BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12810.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952586 jgi|Araly1|952586|scaffold_91900002.1 429 2e-119
Ahg927901 jgi|Araly1|927901|scaffold_300358.1 412 2e-114
Ahg915183 jgi|Araly1|915183|Al_scaffold_0009_152 399 2e-110
Ahg925957 jgi|Araly1|925957|scaffold_201518.1 294 8e-79
Ahg927883 jgi|Araly1|927883|scaffold_300340.1 267 2e-70
> Ahg952586 jgi|Araly1|952586|scaffold_91900002.1
Length=1222
Score = 429 bits (232), Expect = 2e-119
Identities = 373/440 (85%), Gaps = 14/440 (3%)
Strand=Plus/Plus
Query 10 AAGAAGCAGAAGAAGGAGATGAGCGATT-C--CGAGAAAAAGACATTCAATGAAGATTCG 66
||||| |||||||||||||||||||||| | ||| |||||||||| | | | |||||
Sbjct 3 AAGAAACAGAAGAAGGAGATGAGCGATTCCAACGAAAAAAAGACATGC-A--ACGATTC- 58
Query 67 AAA-CATTCGATACTTG-CCGTGGACCTGGTAAGATTGATCTTGGAACGCTTGAGCTTTG 124
||| || ||||||||| || ||||| |||| |||||| |||||||||||||||||||||
Sbjct 59 AAAGCAGCCGATACTTGTCC-TGGACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTG 117
Query 125 TTGATTTTCATCGAGCGAGATGCGTTTCTTCAATATGGTATATT-GCTTCCAAAACA-GT 182
|||||||||||||||| ||||| ||||||||| ||||||| | ||||| ||| || |
Sbjct 118 TTGATTTTCATCGAGCTAGATGTGTTTCTTCAGGATGGTAT-TCCGCTTCGAAATCATG- 175
Query 183 CATTGGAGTAACAAATCCAACAACTCCATGGCTCATCCTATTTCCAAAAGGAGATGTGGA 242
|||||||| ||||||||||||| |||||||| ||||||| |||||||| | | ||||| |
Sbjct 176 CATTGGAGGAACAAATCCAACAGCTCCATGGATCATCCTCTTTCCAAACGAACATGTGAA 235
Query 243 AATaaaaaaaGATTCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAG 302
|| || || |||||||||||||||| ||||||| ||| | | | |||| | ||||
Sbjct 236 AACCAACAACGATTCATGTAAGTTGTTTGATCCTCGTGACCATAGTTCATACACAATAAG 295
Query 303 AGACCTCGGGTTTGATTTAGTTACGAGTCGTTGTTTGGCTAGTTCCGGTAGCTGGTTCCT 362
||| |||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||
Sbjct 296 AGATCTCGGGTTTGATATGGTTAGGAGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCT 355
Query 363 TATGTTAGACCATAGAACTGAATTTCATCTTTTGAATCTGTTTACTCGAGTGAGGATTCC 422
|||| ||||||||| |||||| |||||||| |||||||| |||||||||| ||| |||||
Sbjct 356 TATGCTAGACCATAAAACTGATTTTCATCTCTTGAATCTATTTACTCGAGAGAGAATTCC 415
Query 423 TCTTCCGTCTCTAGAATCAA 442
|||||||||||| |||||||
Sbjct 416 TCTTCCGTCTCTGGAATCAA 435
> Ahg927901 jgi|Araly1|927901|scaffold_300358.1
Length=1222
Score = 412 bits (223), Expect = 2e-114
Identities = 370/440 (84%), Gaps = 14/440 (3%)
Strand=Plus/Plus
Query 10 AAGAAGCAGAAGAAGGAGATGAGCGATT-C--CGAGAAAAAGACATTCAATGAAGATTCG 66
||||| |||||||||||||||||||||| | ||| |||||||||| | | | |||||
Sbjct 3 AAGAAACAGAAGAAGGAGATGAGCGATTCCAACGAAAAAAAGACATGC-A--ACGATTC- 58
Query 67 AAA-CATTCGATACTTG-CCGTGGACCTGGTAAGATTGATCTTGGAACGCTTGAGCTTTG 124
||| || ||||||||| || |||| |||| |||||| |||||||||||||||||||||
Sbjct 59 AAAGCAGCCGATACTTGTCC-CGGACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTG 117
Query 125 TTGATTTTCATCGAGCGAGATGCGTTTCTTCAATATGGTATATT-GCTTCCAAAACA-GT 182
|||||||||||||||| ||||| ||||||||| ||||||| | ||||| ||| || |
Sbjct 118 TTGATTTTCATCGAGCTAGATGTGTTTCTTCAGGATGGTAT-TCCGCTTCGAAATCATG- 175
Query 183 CATTGGAGTAACAAATCCAACAACTCCATGGCTCATCCTATTTCCAAAAGGAGATGTGGA 242
|||||||| ||||||||| ||| |||||||| | ||||| |||||||| | | ||||| |
Sbjct 176 CATTGGAGGAACAAATCCGACAGCTCCATGGATTATCCTCTTTCCAAACGAACATGTGAA 235
Query 243 AATaaaaaaaGATTCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAG 302
|| || || ||||| |||||||||| ||||||| ||| | | | |||| | ||||
Sbjct 236 AACCAACAACGATTCGTGTAAGTTGTTTGATCCTCGTGACCATAGTTCATACACAATAAG 295
Query 303 AGACCTCGGGTTTGATTTAGTTACGAGTCGTTGTTTGGCTAGTTCCGGTAGCTGGTTCCT 362
||| |||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||
Sbjct 296 AGATCTCGGGTTTGATATGGTTAGGAGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCT 355
Query 363 TATGTTAGACCATAGAACTGAATTTCATCTTTTGAATCTGTTTACTCGAGTGAGGATTCC 422
|||||||||||||| |||||| |||||||| |||||||| |||||||||| ||| |||||
Sbjct 356 TATGTTAGACCATAAAACTGATTTTCATCTCTTGAATCTATTTACTCGAGAGAGAATTCC 415
Query 423 TCTTCCGTCTCTAGAATCAA 442
|||||||||||| |||||||
Sbjct 416 TCTTCCGTCTCTGGAATCAA 435
> Ahg915183 jgi|Araly1|915183|Al_scaffold_0009_152
Length=942
Score = 399 bits (216), Expect = 2e-110
Identities = 352/415 (85%), Gaps = 20/415 (5%)
Strand=Plus/Plus
Query 739 AAAGTTGTTGTCACTTTGTCTGGAGAAGTTTTGATCATTGTAGCTAAAGTGGAACCATAT 798
||||||| |||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct 544 AAAGTTGCTGTCACTTTGTCTGGAGAGGTTTTGATCATTTTAGCTAGAGTGGAACCATAT 603
Query 799 CCTAGGACGAGATTATGCTTCTTCGCCGTCTACAAGATGGATCCTAAATCATCAAGA-TG 857
|| |||| ||| ||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 604 CCGAGGATGAG---ATGCTTCTTCGACGTCTACAAGATGGATCCTAAATCATCA-GAATG 659
Query 858 GGAAACGATTAAGTCTCTAGCAGGCGAAGCATTGATTTTAGATCTAGGAATAACGGTTGA 917
| ||| |||||||||| | | ||||||||||||| |||||||||||||||||| ||||||
Sbjct 660 GAAAATGATTAAGTCTATTGGAGGCGAAGCATTGCTTTTAGATCTAGGAATAAGGGTTGA 719
Query 918 GGCGAAAGTGATGAAAAATTGCATATATTTTAGTAATGATCAGTTTCATAGATACAATGA 977
||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 720 GGCGAAAGTTATGAAAAATTGCATATATTTTAGTAGTGATCAGTTTCGTAGATACAATGG 779
Query 978 GAATAGTCTATGGAATGTATC-TAACAAGAGCGGTGT-CTTCGTCTACCATTTTCGATCT 1035
|||||||||||| |||| || |||||| | || | | | |||||||||| ||||| |
Sbjct 780 GAATAGTCTATGCAATG-ATTATAACAATAACGATATTCA-CGTCTACCATATTCGAACC 837
Query 1036 GCT-AATGTGGTCCAATTGGTTGAACTTCTTACTGCTTCTTCCAGGACCTCGAAAATACT 1094
| | || || |||||| || ||||| ||||||||| || || | || || ||||
Sbjct 838 GATCAA-GTAGTCCAAGTGTTTGAAGATCTTACTGCGTCC-CC-G-AC---GA---TACT 887
Query 1095 TTTCAAGGATGCTCGTTGtttttttCCCACTTTTACTTCAAAATGGTTGCTTTAA 1149
|||||||||||||||||| ||||| ||||||||| | ||| ||||||||||||
Sbjct 888 TTTCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTGGAAACTGGTTGCTTTAA 942
> Ahg925957 jgi|Araly1|925957|scaffold_201518.1
Length=356
Score = 294 bits (159), Expect = 8e-79
Identities = 250/293 (85%), Gaps = 9/293 (3%)
Strand=Plus/Plus
Query 19 AAGAAGGAGATGAGCGATTCCGAGAAAAAGACATTCAATGAAGATTCGAAA-CATTCGAT 77
||||||||||||| ||||||||| ||||||||| | ||| | | || ||| || | ||
Sbjct 12 AAGAAGGAGATGAATGATTCCGAGGAAAAGACATGCTATG-ACAATCCAAAGCAGCCAAT 70
Query 78 ACTTGCCGTGGACCTGGTAAGATTGATCTTGGAACGCTTGAGCTTTGTTGATTTTCATCG 137
||||| ||||||||| || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 71 ACTTGTCGTGGACCTAGTTAGATTGATCTTAAAACGCTTAAGCTTTGTTGATTTTCATCG 130
Query 138 AGCGAGATGCGTTTCTTCAATATGGTATATTGCTTCCAAAACAGTCATTGGAGTAACAAA 197
|||||||||||||||||||| ||||||||||||||| ||| |||| | |||||||||||
Sbjct 131 AGCGAGATGCGTTTCTTCAACATGGTATATTGCTTCGAAATCAGTAACCGGAGTAACAAA 190
Query 198 TCCAACAACTCCATGGCTCATCCTATTTCCAAA-AGGAGATGTGGAAATa-aa-aa-aa- 252
|||||||||||||||| ||||||| |||||||| | | ||||||||| | || || ||
Sbjct 191 TCCAACAACTCCATGGATCATCCTCTTTCCAAACAA-ACATGTGGAAA-ACAACAACAAT 248
Query 253 GATTCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAGAGA 305
| |||||||||||| | ||||| ||| |||||||||||||||||| | |||||
Sbjct 249 GTTTCATGTAAGTTATTCGATCTTCACGAAAACAAAACCTACATAATCAGAGA 301
> Ahg927883 jgi|Araly1|927883|scaffold_300340.1
Length=1078
Score = 267 bits (144), Expect = 2e-70
Identities = 341/432 (79%), Gaps = 29/432 (7%)
Strand=Plus/Plus
Query 27 GATGAGCGATTCCGAGAAAAAGACATTCAATGAAGATTCGAAA-CATTCGATACTTG-CC 84
||||||||| |||||| ||||||||| ||| || ||||| ||| || ||| ||||| ||
Sbjct 23 GATGAGCGAGTCCGAGGAAAAGACATGCAACGACGATTC-AAAGCAGCCGACACTTGTCC 81
Query 85 GTGGACCTGGTAAGATTGATCTTGGAACGCTTGAGCTTTGT-TGATTTTCATCGAGCGAG 143
| |||||| | | || ||||||| |||||||||| ||| | | |||||||| |||| ||
Sbjct 82 -TAGACCTGATTATATCGATCTTGCAACGCTTGAG-TTTTTCTTATTTTCATAGAGCCAG 139
Query 144 ATGCGTTTCTTCA-ATATGGTA-TATTGCTTCCAAAACAGTCATTGG-AGTA-ACAAAT- 198
|||||||||| || | |||||| || |||| | || | ||| ||| | | | ||
Sbjct 140 ATGCGTTTCTACAGA-ATGGTATTA-CGCTT-C-GAA-A-TCA-TGGCCG-AGCCTGATA 191
Query 199 CCAACAACTCCATGGCTCATCCTATTTCCAAAAGGAGATGTGGAAATa-a-aaa-aa-GA 254
||||||||||||| ||||| | |||||| | | |||| |||| | | ||| || ||
Sbjct 192 GTAACAACTCCATGGATCATCATGTTTCCATACGAAGAT-CCGAAAAACAGAAACAATGA 250
Query 255 -T--TCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAGAGACCTCGG 311
| ||||||||||| | |||||||| ||| || | | |||| | ||||||| |||||
Sbjct 251 TTCATCATGTAAGTTTTTCGATCCTCGTGACAATAGTTCTTACACATTAAGAGATCTCGG 310
Query 312 GTTTGATTTAGTTACGAGTCGTTGTTTGGCTAGTTCCGGTAGCTGGTTCCTTATGTTAGA 371
| || || | | |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 311 GATTAATATGGCTACGAGTCGTTGTTTGACGAGTTCCGGTAGCTGGTTCCTTATGTTAGA 370
Query 372 CCATAGAACT-GAATTTCATCTTTTGAATCTGTTTACTCGAGTGAGGATTCCTCTTCCGT 430
| ||| |||| || ||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 371 CGATA-AACTAGATTTTCACCTTTTGAATCTGTTTACTCGAGAGATGATTCCTCTTCCGC 429
Query 431 CTCTAGAATCAA 442
|||| |||||||
Sbjct 430 CTCTCGAATCAA 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5