BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G12860.1

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333046 jgi|Araly1|333046|fgenesh1_pm.C_scaffold_9000074           804    0.0  


> Ahg333046 jgi|Araly1|333046|fgenesh1_pm.C_scaffold_9000074
Length=459

 Score =  804 bits (435),  Expect = 0.0
 Identities = 451/459 (98%), Gaps = 0/459 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCGTGGAGAATTGAGTAGAGTGTTCCAAATGTTCGATAAGAATGGAGACGGGAAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATCGTGGAGAATTGAGTAGAGTGTTCCAAATGTTCGATAAGAATGGAGACGGGAAG  60

Query  61   ATTGCGAAAAACGAGCTGAAAGACTTCTTTAAAAGCGTGGGAATCATGGTCCCTGAAAAT  120
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   ATTGCGAAAAACGAGCTGAAAGACTTCTTTAGAAGCGTGGGAATCATGGTCCCTGAAAAT  120

Query  121  GAAATCAATGAGATGATAGCAAAGATGGATGTGAATGGAGACGGGGCCATGGATATCGAT  180
            ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  121  GAAATCAATGAGATGATAGAAAAGATGGATGTGAATGGAGACGGGGTCATGGATATCGAT  180

Query  181  GAGTTTGGATCATTGTATCAAGAAATGGTGGAAGAGAAAGAGGAAGAAGAGGACATGAGA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  181  GAGTTTGGATCATTGTATCAAGAAATGGTGGAAGAGAAAGAGGAAGAAGAGGATATGAGA  240

Query  241  GAAGCCTTTAGAGTATTTGATCAGAATGGTGATGGGTTCATTACAGATGAAGAGCTGAGG  300
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  241  GAAGCCTTTAGAGTATTTGATCAGAATGGTGATGGTTTCATTACAGATGAAGAGCTGAGG  300

Query  301  TCGGTGCTCGCGTCAATGGGGTTGAAGCAAGGGAGAACACTTGAAGATTGCAAGAAGATG  360
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  301  TCGGTGCTTGCGTCAATGGGGTTGAAGCAAGGAAGAACACTTGAAGATTGCAAGAAGATG  360

Query  361  ATAAGTAAGGTTGATGTTGATGGAGATGGTATGGTTAATTTTAAGGAGTTCAAACAAATG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  361  ATAAGTAAGGTTGATGTTGATGGAGATGGTATGGTTAATTTTAAGGAGTTCAAGCAAATG  420

Query  421  ATGAGAGGTGGTGGATTTGCTGCTCTTAGCTCCAATTAA  459
            |||||||||||||||||||||||||||||||||||||||
Sbjct  421  ATGAGAGGTGGTGGATTTGCTGCTCTTAGCTCCAATTAA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16597681215


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5