BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12830.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359089 jgi|Araly1|359089|fgenesh1_pg.C_scaffold_9000129 1901 0.0
Ahg925760 jgi|Araly1|925760|scaffold_201321.1 385 6e-106
> Ahg359089 jgi|Araly1|359089|fgenesh1_pg.C_scaffold_9000129
Length=1182
Score = 1901 bits (1029), Expect = 0.0
Identities = 1132/1183 (96%), Gaps = 2/1183 (0%)
Strand=Plus/Plus
Query 49 ATGGCGGTTCATATTCACAACCCTAACTTTTTCCACACTCATCATCTCCGAGCATCTCTT 108
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 1 ATGGCGGTTCATATTCACAACCCTAACTTTTTCAACACTCATCGTCTCCGATCATCTCTT 60
Query 109 ACTTCTGCCTCTGCATCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAAGTAT 168
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ACTTCTGCTTCTGCACCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAAATAT 120
Query 169 C-CTAGCTTCCTCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGTTTC 227
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAC-AGCTTCATCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGTTTC 179
Query 228 TGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCGGATCAACCGAGTCCATCAGA 287
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCAGATCAACCGAGTCCATCAGA 239
Query 288 TGAGTGGTTGAAGCAAGGGAAATGGGTTAAAGCTCATAGAGTTGGCGGCTCTGGTGTAGA 347
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TGAGTGGTTGAAGCAAGGGAAATGGGTTAAAGCTCATAGAGTTGGTGGCTCTGGTGTAGA 299
Query 348 AGCAAAAGATCCGATTTTCGGATTAACAATGGGAGCTAGCTCTCAAGCTTCAAAAGATCT 407
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCAAAAGATCCGATTTTCGGGCTAACAATGGGAGCTAGCTCTCAAGCTTCAAAAGATCT 359
Query 408 TTTCCGATGGTTTAGTGTAGAATCCGGGAGTGTAGATAGTCCTCCTGTTATACTCATCCA 467
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTTCGATGGTTTTGTGTAGAATCCGGGAGTGTAGATAGTCCTCCTGTTATACTCATCCA 419
Query 468 TGGATTCCCATCTCAGGCTTATTCTTACCGGAAAACTATTCCCGTTCTTTCAAAGAACTA 527
|||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 420 TGGATTCCCATCCCAGGCTTACTCTTACCGGAAAACTCTTCCCGTTCTTTCAAAGAATTA 479
Query 528 CCGCGCCATTGCTTTCGATTGGCTAGGATTTGGATTTTCTGACAAGCCTCAGGCTGGATA 587
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCGCGCCATTGCTTTTGATTGGCTAGGATTTGGATTTTCTGACAAGCCTCAGGCTGGATA 539
Query 588 TGGATTCAACTATACAATGGACGAGTTTGTTTCTTCGCTGGAGTCATTCATTGACGAAGT 647
|||||| ||||||||||||||||||||||| || ||||| || ||||||||||| |||||
Sbjct 540 TGGATTTAACTATACAATGGACGAGTTTGTATCGTCGCTTGAATCATTCATTGATGAAGT 599
Query 648 AACTACTAGTAAGGTGTCACTTGTGGTGCAGGGCTACTTCTCAGCTGCTGTTGTAAAATA 707
|||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 600 AACTACCAGTAAGGTGTCACTTGTGGTGCAGGGCTACTTCTCAACCGCTGTCGTAAAATA 659
Query 708 TGCAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTCTCACACC 767
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TGCAAGAAACCGACCTGACAAGATCAAGAATCTTATACTCTTGAATCCTCCTCTCACACC 719
Query 768 AGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAACTTTTTGCTTGGGGAAAT 827
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 720 CGAACATGCTAAACTTCCATCAACATTGTCTATATTCAGCAACTTTTTGCTTGGGGAGAT 779
Query 828 TTTCTCTCAGGATCCTCTAAGAGCAAGTGACAAGCCTTTAACAAGCTGTGGTCCTTACAA 887
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 780 TTTCTCTCAGGATCCTCTAAGAGCAAGTGACAAGCCTTTGACAAGCTGCGGTCCTTACAA 839
Query 888 AATGAAAGAAGACGATGCAATGGTTTATCGAAGACCTTATCTTACCTCAGGTTCTTCTGG 947
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 840 AATGAAAGAAGACGATGCAATGGTTTACCGAAGACCTTATCTCACCTCAGGTTCTTCTGG 899
Query 948 TTTTGCACTTAATGCCATAAGCAGGTCCATGAAGAAAGAACTTAAGAAATATGCAGAAGA 1007
|||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 TTTTGCCCTTAACGCCATCAGCAGGTCCATGAAGAAGGAACTTAAGAAATATGCAGAAGA 959
Query 1008 GATGAGGACATCACTAATGGATAAAAACTGGAAAATCCCGATCACCGTGTGCTGGGGACA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATGAGGACATCACTAATGGATAAAAACTGGAAAATCCCGATCACCGTGTGCTGGGGACA 1019
Query 1068 ACGAGATAGGTGGTTAAGCTATGAAGGAGTTGAAGAGTTCTGCAAGAGTTCGGGACACAA 1127
|||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 ACGAGACAGGTGGCTGAGCTATGAGGGAGTTGAAGAGTTCTGCAAGAGTTCGGGACACAA 1079
Query 1128 CCTCGTCGAATTACCAAATGCTGGCCATCATGTACAAGAAGATTGTGGAGAGGAACTTGG 1187
||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCTTGTCGAACTGCCAAATGCAGGCCATCATGTACAAGAAGATTGTGGAGAGGAACTTGG 1139
Query 1188 AGGAATAATCTCAAGAATCATAAGCAAATCTGCTCTATTCTAA 1230
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGGAATAATCTCAAGAATCATAAGCAAATCTGCTCTATTCTAA 1182
> Ahg925760 jgi|Araly1|925760|scaffold_201321.1
Length=329
Score = 385 bits (208), Expect = 6e-106
Identities = 233/245 (95%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 46 AAAATGGCGGTTCATATTCACAACCCTAACTTTTTCCACACTCATCATCTCCGAGCATCT 105
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 21 AAAATGGCGGTTCATATTCACAACCCTAACTTTTTCAACACTCATCATCTCCGATCATCT 80
Query 106 CTTACTTCTGCC-TCTGCATCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAA 164
||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CTTACTTCT-CCTTCTCCTTCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAA 139
Query 165 GTATCCTAGCTTCCTCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGT 224
||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ATATCCAAACTTCATCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGT 199
Query 225 TTCTGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCGGATCAACCGAGTCCATC 284
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 200 TTCTGTTGGAGATGGATTCTCTTTTAGTGAAGGGAAGTATTCGGATCAACCGAGTCCATC 259
Query 285 AGATG 289
| |||
Sbjct 260 AAATG 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5