BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12890.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333043 jgi|Araly1|333043|fgenesh1_pm.C_scaffold_9000071 1005 0.0
Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1 603 9e-172
Ahg497111 jgi|Araly1|497111|fgenesh2_kg.9__76__AT4G12900.1 545 2e-154
Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1 392 2e-108
> Ahg333043 jgi|Araly1|333043|fgenesh1_pm.C_scaffold_9000071
Length=699
Score = 1005 bits (544), Expect = 0.0
Identities = 649/699 (93%), Gaps = 9/699 (1%)
Strand=Plus/Plus
Query 35 ATGGCTTCTTCTTCTGCAACCAAGTTTGTTGATCTGTTCCCATGTCTTTTCTTAGCTTGC 94
||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||
Sbjct 1 ATGGCTTCTTCTTCTTCAACCAAGTTTG-T--TCTGTTCCCATGTCTTTTTTTAGCTTGC 57
Query 95 CTC-TTCGTGTTCACATACTCAAACAACCTCGTCGTGGCTGA-AAATTCCAACAAAGTGA 152
||| ||| ||||||||| ||||||||||||| |||||||||| ||| ||| |||||||||
Sbjct 58 CTCTTTC-TGTTCACATTCTCAAACAACCTCATCGTGGCTGAGAAA-TCCGACAAAGTGA 115
Query 153 AGATCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAAAATTTCATTGTTGATGATC 212
|| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 116 AGCTCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAGAATTTCATCGTCCATGATC 175
Query 213 TAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACCGATCTCAAGCTCGTTCCATTCG 272
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 176 TAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACTGATCTCAAGCTTGTTCCATTCG 235
Query 273 GTAACGCTCATATCTCCAATAATCTGACTATTACTTGCCAGCATGGTGAAGAGGAATGCA 332
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 236 GTAACGCTCATGTCTCCAATAATCTGACTATTACTTGCCAGCATGGTGAGGAGGAATGCA 295
Query 333 AACTTAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAAATTGCAGTACA 392
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 296 AACTAAACGCCCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAAATTGCAATACA 355
Query 393 AGTTCATAC-GCTGCGTTGAAAAAGATACGAATGAATGGGAATCATGTGTTAAAAAATCT 451
||||||||| | ||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 356 AGTTCATACAG-TGCGTTGAAAAGGATACGAATGAGTGGGGATCATGTGTTAAAAAATCT 414
Query 452 GGACGTGAGAAAGCCATCAATGATTGTTACAATGGTGATCTCTCTCAAAAGCTGATACTT 511
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 415 GGACGTGAGAAATCCATCAATGATTGTTACAATGGTGATCTCTCTAAAAAGCTGATATTT 474
Query 512 GGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAATACGTACCATGGGTCACA 571
||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 475 GGGTATGCAAAACAAACCTCGAGTTTGAAGCCTAAACATGAATACGTTCCATGGGTCACA 534
Query 572 CTCAACGGCAAACCACTCTATGACAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCG 631
||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||
Sbjct 535 CTCAACGGCAAACCACTCTATGATAATTACCATAATTTGGTTGCGCAAATCTGCAAAGCG 594
Query 632 TACAAAGGAAAGGATCTCCCAAAACTATGCAGTTCCTCGGTCTTGTATGAGAGGAAAGTG 691
||||||||||||| ||| |||||| ||||||||||||| | | ||| |||||||||||||
Sbjct 595 TACAAAGGAAAGGCTCTACCAAAATTATGCAGTTCCTCTGCCCTGTTTGAGAGGAAAGTG 654
Query 692 TCAAAGTTTCAAGTCTCCTATGTAGATGAAGCTATCAAT 730
|| ||| |||||||||||||||||||||||| |||||||
Sbjct 655 TCGAAGCTTCAAGTCTCCTATGTAGATGAAGTTATCAAT 693
> Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1
Length=768
Score = 603 bits (326), Expect = 9e-172
Identities = 579/695 (83%), Gaps = 41/695 (6%)
Strand=Plus/Plus
Query 77 TGTCTTTTCTTAGCTTGC-CTCTTCGTGTTCACATACTCAAACAACCTCGTCGTGGCT-G 134
|||||| | ||| ||||| | ||| ||||||||| |||| |||| ||||| | ||| |
Sbjct 58 TGTCTTCT-TTA-CTTGCTTTGTTC-TGTTCACATTCTCAGACAAACTCGT--T-GCTGG 111
Query 135 AAAATTCCAACAAAGTGAAGATCAATCTTTACTATGAATCACTTTGTCCCTATTGTCA-A 193
| || ||| ||||||| || ||||||||||||||||||||||||||||| |||||| |
Sbjct 112 AGAA-TCCGACAAAGTTCAGCTCAATCTTTACTATGAATCACTTTGTCCCGGTTGTCAGA 170
Query 194 AATTTCATTGTTGATGATCTAGGT-AAAATCTTTGACTCCGATCTC-CTCAAAATCACCG 251
| ||||| || ||||| ||| || ||||||||||||||||||||| | | ||||||||
Sbjct 171 GA-TTCATCGTCGATGAACTA-GTCAAAATCTTTGACTCCGATCTCGAT-ACAATCACCG 227
Query 252 ATCTCAAGCTCGTTCCATTCGGTAACGCTCATA-TCTCCAATAATCTGACTATTACTTGC 310
|| |||||||||||||||||||||| || || | ||||||||||||||||| | | ||||
Sbjct 228 ATGTCAAGCTCGTTCCATTCGGTAATGC-CAAAGTCTCCAATAATCTGACTGTCATTTGC 286
Query 311 CAGCATGGTGAAGAGGAATGCAAACTTAACGCTCTCGAAGCTTGCGGT-ATAAGA-ACTT 368
|||||||||||||||||||||||||| |||||||| |||||||||| | |||| | ||||
Sbjct 287 CAGCATGGTGAAGAGGAATGCAAACTAAACGCTCTTGAAGCTTGCG-TCATAA-ACACTT 344
Query 369 TGCCCGATCC-GAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAAGATACGAATGAA 427
|||| | || ||||||||||||| |||||||||| ||||||||||| |||| || ||
Sbjct 345 TGCCTAA-CCAGAAATTGCAGTACCAGTTCATACGGTGCGTTGAAAACTATACCAAA-AA 402
Query 428 -TGGGAATCATG-TGTTAAAAA--ATCTGGACG-TGAGAAAGCCATCAATGATTGTTACA 482
|||||||||| |||| ||| || |||| | ||||||||||||||||||||||||||
Sbjct 403 CTGGGAATCATCATGTTTAAATGGATATGGA-GATGAGAAAGCCATCAATGATTGTTACA 461
Query 483 ATGGTGATCTCTCTCAAAAGCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGC 542
| ||||||||||| ||||||| ||||||||||||||||||| ||||||||| | ||||
Sbjct 462 ACAGTGATCTCTCTAAAAAGCTCATACTTGGGTATGCAAAACAAACCTCGAGTCTAAAGC 521
Query 543 CAAAACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC-AAT-TA 600
| ||||||||| |||||||||||||||||||||| |||||||||||||| || ||| ||
Sbjct 522 CGGAACATGAATTCGTACCATGGGTCACACTCAACAGCAAACCACTCTAT-ACTAATCTA 580
Query 601 CCATAATTTGGTCG-CACAAGTCTGCAAAGCGTACAAAGGAAAGGA-TC---TCCCAAAA 655
|| || |||| | | |||||||||||||| |||||||||||| | || ||||||||
Sbjct 581 G-ATGATCTGGTGGGC-CAAGTCTGCAAAGCTTACAAAGGAAAG-ACTCCACTCCCAAAA 637
Query 656 CTATGCAGTTCCTCGGTCTTGTATGAGAGGAAAGTGTCAAAGTTTCAAGTCTCCTATGTA 715
| || |||||||| | ||||| ||| ||||| |||| ||| || || |||| |||||
Sbjct 638 ATCTGTAGTTCCTCTGCCTTGTCGGAGTGGAAAATGTCGAAGCTTGAATTCTCGTATGTC 697
Query 716 GATGAAGCTATCAATTAATAAGTTAATTAACAAAC 750
|||||| |||||||| | ||||||||||| |||||
Sbjct 698 GATGAAACTATCAATCACTAAGTTAATTATCAAAC 732
> Ahg497111 jgi|Araly1|497111|fgenesh2_kg.9__76__AT4G12900.1
Length=693
Score = 545 bits (295), Expect = 2e-154
Identities = 551/673 (82%), Gaps = 24/673 (4%)
Strand=Plus/Plus
Query 82 TTTCTTAGCTTGCCTCTTCGTGTTCACATACTCAAACAACCTCGTCGTGGCT-GAAAATT 140
|||||| ||||||||| || | ||||||| ||| |||| | | |||||||| || || |
Sbjct 33 TTTCTTCGCTTGCCTCCTCCTATTCACATTTTCACACAA-C-C-TCGTGGCTGGACAA-T 88
Query 141 CCAACAAAGTGAAGATCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAAAATTTCA 200
|| ||||||| ||| |||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 89 CCGACAAAGTTAAGCTCAATCTTTACTATGAATCACTTTGTCCTTCTTGTCAGAATTTCA 148
Query 201 TTGTTGATGATCTAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACCGATCTCAAGC 260
| || || ||||||| ||||||||| || ||||||||| || ||||||||||||||| |
Sbjct 149 TCGTCCATCATCTAGGCAAAATCTTTAACACCGATCTCCACACAATCACCGATCTCAAAC 208
Query 261 TCGTTCCATTCGGTAACGCTCATATCTCCAATAATCTGACTATTACTTGCCAGCATGGTG 320
|| |||||||||||||||| ||| | ||| ||||||| || | ||||||||||||||||
Sbjct 209 TCATTCCATTCGGTAACGCCCATGTTTCCGATAATCTTACCGTCACTTGCCAGCATGGTG 268
Query 321 AAGAGGAATGCAAACTTAA-CGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG 379
|||| ||||||||| |||| ||| || |||||||| | |||||||||| |||| ||| |
Sbjct 269 AAGAAGAATGCAAA-TTAAACGCCCTTGAAGCTTGTGCCATAAGAACTTGGCCCAATCAG 327
Query 380 AAATTGCAGTACAAGTTCATACGCTGCGTTGAAAA-AGATACGAATGAATGGGAATCATG 438
| |||||| || ||||||||||| || ||||||| | | ||||||| |||||||||||
Sbjct 328 AGATTGCACTATAAGTTCATACGGTGTGTTGAAACTA-ACACGAATGCTTGGGAATCATG 386
Query 439 TGTTAAAAAATCTGGACGTGAGAAAGCCATCAATGATTGTTACAATGGTGATCTCTCTCA 498
|||||| || | |||| | |||||||| || ||||||||||||||||||||||| ||| |
Sbjct 387 TGTTAAGAAGTATGGAGGCGAGAAAGCGATTAATGATTGTTACAATGGTGATCTTTCT-A 445
Query 499 AA-AGCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAATACG 557
|| |||||||||||||||||||||| | ||| | |||||||| || | ||| ||||||
Sbjct 446 AAGAGCTGATACTTGGGTATGCAAACCAGACATTAAGTTTGAAACCGGAGCATAAATACG 505
Query 558 TACCATGGGTCACACTCAACGGCAAACCACTCTATGACAAT-TACCATAATTTGGTCGCA 616
|||||||| | |||||||||||| |||||||||| || ||| | | |||| || | |
Sbjct 506 TACCATGGATGACACTCAACGGCGAACCACTCTACGAAAATATTGG-TGATTTTGTGG-A 563
Query 617 CA-AGTCTGCAAAGCGTACAAAGGAAAGGAT-CTC-CCAA-AACTATGC-AGTTCCTCGG 671
| |||||||||||| || |||||||||| | ||| || | |||| || | |||||| |
Sbjct 564 CTTAGTCTGCAAAGCTTATAAAGGAAAGGCTGCTCTCCCACAACTCTGTTA-TTCCTCTG 622
Query 672 TCTTGT-ATGAGAGGA-AAGTGTCAAAGTTTCAAGTCTCCTATGTAGATGAAGCTATCAA 729
|||||| | |||||| || ||| ||| || || |||||||||| ||||||||||| ||
Sbjct 623 TCTTGTCAC-AGAGGACAA-TGTTGAAGCTTGAATTCTCCTATGTTGATGAAGCTATAAA 680
Query 730 TTAATAAGTTAAT 742
| | |||||||||
Sbjct 681 TCACTAAGTTAAT 693
> Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1
Length=755
Score = 392 bits (212), Expect = 2e-108
Identities = 550/702 (78%), Gaps = 67/702 (10%)
Strand=Plus/Plus
Query 107 ACATACTCA-AACAACCTCGTCGTGGCTGAAAATTCCAACAAAGTGAAGATCAATCTTTA 165
|||| |||| || ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct 84 ACATTCTCAGAA-AACCT--T-GTGGCTGGAGATTCCGACAAAGTGAAGCTCAATCTTTA 139
Query 166 CTATGAATCACTTTGTCCCTATTGTCAAAATTTCATTGTTGATGATCTAGGTAAAATCTT 225
||||||||||||||||||| |||||| | ||||| || ||||||||| ||||||||||
Sbjct 140 CTATGAATCACTTTGTCCCGGTTGTCAGGAGTTCATCGTCGATGATCTAAGTAAAATCTT 199
Query 226 TGACTCCGATCTCCT-CAAAATCAC-CGATCTCAAGCTCGTTCCATTCGGTAACGCTCAT 283
||||| ||||| || || ||| || | |||||||||| |||||||| ||||| || ||
Sbjct 200 TGACTATGATCT-CTACACAATTACTC-ATCTCAAGCTGGTTCCATTTGGTAATGC-CAA 256
Query 284 A-TCTCCAATAATCTGACTATTACTTGCCAGCATGGTGAAGAGGAATGCAAACTTAACGC 342
| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 257 ACTCTCCGATAATCTGACTATCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGC 316
Query 343 TCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAAATTGCAGTACAAGTTCATACG 402
|| |||||||||| ||||||||| | ||||||||||| || | | || | || ||
Sbjct 317 CCTTGAAGCTTGCGCTATAAGAACATGGCCCGATCCGATTTTT-ATT-CAGGGACA-AC- 372
Query 403 CTGCGTTGAAAAAGATACGAATGAATGGGAATCATGTGTTAAAAAA-TCTGGACGTGAGA 461
|| || | || |||| | | | || | ||| || |||||||||||||
Sbjct 373 -TG-----AAT--GTTA-GAATT--TC--ATTT-TG-GC-AAATAACTCTGGACGTGAGA 416
Query 462 AAGCCATCAATGATTGTTACAATGGTGATCTCTCTCA-AAAG---C-TGATACTTGGGTA 516
|||| |||||||||||||| ||||||||||| | | |||| | |||||||| ||||
Sbjct 417 AAGCTATCAATGATTGTTAAAATGGTGATCTTTAG-AGAAAGGTACCTGATACTTAGGTA 475
Query 517 TGCAAAACTGACC-TCGAGTTTGAAGCCAAAACATGAATACGTACCATGGGTCACACTCA 575
|||| | ||| | ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 476 CGCAACCCAAACCATA-AGTTTGAAGCCGCCACATGAATATGTACCATGGGTCACACTCA 534
Query 576 ACGGCAAACCACTCTATGACAAT-TACCA--TA---AT--T-TGGTCGCACAAGTCTGCA 626
|||||||||||||| |||| || ||| | || || | | | || ||| ||||||
Sbjct 535 ACGGCAAACCACTCGATGATAACGTACAAAGTATGGATGATCTCATGGCTCAAATCTGCA 594
Query 627 AAGCGTACAAAGGAAAG---GATCTCCCAAAACTATGCAGTTC--CT-C---G--GTCTT 675
|||| |||||||||||| | |||||||||| | |||| ||| || | | ||||
Sbjct 595 AAGCATACAAAGGAAAGACTGCTCTCCCAAAAGTTTGCAATTCATCTGCCTTGATGTCTA 654
Query 676 -GT-A--TGAGAGGAAAGTGTCAAAGTTTCAAGTCTCCTATGTAGATGAAGCTATCAATT 731
|| | | |||||||||||| ||| ||||||||| |||| ||| ||||||||||||
Sbjct 655 AGTCACCTAAGAGGAAAGTGTGGAAGCTTCAAGTCT--TATGCCGATAAAGCTATCAATT 712
Query 732 AATAAGTTAATTAACAAACTTCTTATTGAAACTAAGATGGAT 773
| |||||||| || |||||||||||||||| |||||||||||
Sbjct 713 ATTAAGTTAACTATCAAACTTCTTATTGAA-CTAAGATGGAT 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5