BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12820.1
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915183 jgi|Araly1|915183|Al_scaffold_0009_152 475 4e-133
Ahg925957 jgi|Araly1|925957|scaffold_201518.1 213 3e-54
> Ahg915183 jgi|Araly1|915183|Al_scaffold_0009_152
Length=942
Score = 475 bits (257), Expect = 4e-133
Identities = 353/394 (90%), Gaps = 27/394 (7%)
Strand=Plus/Plus
Query 250 TGGAGAAGAAGAATCTAATTATCAATGCCGGTTTCCAAGATTTATGCATCTCTCATGGAA 309
|||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 11 TGGAGAAGAAGAATCTAATTATCAATGCCGGTTTCCAAGATTTATGCA-----C------ 59
Query 310 GCGTCCTTATCTAACTAGGGTTTTTGACTTGGCCGTGATACAGAAGAAACAAAAGAAGGA 369
| | | || | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 60 -C-T-C---TC--A-T--GG-TTTTGACTTGGCCGTGATACAGAAGAAACAAAAGAAGGA 107
Query 370 GATGAGCGATTCCGAGGaaaaaaaaTGCAACGACGATTCAAAGCAGCCTGTACTTGTCTT 429
||||||||||||| | ||| | | ||||||||||||||||||||| || |||||||||||
Sbjct 108 GATGAGCGATTCCAACGAAGAGACATGCAACGACGATTCAAAGCAACCGGTACTTGTCTT 167
Query 430 GGACTTGCTTAGATCGATATTGGAGCGCTTAAGCTTTGTTGATTTTCATCGAGGCAGATG 489
|||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 168 GGACCTGCTTAGATCGATCTTGGAGCGCTTAAGCTTTGTTGATTTTCATCGAGCCAGATG 227
Query 490 CATTTCTTTAGAATGGTATTCAGCTTCGGAATCATGTC-TC-GCAGTAAAAAATCCAACA 547
|||||||| ||||||||||||||||||||||||||| | || | ||||||||||||||||
Sbjct 228 CATTTCTTCAGAATGGTATTCAGCTTCGGAATCATG-CATCAG-AGTAAAAAATCCAACA 285
Query 548 AGTCCATGGATCATCCTCTTTCCAAGCGAAAATGTGGAAAGCAAAAACGATTCATGTAAG 607
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 286 ACTCCATGGATCATCCTCTTTCCAAGCGAACATGTGGAAAACAAAAACGATTCATGTAAG 345
Query 608 TTGTACAATCCTCGTGACCATAGTTCCTACATAG 641
||||||||||||||||||||||||||||||||||
Sbjct 346 TTGTACAATCCTCGTGACCATAGTTCCTACATAG 379
> Ahg925957 jgi|Araly1|925957|scaffold_201518.1
Length=356
Score = 213 bits (115), Expect = 3e-54
Identities = 213/258 (83%), Gaps = 15/258 (6%)
Strand=Plus/Plus
Query 361 AAAGAAGGAGATGAGCGATTCCGAGGaaaaaaaaTGCAACGACGATTCAAAGCAGCCTGT 420
|||||||||||||| |||||||||||||| | |||| | ||| || |||||||||| |
Sbjct 11 AAAGAAGGAGATGAATGATTCCGAGGAAAAGACATGCTATGACAATCCAAAGCAGCCAAT 70
Query 421 ACTTGTCTTGGA-CTTGCTTAGATCGATATTGGAGCGCTTAAGCTTTGTTGATTTTCATC 479
||||||| |||| || | |||||| ||| || | |||||||||||||||||||||||||
Sbjct 71 ACTTGTCGTGGACCTAG-TTAGATTGATCTTAAAACGCTTAAGCTTTGTTGATTTTCATC 129
Query 480 GAG-GCAGATGCATTTCTTTAGA-ATGGTAT-TCAGCTTCGGAATCATGTCTC-GCAGTA 535
||| | |||||| |||||| | | ||||||| | |||||| ||||| || | | ||||
Sbjct 130 GAGCG-AGATGCGTTTCTTCA-ACATGGTATATT-GCTTCGAAATCA-GTAACCGGAGTA 185
Query 536 AAAAATCCAACAAGTCCATGGATCATCCTCTTTCCAAGCGAAA-ATGTGGAAAGCAAAAA 594
| ||||||||||| ||||||||||||||||||||||| | ||| ||||||||| ||| ||
Sbjct 186 ACAAATCCAACAACTCCATGGATCATCCTCTTTCCAAAC-AAACATGTGGAAAACAACAA 244
Query 595 CGAT-T--CATGTAAGTT 609
| || | ||||||||||
Sbjct 245 CAATGTTTCATGTAAGTT 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58125713870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5