BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12840.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359088 jgi|Araly1|359088|fgenesh1_pg.C_scaffold_9000128 1581 0.0
> Ahg359088 jgi|Araly1|359088|fgenesh1_pg.C_scaffold_9000128
Length=1209
Score = 1581 bits (856), Expect = 0.0
Identities = 1084/1188 (91%), Gaps = 39/1188 (3%)
Strand=Plus/Plus
Query 31 GGATCATTAAGTATGAATCAAAAACGAAAGGGCTTGTCTCTTCGTCGCTTGTTCTCTTTA 90
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 31 GGATCATTAAGTATGAATCAAAAACGAAAGGGCTCGTCTCTTCGTCGCTTGTTCTCTTTA 90
Query 91 GTGTTTTTTCTTGCAATGATCTTCCTTATAGGGAATGCTTTTATTACAGTAGACTATAAA 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 GTGTTTTTTCTTGCAATGATCTTCCTTATAGGGAATGCTTTTATTACAGTAGACTATAAA 150
Query 151 GAGGGTATCGCGGGATGGAGTTCGATAATTAGACTAAATCTTGCTAAACTAAAGATGTGC 210
||||| || |||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 151 GAGGGCATTGCGGGATGGAGTTCGATAATTAGACTGAATCTTGCAAAACTTAAGATGTGT 210
Query 211 AAGACACAACTTAGGCCTCCTGGTAGCGAGACGTTACCGCGAGGTATTGTTGCAAGTACA 270
|||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||
Sbjct 211 AAGACACAACTTAGGCCTCCTGGTAGTGAGACGTTACCGAGAGGTATTGCTGCAAGTACA 270
Query 271 TCTGACTTGGAAATGCGACCGTTATGGGGAGCAAAGCGCGATAAGAAACCGAAACC-AAG 329
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||
Sbjct 271 TCTGACTTGGAAATGCGACCATTATGGGGCGCAAAGCGCGATAAGAAACCGAAGCCGAA- 329
Query 330 CTTATTAGCTATGGCAGTTGGAATAAGACAAAAGGAAAGTGTCAACAAGATTGTCAAGAA 389
|||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 330 CTTATTGGCTATGGCAGCCGGAATAAAACAGAAGGAAAGTGTCAACAAGATTGTCAAGAA 389
Query 390 GTTTCCATCAAGTGAGTTTGTTGTGATGCTGTTTCACTACGATGGTGCTGTGGATGAATG 449
||||| ||||||||||| ||||||||||||||||| || |||||| | |||||||||||
Sbjct 390 GTTTCGGTCAAGTGAGTTCGTTGTGATGCTGTTTCATTATGATGGTTCCGTGGATGAATG 449
Query 450 GAAGGAGTTTGAGTGGAGTGACACTGCCATTCATATTTCTGTAGTAAACCAAACCAAATG 509
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 450 GAAGGAGTTTGAGTGGAGTGAAACTGCTATTCATATTTCTGTAGTAAACCAAACCAAATG 509
Query 510 GTGGTTTGCAAAGCGTTTTCTACACCCGGATATTGTCTCAGCTTATTCTTACATTTTTCT 569
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 510 GTGGTTTGCAAAGCGTTTTCTACACCCGGATATTGTCTCAGCATATTCATACATATTTCT 569
Query 570 ATGGGATGAAGATCTCGGTGTTGACCATTTTGATGCTAGAAGGTATGTTTCAATTATTAA 629
|||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||
Sbjct 570 TTGGGATGAAGATCTCGGTGTTGACCATTTTGACGCTACAAGATATGTTTCAATAATTAA 629
Query 630 AGAAGAAAAGCTTGAAATATCACAACCTGCTCTTGATCCCAATTTCTCTGAAGTGCATCA 689
||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 630 AGACGAAGGGCTTGAAATATCACAGCCTGCTCTTGATCCTAATTTCTCTGAAGTGCATCA 689
Query 690 TCAACTTACCTCACGAGACAAGAAATCAAGAGTACATAGGAGAACATACAAAGTCATTGG 749
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 690 TCAACTTACCTCACGGGACAAGAAATCAAGAGTACATAGGAGAACACACAAAGTCATTGG 749
Query 750 TCGGGCGAGGTGCAACGAGAATAGCACTGGACCTCCTTGCACAGGATTTGTTGAAATGAT 809
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 750 TCGGGCTAGGTGCAACGAGAATAGCACTGGACCTCCTTGCACAGGATTTGTCGAAATGAT 809
Query 810 GGCTCCTGTGTTTTCCAGAGCAGCTTGGAGGTGTACATGGCATATGATTCAGAATGACTT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GGCTCCTGTGTTTTCCAGAGCAGCTTGGAGGTGTACATGGCATATGATTCAGAATGACTT 869
Query 870 AAACCATGGATGGGGTATAGATTTTCAGCTTGGATATTGTGCACAGGGTGATCGAACCAA 929
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AAACCACGGATGGGGTATAGATTTTCAGCTTGGATATTGTGCACAGGGTGATCGAACCAA 929
Query 930 AAATATCGGTATTGTTGATTCCGAGTATATACTTCATATGGGTCTT-C--C--TA-CA-- 981
||||||||| |||||||||||||||||||||||||||||||||||| | | || |
Sbjct 930 AAATATCGGCATTGTTGATTCCGAGTATATACTTCATATGGGTCTTCCTACATTAGGAGG 989
Query 982 TT-AG--G------AGGAGGT---T-CAG---CT--G-A-AAACAAGACGGATTCAGGGA 1021
|| || | |||| || | || || | | |||| ||||||||||| |||
Sbjct 990 TTCAGCTGAAAACAAGGAAGTAACTATAGTTACTGCGTATAAAC-AGACGGATTCA-GGA 1047
Query 1022 -AGCTCGATAAGACCAAGACTCCGCATGCTGCAGACAAATCATCATCAGTGTCAACTGGT 1080
| ||| |||||||||||||| ||||| | ||| | ||| ||| | | | | |||||
Sbjct 1048 CAACTCAATAAGACCAAGACTAAGCATGATTCAG-C--ATC-CCAT-A-TATTATCTGGT 1101
Query 1081 AGAACTGAGGTTCGGAAGCAAACTTATGTCGAGTTAGAGACTTTTAAACATAGATGGAAA 1140
||| |||||||||||||||| ||||| | ||| |||||||||||||||||||||||||||
Sbjct 1102 AGATCTGAGGTTCGGAAGCAGACTTACGCCGAATTAGAGACTTTTAAACATAGATGGAAA 1161
Query 1141 AATGCTGTGAAGAACGATGAGTGCTGGATAGACCGATTCCAAACATGA 1188
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AATGCAGTGAAGAACGATGAGTGCTGGATAGACCGATTCCAAACATGA 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5