BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G12880.1

Length=718
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333044 jgi|Araly1|333044|fgenesh1_pm.C_scaffold_9000072           654    0.0  


> Ahg333044 jgi|Araly1|333044|fgenesh1_pm.C_scaffold_9000072
Length=423

 Score =  654 bits (354),  Expect = 0.0
 Identities = 396/417 (95%), Gaps = 0/417 (0%)
 Strand=Plus/Plus

Query  102  ATGGGGAGATCTATGGTGCTAATCTCGGCGGTTGTACTGGCTTTTCTAGTGGCGGCGCCG  161
            |||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGAGATCTACGGTGCTTATCGCGGCGGTTGTACTGGCTTTTCTAGTGGCGGCGCCG  60

Query  162  ATACCAGAAGTAACAGCCAAGAAATATTTAGTCGGCGACAAAAAGTTCTGGAACCCCAAC  221
            || || ||||||||||| |||||||||  |||||||||||||||||||||||||||||||
Sbjct  61   ATGCCGGAAGTAACAGCTAAGAAATATACAGTCGGCGACAAAAAGTTCTGGAACCCCAAC  120

Query  222  ATTAACTATACCCTATGGGCTCAAGGCAAACATTTCTACGTCGGAGACTGGCTTTATTTT  281
            |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  ATTAACTATACCATATGGGCTCAAGGCAAACATTTCTACGTCGGAGACTGGCTCTATTTT  180

Query  282  GTGTTCTATAGAGACCAACACAACATTCTTGAGGTAAACAAGGCTGATTATGAAAAATGT  341
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct  181  GTGTTCTATAGAGACCAACACAACATTCTTGAGGTAAACAAGGCTGACTATGAAAGATGT  240

Query  342  ATCTCCAACCGCCCAATACGTAATTATACACGTGGAGCTGGGAGAGATATTGTTCCTCTC  401
            |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  241  ATCTCCAACCACCCAATACGCAATTATACACGTGGAGCTGGGAGAGACATTGTTCCTCTC  300

Query  402  TATGAGACTAGACGTTATTATCTACTTGATGGAAGAGGTGGTTGCGTTCAAGGCATGAAG  461
            ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct  301  TATGAGACTAGACGTTACTATCTACTTGATGGAAGAGGTGGTTGCTTTCACGGCATGAAG  360

Query  462  CTAGATGTTTTAGTTGAGActcctcctcctcctcctccttttactcctcctcctccA  518
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  361  CTAGATGTTTTAGTTGAGACTCCTCCTCCTCCTCCTCCTTTCACTCCTCCTCCACCA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26419181481


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5