BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12850.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497116 jgi|Araly1|497116|fgenesh2_kg.9__81__AT4G12850.1 767 0.0
> Ahg497116 jgi|Araly1|497116|fgenesh2_kg.9__81__AT4G12850.1
Length=543
Score = 767 bits (415), Expect = 0.0
Identities = 508/552 (92%), Gaps = 9/552 (2%)
Strand=Plus/Plus
Query 94 ATGACCGGAGATCTGAAACTTGATGAACCTTACGTAGGTTTGAAATTCGAATCAGAAGAA 153
||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 1 ATGACCGGAGATCTGAAACTTCATGAACCTTACGTAGGTATGAAATTCGAGTCAGAAGAA 60
Query 154 GAAGCTAAAGATTTCTATGTAGAATACTCCAAAAGATTAGGGTTTGTTGTGCGTATGATG 213
||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 61 GAAGCTAAAGAGTTCTATGTAGAATACTCCAAAATATTAGGGTTCGTTGTACGTATGATG 120
Query 214 CAGAGACGAAGATCAGGTATTGATGGAAGAACACTAGCGAGAAGATTAGGTTGTAACAAG 273
||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 121 CAGAGACGACGATCAGGGATCGATGGAAGAACACTCGCGAGAAGATTAGGTTGTAACAAA 180
Query 274 CAAGGCTTTGGTCCTAATAATCAACGATCATCTAGTTCTAGTTCTAGTTCACGAGAAGGT 333
|| |||||| || || | ||| ||| |||||| | | ||||||||||||| ||||||
Sbjct 181 CATGGCTTTTCTCGTACTGATCCACG---ATCTAG-T-T-GTTCTAGTTCACGTGAAGGT 234
Query 334 TGCAAAGCTACGATTTTGGTGAAAATGGAGAAATCTGGGAAATGGGTTGTTACTAGATTC 393
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 TGCAAAGCTACGATTTTGGTGAAGATGGAGAAATCTGGGAAATGGGTTGTTACTAGATTC 294
Query 394 ATCAAAGAACACAATCACTCTCTTCAATTCATTGGGTCTTCTTCTTATGATTCTTTTGCT 453
||||||||||||||||||| |||| |||||||||||||||||| || |||| ||||||
Sbjct 295 GTCAAAGAACACAATCACTCACTTCTATTCATTGGGTCTTCTTC-TA--ATTCCTTTGCT 351
Query 454 GATAAGGAAAGGAAGATTAAAGAGCTTACGGAGGAGATCGAGTGTCAGGACCGATTATGC 513
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 352 GATAAGGATAGGAAGATTAAAGAGCTTGCAGAGGAGATCGAGTGTCAGGACCGATTATGC 411
Query 514 GATGTGTATCGGGATCGATTGGTGAGTTTTATCGATAATGTTGAACATTATACGGAAGAA 573
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 412 GATGCGTATCGGGATCGATTGGTGAGTTTTATCGATAATTTTGAACATTATACGGAAGAA 471
Query 574 TTGTCACTTAAAGTTCGAGATATTGTGGAGAATGTTAAGAAACTTGAATGTCAAATACAA 633
|||||||||||||| | |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 472 TTGTCACTTAAAGTGAGGGATATTGTAGAGAATATTAAGAAACTTGAATGTCAAATACAA 531
Query 634 ACAAGAGCTTGA 645
||||||||||||
Sbjct 532 ACAAGAGCTTGA 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5