BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12780.1 Length=3218 Score E Sequences producing significant alignments: (Bits) Value Ahg333056 jgi|Araly1|333056|fgenesh1_pm.C_scaffold_9000084 3461 0.0 Ahg497125 jgi|Araly1|497125|fgenesh2_kg.9__90__AT4G12770.1 2846 0.0 > Ahg333056 jgi|Araly1|333056|fgenesh1_pm.C_scaffold_9000084 Length=2763 Score = 3461 bits (1874), Expect = 0.0 Identities = 2210/2367 (93%), Gaps = 43/2367 (2%) Strand=Plus/Plus Query 154 ATGGATGATTTCACAGGATTGTTAGCGAGAGACTTCGGATTGAAACCTCAGGGAAAATCA 213 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1 ATGGATGATTTCACAGGATTGTTAGCGAGAGACTTCGGTTTGAAACCTCAGGGCAAATCA 60 Query 214 GCTCCCATGGCGT-CTCAATCGAACTCTTCTGCCGCTGATTTCAACACTTTCGCTTCTTC 272 ||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 61 GCTCCCATGGC-TGCTCAATCGAACTCTTCTGCTTCTGATTTCAACAGTTTCGCTTCTTC 119 Query 273 TTATAGCTTCGCCACCGCCGCCGGTAAAAAGTCCGATTCTTTGCCGGTGTTTGACGATCC 332 |||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| Sbjct 120 TTATAGCTTCGCCAACGCCGCCGGTAAAAAGTCGGAATCTTTGCCGGTGTTTGACGATCT 179 Query 333 TGGTCGAGATGGTGATGATCTTCTCTTCAAAGATGTGTTTAGTGGACCACCACCACCAAA 392 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 180 TGGTCGAGATGGTGATGATCTTCTCTTCAAAGATGTGTTTAGCGG---ACCACCACCAAA 236 Query 393 GTACGGATCTTCTTCTGGTGATTCACGTTCTCCATCTGCTCCTGCTTTTGACTATGATGC 452 ||||||||| |||||||| ||||| ||||||||| ||||| ||||||||||||||||||| Sbjct 237 GTACGGATCCTCTTCTGGGGATTCTCGTTCTCCACCTGCTTCTGCTTTTGACTATGATGC 296 Query 453 TATGTTCAAGGAACCCAAATCCAAATCAGCGTCGTCTATGCCGGTTTATGACAAGCCTGT 512 ||||||||||||||||||||||||| | |||||||| |||||||| |||||||||||||| Sbjct 297 TATGTTCAAGGAACCCAAATCCAAACCGGCGTCGTCCATGCCGGTCTATGACAAGCCTGT 356 Query 513 GTATGATGATGAGGATGTGTTTGAGTCTATTCCTGAGCTCAAAATCCCTTCCACTTCTTC 572 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 357 GTATGATGATGAGGATGTGTTTGAGTCTATTCCTGAGCTCAAAATCCCATCCACTTCTTC 416 Query 573 TCAGTCAGCTAGGTTTGA-GAATGTTTTCTCTTCTATCTCATCTTCTCCTACGAAGCACA 631 ||| || ||||||||||| | ||| ||| || || | ||| | ||||| ||||||| Sbjct 417 TCAATCTGCTAGGTTTGATG-ATG-TTT-TC-TC--T-TCA-C--CTCCT---AAGCACA 463 Query 632 GGAAACAGAACAGTTCTCCTTTCGATGATCTCATGGGAAACAATTTGGGGAAGAAAGGGG 691 |||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| Sbjct 464 GGAAACAGAACAGTTCTCCTTTTGATGATCTCATGGGCAACAATTTGGGGAAGAGAGGGA 523 Query 692 CAGATAGTGACCGAGAGGAGAAGGGTAGTTCCATTTTTGATGATTTGATTCCTGGGTTTG 751 |||| ||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||| Sbjct 524 CAGAGAGTGACCGAGAGGAGAAGGCTAGCTCCATTTTTGATGACTTGATTCCCGGGTTTG 583 Query 752 GTCGCACTAGCTCTCCTCCAT-CTAAGCGGACAACTTCAGAGACAACAAATCAATCCGAG 810 ||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||| || Sbjct 584 GTCGCACTAGCTCTCCTCC-TCCTAAACGGAAAACTTCAGAGACAACAAATCAATCCCAG 642 Query 811 AAAGCTCCATATCGAACTGCCGAGACATCTTCCAATGTGGAAGAAGACCCGTTTGTAGTC 870 ||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 643 AAACCTCCGTATCGGACTGCCGAGACATCTTCCAATGTGGAAGAAGACCCATTTGTAGTC 702 Query 871 TTGGAGGAGTCTGAATCAACCCCTAGAGAACCCTCC-C------G-T-ACTGATCCATTG 921 ||||||||||||| |||||||||||||||||| ||| | | | |||||||||||| Sbjct 703 TTGGAGGAGTCTGCATCAACCCCTAGAGAACCTTCCACGGGAGGGTTCACTGATCCATTG 762 Query 922 GACGATATTGGTAAATTCAACAGCAGAAAAACTGATCATTCATCTGTCCACGGAGGAGTA 981 || |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 763 GAGGATATTGGGAAATTCAACAGCAGAAAAACTGATCATTCATCTGTCCACAGAGGAGTG 822 Query 982 TTTGTTGATATTGACCCTCTTGATAATCTAGGAAAACCAGGGCCGGATATGAATAGTAAA 1041 |||||||||||||||||||| |||| ||| |||||| |||||||||||||||||| || | Sbjct 823 TTTGTTGATATTGACCCTCTCGATAGTCTTGGAAAATCAGGGCCGGATATGAATAATAGA 882 Query 1042 GGGAAGAGTCATTTAAGACCACCAGGAAACATCAGTGGCTCCCAGTCACCACCAGTAGAA 1101 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 GGCAAAAGTCATTTAAGACCACCAGGAAACATCAGTGGCTCCCAGTCACCACCAGTAGAA 942 Query 1102 AGCCCTGGGAGTTACCATTCTAAGAAAGTTTCATTTGAAGATTTTTTAGAGCCACATAAT 1161 || ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||| Sbjct 943 AGTCCTGGGAGTTACCATTCGAAGAAAGTTTCATTTGATGATGTTTTAGAGCCACAGAAT 1002 Query 1162 ATGAGTACTCCACCACCTACCAATTCAAATGGAAGTTTCGAGTCGTCTGATGATGTGTGG 1221 | ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1003 ACGAGTACTCCGCCACCTACCAATTCAAATGGAAGTTTTGAGTCATCTGATGATGTGTGG 1062 Query 1222 CTTACTGTATCCGAGATCCCCCTCTTTACGCAACCTACGAGTGCTCCGCCACCTACGAGA 1281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 CTTACTGTATCCGAGATCCCCCTCTTTACGCAACCTACGAGTGCTCCGCCACCTACGAGA 1122 Query 1282 CCTCCACCACCAAGACCTACACGTCCTATTAAAAAGAAGGTTAATGAGCCTTCTATACCG 1341 ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| Sbjct 1123 CCTCCACCACCAAGACCTACACGTCCTATAAAAAAGAGGGTTAACGAGCCTTCTATACCG 1182 Query 1342 ACGTCTGCTTACCACTCACACGTTCCTAGCTCAGGAAGAGCTTCTGTAAATAGCCCGACA 1401 || ||| || ||||||||||| |||||||| ||| ||||||||||||||||||||| || Sbjct 1183 ACCTCTACTAACCACTCACACATTCCTAGCACAGCTAGAGCTTCTGTAAATAGCCCGGCA 1242 Query 1402 GCATCTCAAATGGATGAACTCGACGATTTTTCTATTGGCAGAAATCAGACCGCTGCGAAT 1461 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1243 GCATCTCAAATCGATGAACTCGAGGATTTTTCTATTGGCAGAAATCAGACCGCTGCTAAT 1302 Query 1462 GGATATCCTGATCCTTCCTCTGGTGAAGATTCAGATGTTTTTTCTACTGCCGCTGCATCA 1521 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1303 GGATATCCTGATCCTCCCTCTGGTGAAGATTCAGATGTTTTTTCTGCTGCCGCTGCATCA 1362 Query 1522 GCTGCTGCCATGAAGGATGCCATGGATAAAGCAGAAGCAAAGTTTAGGCATGCTAAGGAA 1581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1363 GCTGCTGCCATGAAGGATGCCATGGATAAAGCAGAAGCAAAGTTTAGGCATGCTAAGGAA 1422 Query 1582 AGGAGAGAGAAAGAAAATTTGAAAGCAAGTAGAAGTAGAGAAGGAGATCACACAGAAAAT 1641 ||||||| ||||||||||||||| |||||||||| |||||||| |||||| ||||| ||| Sbjct 1423 AGGAGAGTGAAAGAAAATTTGAAGGCAAGTAGAAATAGAGAAGAAGATCAAACAGAGAAT 1482 Query 1642 TATGATTCTCGTGAAAGGGAACTTAGAGAAAAGCAAGTGAGATTGGACCGTgagagggca 1701 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1483 TATGATTCTCGTGAAAGGGAACTTAGAGAAAATCAAGTGAGATTGGACCGTGAAAGGGCA 1542 Query 1702 gagagggaggcagagatggaaaaagcccaggagagggagaaagaggagagagaaagagag 1761 ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| Sbjct 1543 GAGAGGGAGGCAGAGATGGTAAAAGAGCAGGAGAGGGAGAGAGAGGAGAGAGAAAGAGAG 1602 Query 1762 cagaaaagaattgaaagagaaagggaaagaTTGGTGGCTAGACAGGCGGTAGAGAGGGCT 1821 ||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1603 CAGAAGAGAATTGAGAGAGAAAGGGAAAGACTGTTGGCTAGACAGGCGGTAGAGAGGGCT 1662 Query 1822 ACAAGGGAAGCACGCGAAAGAGCAGCCACGGAAGCTCATGCGAAAGTTCAAAGAGCTGCT 1881 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1663 ACAAGGGAAGCACGCGAAAGAGCAGCCACTGAAGCTCATGCGAAAGTTCAAAGAGCTGCT 1722 Query 1882 GTTGGAAAGGCTACCGATGCCCGAGAGCGCGCCGAAAGAGCAGCAGTTCAAAGAGCGCAT 1941 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1723 GTTGGGAAGGCTACCGATGCCCGAGAGCGCGCCGAAAGAGCAGCGGTTCAAAGAGCCCAT 1782 Query 1942 GCTGAAGCACGTGAAAGGGCAGCTGCAGGGGCAAGAGATAAGGCGGCGAAAGCTGCGGCA 2001 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1783 GCTGAAGCACGTGAAAGGGCAGCTGCAGGGGCAAGAGAAAAGGCTGCGAAAGCTGCGGCA 1842 Query 2002 GAAGCTAGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAAAGAAAGGGCGAATGCTGAA 2061 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1843 GAAGCTAGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAGAGAAAGGGTGAATGCTGAA 1902 Query 2062 GCGCGGGAGAAGGAAACAAGGGTTAGGGCTGAACGAGCTGCTGTGGAAAGGGCAGCTGCT 2121 ||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1903 GCGCGGGAGAAGGAAGCAAGGGTTAGGGCAGAACGAGCTGCTGTGGAAAGAGCAGCTGCT 1962 Query 2122 GAGGCACGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATACCAAT 2181 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1963 GAGGCACGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATAACAAT 2022 Query 2182 GATCTTGACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACC 2241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2023 GATCTTGACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACC 2082 Query 2242 AACCCTCTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAGG 2301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2083 AACCCTCTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGAAGG 2142 Query 2302 GAATCTTTGCGAGTGCCTCCTGGCCA-ACCAGAGAACTTGAGAAAGACCTCTTCAGTAAC 2360 ||||||| |||||||||| |||||| || |||||| ||||||||| ||||||||||||| Sbjct 2143 GAATCTTCGCGAGTGCCTTCTGGCCCTAC-AGAGAATTTGAGAAAGGCCTCTTCAGTAAC 2201 Query 2361 AAACATTGTTGATGATCTCAGTTCAATTTTTGGAG------C--TT-C--AGCTTCCCAA 2409 ||||||||||||||||||||||||||| ||||||| | || | |||| ||||| Sbjct 2202 AAACATTGTTGATGATCTCAGTTCAATATTTGGAGGTAGTGCAATTTCTGAGCTACCCAA 2261 Query 2410 TCTGGTGGGTTTCAAGATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGACTGGAA 2469 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2262 TCTGGTGGGTTTCAAGATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGGCTGGAA 2321 Query 2470 CGCCACCAGAGGACACAGGAGCGGGCT 2496 ||||||||||||||||||||||||||| Sbjct 2322 CGCCACCAGAGGACACAGGAGCGGGCT 2348 Score = 549 bits (297), Expect = 4e-155 Identities = 346/370 (94%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 2500 AAAGCACTTGCTGAGAAAAATGAACGTGATCTTCAAGTACAAAGAGAACAAGTTGAGAAA 2559 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 2395 AAAGCACTTGCTGAGAAAAATGAACGTGATCTACAAGTACAAAGAGAACAAGCTGAGAAA 2454 Query 2560 GATAGGATTGGGGTGACTCTGGATGTTGAGATAAAACGTTGGGGTGCGGGGAAGGAGGGA 2619 ||||||||||| | ||| |||||||||||||||| |||||||||||| |||||||||||| Sbjct 2455 GATAGGATTGGTGAGACCCTGGATGTTGAGATAAGACGTTGGGGTGCAGGGAAGGAGGGA 2514 Query 2620 AACCTGCGAGCTCTGCTTTCGACATTACAATATGTTCTTTGGCCAGAATGTGGTTGGCAA 2679 ||| |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 2515 AACTTGCGTGCTCTGCTTTCGACATTACAATATGTTCTATGGCCAGAATGCGGTTGGCAG 2574 Query 2680 CCTGTTTCATTGACTGATTTAATTA-CGGCTGCGTCTGTCAAGAAAGTTTACAGGAAGGC 2738 |||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||| Sbjct 2575 CCTGTTTCATTGACCGATTTAATTACCGG-AGCATCTGTCAAGAAAGTTTACAGGAAGGC 2633 Query 2739 CACTCTATGTATACACCCTGATAAAGTTCAGCAAAAAGGAGCCAATCTCCAGCAGAAATA 2798 |||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 2634 CACTCTCTGTATACATCCTGACAAAGTTCAGCAAAAAGGGGCCAATCTCCAGCAGAAATA 2693 Query 2799 CATTGCCGAGAAAGTTTTTGACATGCTCAAGGAAGCATGGAACAAGTTTAACTCAGAAGA 2858 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 2694 CATTGCCGAGAAAGTTTTCGACATGCTCAAGGAAGCATGGAACAAGTTCAACTCAGAAGA 2753 Query 2859 ACTCTTCTGA 2868 |||||| ||| Sbjct 2754 ACTCTTTTGA 2763 > Ahg497125 jgi|Araly1|497125|fgenesh2_kg.9__90__AT4G12770.1 Length=3128 Score = 2846 bits (1541), Expect = 0.0 Identities = 1874/2030 (92%), Gaps = 41/2030 (2%) Strand=Plus/Plus Query 6 AAGaaaaaaaGAGAGCTTTTTTAAAAATCAAATGCTTTGATCCGATTCGTTAATGGCGAC 65 ||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 7 AAG-AAAAAAGAGAGCTCTTTT-GAAATCAAATGCTTTGATCTGATTCGTTAATGGCGAC 64 Query 66 TCAGATCTGAAGATAATCTCTTCTTCATTTCTGGTGGGCAAAATCTAAAGCTTTTCGAAT 125 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| | Sbjct 65 TCAGATCTGAAGATAATCTCATCTTCATTTCTGGTGGGC-AAATCTAAAGCTTTTCGATT 123 Query 126 TCGGAGCTAGA-GAATTTAAAGGAATCCAATGGATGATTTCACAGGATTGTTAGCGAGAG 184 |||||| |||| ||| || |||||| |||||||||||||||||||||||||||||||||| Sbjct 124 TCGGAGGTAGAGGAA-TTGAAGGAACCCAATGGATGATTTCACAGGATTGTTAGCGAGAG 182 Query 185 ACTTCGGATTGAAACCTCAGGGAAAATCAGCTCCCATGGCGT-CTCAATCGAACTCTTCT 243 |||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||| Sbjct 183 ACTTCGGATTCAAACCTCAGGGCAAATCAGCTCCCATGGC-TGCTCAATCGAACTCTTCT 241 Query 244 GCCGCTGATTTCAACACTTTCGCTTCTTCTTATAGCTTCGCCACCGCCGCCGGTAAAAAG 303 || |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 242 GCTTCTGATTTCAACAGTTTCGCTTCTTCTTATAGCTTCGCCAACGCCGCCGGTAAAAAG 301 Query 304 TCCGATTCTTTGCCGGTGTTTGACGATCCTGGTCGAGATGGTGATGATCTTCTCTTCAAA 363 || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 302 TCGGAATCTTTGCCGGTGTTTGACGATCTTGGTCGAGATGGTGATGATCTTCTCTTCAAA 361 Query 364 GATGTGTTTAGTGGACCACCACCACCAAAGTACGGATCTTCTTCTGGTGATTCACGTTCT 423 ||||||||||| || ||||||||||||||||||||| |||||||| ||||| |||||| Sbjct 362 GATGTGTTTAGCGG---ACCACCACCAAAGTACGGATCCTCTTCTGGGGATTCTCGTTCT 418 Query 424 CCATCTGCTCCTGCTTTTGACTATGATGCTATGTTCAAGGAACCCAAATCCAAATCAGCG 483 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 419 CCACCTGCTTCTGCTTTTGACTATGATGCTATGTTCAAGGAACCCAAATCCAAACCGGCG 478 Query 484 TCGTCTATGCCGGTTTATGACAAGCCTGTGTATGATGATGAGGATGTGTTTGAGTCTATT 543 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TCGTCCATGCCGGTCTATGACAAGCCTGTGTATGATGATGAGGATGTGTTTGAGTCTATT 538 Query 544 CCTGAGCTCAAAATCCCTTCCACTTCTTCTCAGTCAGCTAGGTTTGA-GAATGTTTTCTC 602 ||||||||||||||||| |||||||||||||| || ||||||||||| | ||| ||| || Sbjct 539 CCTGAGCTCAAAATCCCATCCACTTCTTCTCAATCTGCTAGGTTTGATG-ATG-TTT-TC 595 Query 603 TTCTATCTCATCTTCTCCTACGAAGCACAGGAAACAGAACAGTTCTCCTTTCGATGATCT 662 || | ||| | ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 596 -TC--T-TCA-C--CTCCT---AAGCACAGGAAACAGAACAGTTCTCCTTTTGATGATCT 645 Query 663 CATGGGAAACAATTTGGGGAAGAAAGGGGCAGATAGTGACCGAGAGGAGAAGGGTAGTTC 722 |||||| |||||||||||||||| |||| |||| ||||||||||||||||||| ||| || Sbjct 646 CATGGGCAACAATTTGGGGAAGAGAGGGACAGAGAGTGACCGAGAGGAGAAGGCTAGCTC 705 Query 723 CATTTTTGATGATTTGATTCCTGGGTTTGGTCGCACTAGCTCTCCTCCAT-CTAAGCGGA 781 |||||||||||| |||||||| |||||||||||||||||||||||||| | |||| |||| Sbjct 706 CATTTTTGATGACTTGATTCCCGGGTTTGGTCGCACTAGCTCTCCTCC-TCCTAAACGGA 764 Query 782 CAACTTCAGAGACAACAAATCAATCCGAGAAAGCTCCATATCGAACTGCCGAGACATCTT 841 |||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||| Sbjct 765 CAACTTCAGAGACAACAAATCAATCCCAGAAACCTCCGTATCGGACTGCCGAGACATCTT 824 Query 842 CCAATGTGGAAGAAGACCCGTTTGTAGTCTTGGAGGAGTCTGAATCAACCCCTAGAGAAC 901 ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| Sbjct 825 CCAATGTGGAAGAAGACCCATTTGTAGTCTTGGAGGAGTCTGCATCAAGCCCTAGAGAAC 884 Query 902 CCTCC-C------G-T-ACTGATCCATTGGACGATATTGGTAAATTCAACAGCAGAAAAA 952 | ||| | | | |||||||||||||| |||||||||||||||||||||||||||| Sbjct 885 CTTCCACGGGAGGGTTCACTGATCCATTGGAGGATATTGGTAAATTCAACAGCAGAAAAA 944 Query 953 CTGATCATTCATCTGTCCACGGAGGAGTATTTGTTGATATTGACCCTCTTGATAATCTAG 1012 ||| ||||||||||||||| |||||| |||| ||| | ||| ||||| ||| ||| | Sbjct 945 CTG---ATTCATCTGTCCACGAAGGAGTGTTTGCTGACACTGATCCTCTAAATAGTCTTG 1001 Query 1013 GAAAACCAGGGCCGGATATGAATAGTAAAGGGAAGAGTCA-TTTAAGACCACCAGGAAAC 1071 ||||||||||||| ||||||||||||| ||| |||||| | ||||||||||||||||||| Sbjct 1002 GAAAACCAGGGCCAGATATGAATAGTAGAGGCAAGAGT-ATTTTAAGACCACCAGGAAAC 1060 Query 1072 ATCAGTGGCTCCCAGTCACCACCAGTAGAAAGCCCTGGGAGTTACCATTCTAAGAAAGTT 1131 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1061 ATCAGTGGCTCCCAGTCACCACCAGTAGAAAGTCCTGGGAGTTACCGTTCTAAGAAAGTT 1120 Query 1132 TCATTTGAAGATTTTTTAGAGCCACATAATATGAGTACTCCACCACCTACCAATTCAAAT 1191 |||||||| ||| |||||||||||| |||| |||| |||| |||||||||| ||||||| Sbjct 1121 TCATTTGATGATGTTTTAGAGCCACGGAATACGAGTGCTCCGCCACCTACCAGTTCAAAT 1180 Query 1192 GGAAGTTTCGAGTCGTCTGATGATGTGTGGCTTACTGTATCCGAGATCCCCCTCTTTACG 1251 |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1181 GGAAGTTTTGAGTCATCTGATGATGTTTGGCTTACTGTATCCGAGATCCCCCTCTTTACG 1240 Query 1252 CAACCTACGAGTGCTCCGCCACCTACGAGACCTCCACCACCAAGACCTACACGTCCTATT 1311 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1241 CAACCTACGAGTGCTCCGCCACCTACGAGACCTCCACCACCAAGACCTACACGTCCTATA 1300 Query 1312 AAAAAGAAGGTTAATGAGCCTTCTATACCGACGTCTGCTTACCACTCACACGTTCCTAGC 1371 ||||||| |||||| ||||||||||||||||| ||| || ||||||||||||||| |||| Sbjct 1301 AAAAAGAGGGTTAACGAGCCTTCTATACCGACCTCTACTAACCACTCACACGTTCTTAGC 1360 Query 1372 TCAGGAAGAGCTTCTGTAAATAGCCCGACAGCATCTCAAATGGATGAACTCGACGATTTT 1431 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1361 ACAGCTAGAGCTTCTGTAAATAGCCCGACAGCATCTCAAATGGATGAACTTGACGATTTT 1420 Query 1432 TCTATTGGCAGAAATCAGACCGCTGCGAATGGATATCCTGATCCTTCCTCTGGTGAAGAT 1491 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 1421 TCTATTGGCAGAAATCAGACCGCTGCTAATGGATATCCTGATCCTCCCTCTGGTGAAGAT 1480 Query 1492 TCAGATGTTTTTTCTACTGCCGCTGCATCAGCTGCTGCCATGAAGGATGCCATGGATAAA 1551 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1481 TCAGATATTTTTTCTGCTGCCGCTGCATCAGCTGCTGCCATGAAGGATGCCATGGATAAA 1540 Query 1552 GCAGAAGCAAAGTTTAGGCATGCTAAGGAAAGGAGAGAGAAAGAAAATTTGAAAGCAAGT 1611 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 1541 GCAGAAGCAAAGTTTAGGCATGCTAAGGAAAGGAGAGTGAAAGAAAATTTGAAGGCAAGT 1600 Query 1612 AGAAGTAGAGAAGGAGATCACACAGAAAATTATGATTCTCGTGAAAGGGAACTTAGAGAA 1671 |||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1601 AGAAATAGAGAAGAAGATCAAACAGAGAATTATGATTCTCGTGAAAGGGAACTTAGAGAA 1660 Query 1672 AAGCAAGTGAGATTGGACCGTgagagggcagagagggaggcagagatggaaaaagcccag 1731 || |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| Sbjct 1661 AATCAAGTGAGATTGGACCGTGAAAGGGCAGAGAGGGAGGCAGAGATGGTAAAAGAGCAG 1720 Query 1732 gagagggagaaagaggagagagaaagagagcagaaaagaattgaaagagaaagggaaaga 1791 |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1721 GAGAGGGAGAGAGAGGAGAGAGAAAGAGAGCAGAAGAGAATTGAGAGAGAAAGGGAAAGA 1780 Query 1792 TTGGTGGCTAGACAGGCGGTAGAGAGGGCTACAAGGGAAGCACGCGAAAGAGCAGCCACG 1851 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1781 CTGTTGGCTAGACAGGCGGTAGAGAGGGCTACAAGAGAAGCACGCGAAAGAGCAGCCACT 1840 Query 1852 GAAGCTCATGCGAAAGTTCAAAGAGCTGCTGTTGGAAAGGCTACCGATGCCCGAGAGCGC 1911 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1841 GAAGCTCATGCGAAAGTTCAAAGAGCTGCTGTTGGGAAGGCTACCGATGCCCGAGAACGC 1900 Query 1912 GCCGAAAGAGCAGCAGTTCAAAGAGCGCATGCTGAAGCACGTGAAAGGGCAGCTGCAGGG 1971 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1901 GCCGAAAGAGCAGCGGTTCAAAGAGCCCATGCTGAAGCACGTGAAAGGGCAGCTGCAGGG 1960 Query 1972 GCAAGAGATAAGGCGGCGAAAGCTGCGGCAGAAGCTAGAGAAAAGGCTGA 2021 |||||||| ||||| |||||||||||||||||||||||||||| || ||| Sbjct 1961 GCAAGAGAAAAGGCTGCGAAAGCTGCGGCAGAAGCTAGAGAAAGGG-TGA 2009 Score = 1628 bits (881), Expect = 0.0 Identities = 1111/1212 (92%), Gaps = 55/1212 (5%) Strand=Plus/Plus Query 2008 AGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAAAGAAAGGGCGAATGCTGAAGCGCGG 2067 ||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||| Sbjct 1964 AGAGAAAAGGCTGCGAAAGCTGCGGCAGAAGCTAGAGAAAGGGTGAATGCTGAAGCGCGG 2023 Query 2068 GAGAAGGAAACAAGGGTTAGGGCTGAACGAGCTGCTGTGGAAAGGGCAGCTGCTGAGGCA 2127 ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 2024 GAGAAGGAAGCAAGGGTTAGGGCAGAACGAGCTGCTGTGGAAAGGGCCGCTGCTGAGGCA 2083 Query 2128 CGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATACCAATGATCTT 2187 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2084 CGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATAACAATGATCTT 2143 Query 2188 GACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACCAACCCT 2247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2144 GACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACCAACCCT 2203 Query 2248 CTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAGGGAATCT 2307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2204 CTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAGGGAATCT 2263 Query 2308 TTGCGAGTGCCTCCTGGCC-AACCAGAGAACTTGAGAAAGACCTCTTCAGTAACAAACAT 2366 | |||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||| Sbjct 2264 TCGCGAGTGCCTTCTGGCCCAAC-AGAGAACTTGAGAAAGGCCTCTTCAGTAACAAACAT 2322 Query 2367 TGTTGATGATCTCAGTTCAATTTTTGGAGCTTC-AGCTTCCCAATCTGGTGGGTTTCAAG 2425 ||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||||| Sbjct 2323 TGTTGATGATCTCAGTTCAATATTTGGAG-TTCCAGCTACCCAATCTGGTGGGTTTCAAG 2381 Query 2426 ATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGACTGGAACGCCACCAGAGGACAC 2485 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2382 ATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGGCTGGAACGCCACCAGAGGACAC 2441 Query 2486 AGGAGCGGGCTGCAAAAGCACTTGCTGAGAAAAATGAACGTGATCTTCAAGTACAAAGAG 2545 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2442 AGGAGCGGGCTGCAAAAGCACTTGCTGAGAAAAATGAACGTGATCTACAAGTACAAAGAG 2501 Query 2546 AACAAGTTGAGAAAGATAGGATTGGGGTGACTCTGGATGTTGAGATAAAACGTTGGGGTG 2605 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 2502 AACAAGTTGAGAAAGATAGGATTGGGGTGACTTTGGATGTGGAGATAAAACGTTGGGGTG 2561 Query 2606 CGGGGAAGGAGGGAAACCTGCGAGCTCTGCTTTCGACATTACAATATGTTCTTTGGCCAG 2665 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2562 CAGGGAAGGAGGGAAACCTGCGAGCTCTGCTTTCGACATTACAATATGTTCTTTGGCCAG 2621 Query 2666 AATGTGGTTGGCAACCTGTTTCATTGACTGATTTAATTACGGCTGCGTCTGTCAAGAAAG 2725 ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 2622 AATGTGGTTGGCAGCCTGTTTCATTGACCGATTTAATTACGGCTGCATCTGTCAAGAAAG 2681 Query 2726 TTTACAGGAAGGCCACTCTATGTATACACCCTGATAAAGTTCAGCAAAAAGGAGCCAATC 2785 ||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||| Sbjct 2682 TTTACAGGAAGGCCACTCTCTGTATACACCCTGACAAAGTTCAACAAAAAGGTGCCAATC 2741 Query 2786 TCCAGCAGAAATACATTGCCGAGAAAGTTTTTGACATGCTCAAGGAAGCATGGAACAAGT 2845 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2742 TCCAGCAGAAATACATTGCCGAGAAAGTTTTTGACATGCTCAAGGAAGCATGGAACAAGT 2801 Query 2846 TTAACTCAGAAGAACTCTTCTGAGGAAATCATGGGGCTATGTTTTGAGATGTGTTTTTCG 2905 | ||||||||||||||||||||| ||| ||| | |||| | || | | Sbjct 2802 TCAACTCAGAAGAACTCTTCTGAA-AAA--ATG----T-TGTTC-G---TG-G------G 2842 Query 2906 TGTGCCGCCCAAAAGATGA-TACATTTGGCATTCATTAAATAGCCAAAGATGATGCCCAA 2964 | | ||||| ||||||| | |||||||||||||||||||||||||| ||| ||||||| Sbjct 2843 T---C-GCCCATAAGATGAAT-CATTTGGCATTCATTAAATAGCCAAA-ATGGTGCCCAA 2896 Query 2965 GTTGGAGGCAGATAGTTGTGGATAGAGTATGTATTCCCAGGATTGATTACCCATCACTGC 3024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2897 GTTGGAGGCAGATAGTTGTGGATAGAGTATGTATTCCCAGGATTGATTACCCATCACTGC 2956 Query 3025 ATCATTATAGGCAGGCATCGCAGCAATTGGGCATTCtttttttGTCA--TTATCCTTCTC 3082 |||||||||| | |||||||| |||||||||||| |||||||| | || ||||| || Sbjct 2957 ATCATTATAG--A--CATCGCAGTAATTGGGCATTCATTTTTTGTTAAATTTTCCTTGTC 3012 Query 3083 GAGTCTTGTCCTTAAAGAGTACGATGTCAAAATGTA-GTGATGGTTATTTTTGTATCAAA 3141 | | | ||||| |||| | ||| | || | ||| | ||| | || ||| Sbjct 3013 -A-T-TA-TCCTTCTTGAGT-CTC-GTCCT--T-TAAGAAATG-T-ATT---G-ATGAAA 3057 Query 3142 AACACAATACTTGAGAGCTGTGTATTGTTGTTTCCAAACTATTTATATAT--GCATATAT 3199 | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3058 A-CACAATACTTGAGAGCTGTGTATTGTTGTTTCCAAACTATTTATATATATGCATATAT 3116 Query 3200 GAATATTCTTTT 3211 |||||||||||| Sbjct 3117 GAATATTCTTTT 3128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 121584062040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5