BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12870.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1 1120 0.0
Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1 283 1e-75
> Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1
Length=768
Score = 1120 bits (606), Expect = 0.0
Identities = 717/771 (93%), Gaps = 6/771 (1%)
Strand=Plus/Plus
Query 25 CTCACTCTTAGTACAAATATTTTCAAGAATGGTTTCTCCTTCTTTTTCAACCAAGCTTGT 84
|||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 1 CTCACTCTTAGTACAAATATTTTCAACAATGGTTTCTTCTTCTTCTTCAACCAAGCTTGT 60
Query 85 CTTCTTTGCTTGCTTTGTTCTGTTCACATTCTCACACAAACTCG-TGACAGGAGAATCCG 143
||||||| |||||||||||||||||||||||||| ||||||||| || | ||||||||||
Sbjct 61 CTTCTTTACTTGCTTTGTTCTGTTCACATTCTCAGACAAACTCGTTG-CTGGAGAATCCG 119
Query 144 ACAAAGTTGAGCTCAATCTTTACTACGAATCACTTTGTCCCGGTTGTCAGAGTTTCATCG 203
|||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 120 ACAAAGTTCAGCTCAATCTTTACTATGAATCACTTTGTCCCGGTTGTCAGAGATTCATCG 179
Query 204 TCGATGAACTAGTCAAAGTCTTTGACTCCGATCTCGATACAATCACCGATGTCAAGCTCG 263
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCGATGAACTAGTCAAAATCTTTGACTCCGATCTCGATACAATCACCGATGTCAAGCTCG 239
Query 264 TTCCATTCGGTTACGCCAAAGTCTCCAATAATCTGACCGTCATTTGCCAGCATGGTGAAG 323
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 TTCCATTCGGTAATGCCAAAGTCTCCAATAATCTGACTGTCATTTGCCAGCATGGTGAAG 299
Query 324 AGGAATGCAAACTCAACGCTCTTGAAGCTTGCGTCATTAACACTTTGCCTAACCCGAAAT 383
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 300 AGGAATGCAAACTAAACGCTCTTGAAGCTTGCGTCATAAACACTTTGCCTAACCAGAAAT 359
Query 384 CGCAGTACAAGTTCATACGATGCGTTGAAAACAATACGGATAACTGGGAATCATCATGTT 443
||||||| |||||||||| |||||||||||| |||| | |||||||||||||||||||
Sbjct 360 TGCAGTACCAGTTCATACGGTGCGTTGAAAACTATACCAAAAACTGGGAATCATCATGTT 419
Query 444 TAAAGGGCTATGGAAATGAGAAAGCCATCAATGATTGTTACAATAGTGATCTCTCTAAGA 503
|||| || |||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 420 TAAATGGATATGGAGATGAGAAAGCCATCAATGATTGTTACAACAGTGATCTCTCTAAAA 479
Query 504 AGCTCATACTTGGATATGCAAAACAAACCTCGAGTCTTAAGCCGAAACATGAATTCGTAC 563
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 480 AGCTCATACTTGGGTATGCAAAACAAACCTCGAGTCTAAAGCCGGAACATGAATTCGTAC 539
Query 564 CATGGGTCACAATCAACAGCAAACCACTCTATACGAAACTAGATGATTTGGTGGGTCAAG 623
||||||||||| |||||||||||||||||||||| || ||||||||| ||||||| ||||
Sbjct 540 CATGGGTCACACTCAACAGCAAACCACTCTATACTAATCTAGATGATCTGGTGGGCCAAG 599
Query 624 TCTGCAAAGCTTACAAAGGAAAGACTCCACTCCCAATAGA-CTGTAGTTCCGCTGCCTTG 682
|||||||||||||||||||||||||||||||||||| | | |||||||||| ||||||||
Sbjct 600 TCTGCAAAGCTTACAAAGGAAAGACTCCACTCCCAAAA-ATCTGTAGTTCCTCTGCCTTG 658
Query 683 TCCGAGAGGAAAATGTCGAATG-TTGAATTCTCCTATGTAGATGAAATTATCAGTCACTA 741
|| ||| ||||||||||||| | |||||||||| ||||| ||||||| ||||| ||||||
Sbjct 659 TCGGAGTGGAAAATGTCGAA-GCTTGAATTCTCGTATGTCGATGAAACTATCAATCACTA 717
Query 742 AGTTAATAATAAAACTACTAAGATGAATAATTAAATAAAGACCTTATCTCT 792
||||||| || |||| ||||||||||||||||||||||||||||||| |||
Sbjct 718 AGTTAATTATCAAACCACTAAGATGAATAATTAAATAAAGACCTTATTTCT 768
> Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1
Length=755
Score = 283 bits (153), Expect = 1e-75
Identities = 262/312 (84%), Gaps = 17/312 (5%)
Strand=Plus/Plus
Query 52 AATGGTTTCTCCTTCTTTTTCAACCAAGCTTGTCTTCTTTGCTTGCT-TTGTTCTG-TTC 109
||||| |||| ||| ||| |||||||||||| || |||||||| | | | ||| ||
Sbjct 29 AATGGCTTCTGATTC--TTT-AACCAAGCTTGTGTTATTTGCTTG-TGTCCTCCTGCTT- 83
Query 110 ACATTCTCACACAAA-CTCGTGACAGGAGAATCCGACAAAGTTG-AGCTCAATCTTTACT 167
||||||||| | ||| || ||| | ||||| |||||||||| || |||||||||||||||
Sbjct 84 ACATTCTCAGA-AAACCTTGTGGCTGGAGATTCCGACAAAG-TGAAGCTCAATCTTTACT 141
Query 168 ACGAATCACTTTGTCCCGGTTGTCA-GAGTTTCATCGTCGATGAACT-AGTCAAAGTCTT 225
| ||||||||||||||||||||||| ||| |||||||||||||| || ||| ||| ||||
Sbjct 142 ATGAATCACTTTGTCCCGGTTGTCAGGAG-TTCATCGTCGATGATCTAAGT-AAAATCTT 199
Query 226 TGACTCCGATCTCGATACAATCAC-CGATGTCAAGCTCGTTCCATTCGGTTACGCCAAAG 284
||||| |||||| | ||||| || | || ||||||| |||||||| ||| | ||||||
Sbjct 200 TGACTATGATCTCTACACAATTACTC-ATCTCAAGCTGGTTCCATTTGGTAATGCCAAAC 258
Query 285 TCTCCAATAATCTGACCGTCATTTGCCAGCATGGTGAAGAGGAATGCAAACTCAACGCTC 344
||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 259 TCTCCGATAATCTGACTATCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCCC 318
Query 345 TTGAAGCTTGCG 356
||||||||||||
Sbjct 319 TTGAAGCTTGCG 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5