACAATTTGGGGAAGAAAGGGGCAGATAGTGACCGAGAGGAGAAGGGTAGTTC 722
|||||| |||||||||||||||| |||| |||| ||||||||||||||||||| ||| ||
Sbjct 646 CATGGGCAACAATTTGGGGAAGAGAGGGACAGAGAGTGACCGAGAGGAGAAGGCTAGCTC 705
Query 723 CATTTTTGATGATTTGATTCCTGGGTTTGGTCGCACTAGCTCTCCTCCAT-CTAAGCGGA 781
|||||||||||| |||||||| |||||||||||||||||||||||||| | |||| ||||
Sbjct 706 CATTTTTGATGACTTGATTCCCGGGTTTGGTCGCACTAGCTCTCCTCC-TCCTAAACGGA 764
Query 782 CAACTTCAGAGACAACAAATCAATCCGAGAAAGCTCCATATCGAACTGCCGAGACATCTT 841
|||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||
Sbjct 765 CAACTTCAGAGACAACAAATCAATCCCAGAAACCTCCGTATCGGACTGCCGAGACATCTT 824
Query 842 CCAATGTGGAAGAAGACCCGTTTGTAGTCTTGGAGGAGTCTGAATCAACCCCTAGAGAAC 901
||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct 825 CCAATGTGGAAGAAGACCCATTTGTAGTCTTGGAGGAGTCTGCATCAAGCCCTAGAGAAC 884
Query 902 CCTCC-C------G-T-ACTGATCCATTGGACGATATTGGTAAATTCAACAGCAGAAAAA 952
| ||| | | | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 885 CTTCCACGGGAGGGTTCACTGATCCATTGGAGGATATTGGTAAATTCAACAGCAGAAAAA 944
Query 953 CTGATCATTCATCTGTCCACGGAGGAGTATTTGTTGATATTGACCCTCTTGATAATCTAG 1012
||| ||||||||||||||| |||||| |||| ||| | ||| ||||| ||| ||| |
Sbjct 945 CTG---ATTCATCTGTCCACGAAGGAGTGTTTGCTGACACTGATCCTCTAAATAGTCTTG 1001
Query 1013 GAAAACCAGGGCCGGATATGAATAGTAAAGGGAAGAGTCA-TTTAAGACCACCAGGAAAC 1071
||||||||||||| ||||||||||||| ||| |||||| | |||||||||||||||||||
Sbjct 1002 GAAAACCAGGGCCAGATATGAATAGTAGAGGCAAGAGT-ATTTTAAGACCACCAGGAAAC 1060
Query 1072 ATCAGTGGCTCCCAGTCACCACCAGTAGAAAGCCCTGGGAGTTACCATTCTAAGAAAGTT 1131
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1061 ATCAGTGGCTCCCAGTCACCACCAGTAGAAAGTCCTGGGAGTTACCGTTCTAAGAAAGTT 1120
Query 1132 TCATTTGAAGATTTTTTAGAGCCACATAATATGAGTACTCCACCACCTACCAATTCAAAT 1191
|||||||| ||| |||||||||||| |||| |||| |||| |||||||||| |||||||
Sbjct 1121 TCATTTGATGATGTTTTAGAGCCACGGAATACGAGTGCTCCGCCACCTACCAGTTCAAAT 1180
Query 1192 GGAAGTTTCGAGTCGTCTGATGATGTGTGGCTTACTGTATCCGAGATCCCCCTCTTTACG 1251
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1181 GGAAGTTTTGAGTCATCTGATGATGTTTGGCTTACTGTATCCGAGATCCCCCTCTTTACG 1240
Query 1252 CAACCTACGAGTGCTCCGCCACCTACGAGACCTCCACCACCAAGACCTACACGTCCTATT 1311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CAACCTACGAGTGCTCCGCCACCTACGAGACCTCCACCACCAAGACCTACACGTCCTATA 1300
Query 1312 AAAAAGAAGGTTAATGAGCCTTCTATACCGACGTCTGCTTACCACTCACACGTTCCTAGC 1371
||||||| |||||| ||||||||||||||||| ||| || ||||||||||||||| ||||
Sbjct 1301 AAAAAGAGGGTTAACGAGCCTTCTATACCGACCTCTACTAACCACTCACACGTTCTTAGC 1360
Query 1372 TCAGGAAGAGCTTCTGTAAATAGCCCGACAGCATCTCAAATGGATGAACTCGACGATTTT 1431
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1361 ACAGCTAGAGCTTCTGTAAATAGCCCGACAGCATCTCAAATGGATGAACTTGACGATTTT 1420
Query 1432 TCTATTGGCAGAAATCAGACCGCTGCGAATGGATATCCTGATCCTTCCTCTGGTGAAGAT 1491
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1421 TCTATTGGCAGAAATCAGACCGCTGCTAATGGATATCCTGATCCTCCCTCTGGTGAAGAT 1480
Query 1492 TCAGATGTTTTTTCTACTGCCGCTGCATCAGCTGCTGCCATGAAGGATGCCATGGATAAA 1551
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TCAGATATTTTTTCTGCTGCCGCTGCATCAGCTGCTGCCATGAAGGATGCCATGGATAAA 1540
Query 1552 GCAGAAGCAAAGTTTAGGCATGCTAAGGAAAGGAGAGAGAAAGAAAATTTGAAAGCAAGT 1611
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1541 GCAGAAGCAAAGTTTAGGCATGCTAAGGAAAGGAGAGTGAAAGAAAATTTGAAGGCAAGT 1600
Query 1612 AGAAGTAGAGAAGGAGATCACACAGAAAATTATGATTCTCGTGAAAGGGAACTTAGAGAA 1671
|||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1601 AGAAATAGAGAAGAAGATCAAACAGAGAATTATGATTCTCGTGAAAGGGAACTTAGAGAA 1660
Query 1672 AAGCAAGTGAGATTGGACCGTgagagggcagagagggaggcagagatggaaaaagcccag 1731
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 1661 AATCAAGTGAGATTGGACCGTGAAAGGGCAGAGAGGGAGGCAGAGATGGTAAAAGAGCAG 1720
Query 1732 gagagggagaaagaggagagagaaagagagcagaaaagaattgaaagagaaagggaaaga 1791
|||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1721 GAGAGGGAGAGAGAGGAGAGAGAAAGAGAGCAGAAGAGAATTGAGAGAGAAAGGGAAAGA 1780
Query 1792 TTGGTGGCTAGACAGGCGGTAGAGAGGGCTACAAGGGAAGCACGCGAAAGAGCAGCCACG 1851
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1781 CTGTTGGCTAGACAGGCGGTAGAGAGGGCTACAAGAGAAGCACGCGAAAGAGCAGCCACT 1840
Query 1852 GAAGCTCATGCGAAAGTTCAAAGAGCTGCTGTTGGAAAGGCTACCGATGCCCGAGAGCGC 1911
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1841 GAAGCTCATGCGAAAGTTCAAAGAGCTGCTGTTGGGAAGGCTACCGATGCCCGAGAACGC 1900
Query 1912 GCCGAAAGAGCAGCAGTTCAAAGAGCGCATGCTGAAGCACGTGAAAGGGCAGCTGCAGGG 1971
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1901 GCCGAAAGAGCAGCGGTTCAAAGAGCCCATGCTGAAGCACGTGAAAGGGCAGCTGCAGGG 1960
Query 1972 GCAAGAGATAAGGCGGCGAAAGCTGCGGCAGAAGCTAGAGAAAAGGCTGA 2021
|||||||| ||||| |||||||||||||||||||||||||||| || |||
Sbjct 1961 GCAAGAGAAAAGGCTGCGAAAGCTGCGGCAGAAGCTAGAGAAAGGG-TGA 2009
Score = 1628 bits (881), Expect = 0.0
Identities = 1111/1212 (92%), Gaps = 55/1212 (5%)
Strand=Plus/Plus
Query 2008 AGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAAAGAAAGGGCGAATGCTGAAGCGCGG 2067
||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct 1964 AGAGAAAAGGCTGCGAAAGCTGCGGCAGAAGCTAGAGAAAGGGTGAATGCTGAAGCGCGG 2023
Query 2068 GAGAAGGAAACAAGGGTTAGGGCTGAACGAGCTGCTGTGGAAAGGGCAGCTGCTGAGGCA 2127
||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2024 GAGAAGGAAGCAAGGGTTAGGGCAGAACGAGCTGCTGTGGAAAGGGCCGCTGCTGAGGCA 2083
Query 2128 CGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATACCAATGATCTT 2187
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2084 CGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATAACAATGATCTT 2143
Query 2188 GACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACCAACCCT 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 GACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACCAACCCT 2203
Query 2248 CTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAGGGAATCT 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 CTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAGGGAATCT 2263
Query 2308 TTGCGAGTGCCTCCTGGCC-AACCAGAGAACTTGAGAAAGACCTCTTCAGTAACAAACAT 2366
| |||||||||| |||||| ||| |||||||||||||||| |||||||||||||||||||
Sbjct 2264 TCGCGAGTGCCTTCTGGCCCAAC-AGAGAACTTGAGAAAGGCCTCTTCAGTAACAAACAT 2322
Query 2367 TGTTGATGATCTCAGTTCAATTTTTGGAGCTTC-AGCTTCCCAATCTGGTGGGTTTCAAG 2425
||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||
Sbjct 2323 TGTTGATGATCTCAGTTCAATATTTGGAG-TTCCAGCTACCCAATCTGGTGGGTTTCAAG 2381
Query 2426 ATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGACTGGAACGCCACCAGAGGACAC 2485
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2382 ATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGGCTGGAACGCCACCAGAGGACAC 2441
Query 2486 AGGAGCGGGCTGCAAAAGCACTTGCTGAGAAAAATGAACGTGATCTTCAAGTACAAAGAG 2545
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2442 AGGAGCGGGCTGCAAAAGCACTTGCTGAGAAAAATGAACGTGATCTACAAGTACAAAGAG 2501
Query 2546 AACAAGTTGAGAAAGATAGGATTGGGGTGACTCTGGATGTTGAGATAAAACGTTGGGGTG 2605
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2502 AACAAGTTGAGAAAGATAGGATTGGGGTGACTTTGGATGTGGAGATAAAACGTTGGGGTG 2561
Query 2606 CGGGGAAGGAGGGAAACCTGCGAGCTCTGCTTTCGACATTACAATATGTTCTTTGGCCAG 2665
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2562 CAGGGAAGGAGGGAAACCTGCGAGCTCTGCTTTCGACATTACAATATGTTCTTTGGCCAG 2621
Query 2666 AATGTGGTTGGCAACCTGTTTCATTGACTGATTTAATTACGGCTGCGTCTGTCAAGAAAG 2725
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2622 AATGTGGTTGGCAGCCTGTTTCATTGACCGATTTAATTACGGCTGCATCTGTCAAGAAAG 2681
Query 2726 TTTACAGGAAGGCCACTCTATGTATACACCCTGATAAAGTTCAGCAAAAAGGAGCCAATC 2785
||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct 2682 TTTACAGGAAGGCCACTCTCTGTATACACCCTGACAAAGTTCAACAAAAAGGTGCCAATC 2741
Query 2786 TCCAGCAGAAATACATTGCCGAGAAAGTTTTTGACATGCTCAAGGAAGCATGGAACAAGT 2845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2742 TCCAGCAGAAATACATTGCCGAGAAAGTTTTTGACATGCTCAAGGAAGCATGGAACAAGT 2801
Query 2846 TTAACTCAGAAGAACTCTTCTGAGGAAATCATGGGGCTATGTTTTGAGATGTGTTTTTCG 2905
| ||||||||||||||||||||| ||| ||| | |||| | || | |
Sbjct 2802 TCAACTCAGAAGAACTCTTCTGAA-AAA--ATG----T-TGTTC-G---TG-G------G 2842
Query 2906 TGTGCCGCCCAAAAGATGA-TACATTTGGCATTCATTAAATAGCCAAAGATGATGCCCAA 2964
| | ||||| ||||||| | |||||||||||||||||||||||||| ||| |||||||
Sbjct 2843 T---C-GCCCATAAGATGAAT-CATTTGGCATTCATTAAATAGCCAAA-ATGGTGCCCAA 2896
Query 2965 GTTGGAGGCAGATAGTTGTGGATAGAGTATGTATTCCCAGGATTGATTACCCATCACTGC 3024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2897 GTTGGAGGCAGATAGTTGTGGATAGAGTATGTATTCCCAGGATTGATTACCCATCACTGC 2956
Query 3025 ATCATTATAGGCAGGCATCGCAGCAATTGGGCATTCtttttttGTCA--TTATCCTTCTC 3082
|||||||||| | |||||||| |||||||||||| |||||||| | || ||||| ||
Sbjct 2957 ATCATTATAG--A--CATCGCAGTAATTGGGCATTCATTTTTTGTTAAATTTTCCTTGTC 3012
Query 3083 GAGTCTTGTCCTTAAAGAGTACGATGTCAAAATGTA-GTGATGGTTATTTTTGTATCAAA 3141
| | | ||||| |||| | ||| | || | ||| | ||| | || |||
Sbjct 3013 -A-T-TA-TCCTTCTTGAGT-CTC-GTCCT--T-TAAGAAATG-T-ATT---G-ATGAAA 3057
Query 3142 AACACAATACTTGAGAGCTGTGTATTGTTGTTTCCAAACTATTTATATAT--GCATATAT 3199
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3058 A-CACAATACTTGAGAGCTGTGTATTGTTGTTTCCAAACTATTTATATATATGCATATAT 3116
Query 3200 GAATATTCTTTT 3211
||||||||||||
Sbjct 3117 GAATATTCTTTT 3128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121584062040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5