BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12800.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915184 jgi|Araly1|915184|Al_scaffold_0009_153 1037 0.0
> Ahg915184 jgi|Araly1|915184|Al_scaffold_0009_153
Length=660
Score = 1037 bits (561), Expect = 0.0
Identities = 628/661 (95%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 148 ATGGCAGCGAGTGCATCTCCAATGGCGAGCCAGCTAAGGAGCAGCTTCTCCTCCGCTTCT 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCGAGTGCATCTCCAATGGCGAGCCAGCTAAGGAGCAGCTTCTCCTCCGCTTCT 60
Query 208 CTTTCTCAGCGTCTCGCCGTCCCGAAGGGCATCTCCGGTGCTCCTTTCGGTGTTTCTCCG 267
||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTTTCTCGGCGTCTCGCTGTCCCGAAGGGCATCTCCGGCGCTCCTTTCGGTGTTTCTCCG 120
Query 268 ACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGACAACATTCCAA 327
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 121 ACCAAAAGAGTCTCTTCCTTCACCGTCCGAGCTGTTAAATCCGACAAGCCAACATTCCAA 180
Query 328 GTAG-TTCAACCAATCAACGGTGATCCATTCATCGGAAGTTTGGAAACTCCGGTGACATC 386
|| | |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 181 GT-GATTCAACCAATCAACGGCGATCCATTCATCGGAAGCTTGGAAACTCCGGTCACATC 239
Query 387 AAGCCCATTGATCGCGTGGTACCTTTCCAACCTCCCTGGATACCGTACCGCCGTCAACCC 446
|||||| |||||||| ||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 240 AAGCCCCTTGATCGCATGGTACCTTTCTAACCTCCCCGGTTACCGTACTGCCGTCAACCC 299
Query 447 TCTCCTCCGCGGTGTGGAAGTGGGCCTGGCCCATGGTTTCTTCTTAGTGGGCCCATTCGT 506
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTCCTCCGTGGTGTGGAAGTGGGCCTGGCCCATGGTTTCTTCTTAGTGGGCCCATTCGT 359
Query 507 CAAAGCTGGCCCATTAAGGAACACTGCTTACGCCGGGTCAGCCGGGTCTTTAGCCGCGGC 566
||| ||||| || ||||||||||||||||| || ||| ||||||||||||| ||||||||
Sbjct 360 CAAGGCTGGTCCTTTAAGGAACACTGCTTATGCTGGGACAGCCGGGTCTTTGGCCGCGGC 419
Query 567 TGGGCTGGTAGTCATCCTCAGCATGTGCCTCACCATCTACGGTATCTCTTCTTTCAAGGA 626
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 420 TGGGCTAGTAGTCATCCTCAGCATGTGCCTCACCATCTATGGTATCTCTTCATTCAAGGA 479
Query 627 AGGAGAGCCATCGATCGCACCGAGTTTGACTTTGACTGGGCGGAAGAAGCAGCCTGACCA 686
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 AGGAGAGCCGTCGATCGCACCGAGTTTGACTTTGACCGGGCGGAAGAAGCAGCCTGACCA 539
Query 687 GCTTCAAACGGCTGATGGATGGGCTAAGTTCACTGGAGGATTCTTCTTTGGAGGGATCTC 746
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 540 GCTTCAAACGGCTGAAGGATGGGCTAAGTTCACAGGAGGGTTCTTCTTTGGAGGGATCTC 599
Query 747 TGGGGTGACTTGGGCTTACTTCCTTCTCTACGTTCTTGACCTTCCTTACTTCGTCAAGTA 806
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 TGGGGTGACTTGGGCTTACTTCCTTCTCTACGTTCTTGACCTTCCTTACTACGTCAAGTA 659
Query 807 A 807
|
Sbjct 660 A 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5