BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12900.1
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497111 jgi|Araly1|497111|fgenesh2_kg.9__76__AT4G12900.1 1061 0.0
Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1 610 4e-174
Ahg333043 jgi|Araly1|333043|fgenesh1_pm.C_scaffold_9000071 551 3e-156
Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1 337 8e-92
> Ahg497111 jgi|Araly1|497111|fgenesh2_kg.9__76__AT4G12900.1
Length=693
Score = 1061 bits (574), Expect = 0.0
Identities = 659/698 (94%), Gaps = 13/698 (2%)
Strand=Plus/Plus
Query 10 TCTTCTTCGTTGGCTTCTTCAACC-AAGCTTGTATTCTTTGCTTGCCTCCTCCTATTCAC 68
|||||||| || |||| |||||| || |||| ||||| ||||||||||||||||||||
Sbjct 4 TCTTCTTC-TT--CTTCATCAACCAAATTTTGT-TTCTTCGCTTGCCTCCTCCTATTCAC 59
Query 69 ATTCTCATCACACAATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTA 128
||| | |||||||| |||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 60 ATT-T--TCACACAACCTCGTGGCTGGACAATCCGACAAAGTTAAGCTCAATCTTTACTA 116
Query 129 TGAATCACTTTGTCCTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGAATCACTTTGTCCTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAA 176
Query 189 CACTGATCTCCACACAATCACCGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTC 248
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 177 CACCGATCTCCACACAATCACCGATCTCAAACTCATTCCATTCGGTAACGCCCATGTTTC 236
Query 249 CGATGATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGA 308
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGATAATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGA 296
Query 309 AGCTTGCGCCATAAGAACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGT 368
|||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 297 AGCTTGTGCCATAAGAACTTGGCCCAATCAGAGATTGCACTATAAGTTCATACGGTGTGT 356
Query 369 TGAAACTAACACGAATGCTTGGGAATCTTGTGTTAAGAAGTATGGAGGTGAAAAAGCGAT 428
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 357 TGAAACTAACACGAATGCTTGGGAATCATGTGTTAAGAAGTATGGAGGCGAGAAAGCGAT 416
Query 429 AAATGATTGTTACAATGGTGATCTCTCTAAAGAGCTGATACTTGGGTATGCAAACCAGAC 488
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 TAATGATTGTTACAATGGTGATCTTTCTAAAGAGCTGATACTTGGGTATGCAAACCAGAC 476
Query 489 ATTGAGTTTGAAACCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACT 548
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATTAAGTTTGAAACCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACT 536
Query 549 CTACGAAAATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCGTATAAAGGAAAGGCTGC 608
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 537 CTACGAAAATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCTTATAAAGGAAAGGCTGC 596
Query 609 TCTCCCTA-AACTCTGTTATTCCTCTGTCTTGTCTCAGAGGACAATGATG---CTTGAAT 664
|||||| | ||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 597 TCTCCC-ACAACTCTGTTATTCCTCTGTCTTGTCACAGAGGACAATGTTGAAGCTTGAAT 655
Query 665 TCTCCTATGTTGATGAAGCTATCAATCACTAAGTTAAT 702
|||||||||||||||||||||| |||||||||||||||
Sbjct 656 TCTCCTATGTTGATGAAGCTATAAATCACTAAGTTAAT 693
> Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1
Length=768
Score = 610 bits (330), Expect = 4e-174
Identities = 594/719 (83%), Gaps = 28/719 (4%)
Strand=Plus/Plus
Query 12 TTCTTCGTTGGCTTCTTCAACCAAGCTTGTATTCTTTGCTTGCCTCCTCCTATTCACATT 71
|||||| || ||||||||||||||||||| |||||| ||||| | | || ||||||||
Sbjct 34 TTCTTC-TT--CTTCTTCAACCAAGCTTGTCTTCTTTACTTGCTTTGTTCTGTTCACATT 90
Query 72 CTCATCACACAATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTATGA 131
|||| ||| || ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 91 CTCA-GACA-AA-CTCGTTGCTGGAGAATCCGACAAAGTTCAGCTCAATCTTTACTATGA 147
Query 132 ATCACTTTGTCCTTCTTGTCAGA-ATTTCATCGTCCATCATCTAGGCAAAATCTTTAACA 190
|||||||||||| |||||||| ||| ||||||| || | |||| |||||||||| ||
Sbjct 148 ATCACTTTGTCCCGGTTGTCAGAGATT-CATCGTCGATGAACTAGTCAAAATCTTTGACT 206
Query 191 CTGATCTCCACACAATCACCGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTCCG 250
| |||||| | |||||||||||| |||||||| ||||||||||||| ||| | ||||||
Sbjct 207 CCGATCTCGATACAATCACCGATGTCAAGCTCGTTCCATTCGGTAATGCCAAAGTCTCCA 266
Query 251 ATGATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGAAG 310
|| |||| || |||| |||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 267 ATAATCTGACTGTCATTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCTCTTGAAG 326
Query 311 CTTGCGCCATAAGA-ACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGTT 369
|||||| ||||| | |||| |||||| |||| |||||| ||| ||||||| |||||||||
Sbjct 327 CTTGCGTCATAA-ACACTTTGCCTAACCAGAAATTGCAGTACCAGTTCATACGGTGCGTT 385
Query 370 GAAA-CTA-ACACGAATGCTTGGGAATCTTG-TGTT-AA--GAAGTATGGAGGTGAAAAA 423
|||| ||| || | || || ||||||| | |||| || | | ||||||| ||| |||
Sbjct 386 GAAAACTATAC-CAAAAACT-GGGAATCATCATGTTTAAATGGA-TATGGAGATGAGAAA 442
Query 424 GCGATAAATGATTGTTACAATGGTGATCTCTCTAAAGAGCTGATACTTGGGTATGCAAAC 483
|| || |||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 443 GCCATCAATGATTGTTACAACAGTGATCTCTCTAAAAAGCTCATACTTGGGTATGCAAAA 502
Query 484 CAGACATTGAGTTTGAAA-CCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGA 542
|| || | |||| | ||| ||||| ||| ||| |||||||||| | ||||||||| || |
Sbjct 503 CAAACCTCGAGTCT-AAAGCCGGAACATGAATTCGTACCATGGGTCACACTCAACAGCAA 561
Query 543 ACCACTCTACGAA-AATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCGTATAAAGGAA 601
||||||||| | ||| | | |||| | |||| | |||||||||||| || |||||||
Sbjct 562 ACCACTCTAT-ACTAATCTAGATGATCTGGTGGGCCAAGTCTGCAAAGCTTACAAAGGAA 620
Query 602 AGGCTGCTCTCCCTAAACTCTGTTA-TTCCTCTGTCTTGTCTCAGAGGACAATG---ATG 657
|| || | ||||| ||| ||||| | |||||||| |||||| || ||| |||| | |
Sbjct 621 AGACTCCACTCCCAAAAATCTGT-AGTTCCTCTGCCTTGTCGGAGTGGAAAATGTCGAAG 679
Query 658 CTTGAATTCTCCTATGTTGATGAAGCTATCAATCACTAAGTTAATTATCATACTACTAA 716
||||||||||| ||||| |||||| ||||||||||||||||||||||||| || |||||
Sbjct 680 CTTGAATTCTCGTATGTCGATGAAACTATCAATCACTAAGTTAATTATCAAACCACTAA 738
> Ahg333043 jgi|Araly1|333043|fgenesh1_pm.C_scaffold_9000071
Length=699
Score = 551 bits (298), Expect = 3e-156
Identities = 544/661 (82%), Gaps = 23/661 (3%)
Strand=Plus/Plus
Query 46 TTT-GCTTGCCTCCTCCTATTCACATTCTC-ATCACACAATC-TCGTGGCTGGAG-AATC 101
||| ||||||||| | || ||||||||||| | || || || |||||||| ||| ||||
Sbjct 48 TTTAGCTTGCCTCTTTCTGTTCACATTCTCAAACA-AC-CTCATCGTGGCT-GAGAAATC 104
Query 102 CGACAAAGTAAAGCTCAATCTTTACTATGAATCACTTTGTCCTTCTTGTCAGAATTTCAT 161
||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 105 CGACAAAGTGAAGCTCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAGAATTTCAT 164
Query 162 CGTCCATCATCTAGGCAAAATCTTTAACACTGATCTCCACACAATCACCGATCTCAAGCT 221
||||||| ||||||| ||||||||| || | ||||||| || |||||| |||||||||||
Sbjct 165 CGTCCATGATCTAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACTGATCTCAAGCT 224
Query 222 CATTCCATTCGGTAACGCCCATGTCTCCGATGATCTTACCGTCACTTGCCAGCATGGTGA 281
|||||||||||||||| ||||||||| || |||| || | |||||||||||||||||
Sbjct 225 TGTTCCATTCGGTAACGCTCATGTCTCCAATAATCTGACTATTACTTGCCAGCATGGTGA 284
Query 282 AGAAGAATGCAAATTAAACGCCCTTGAAGCTTGCGCCATAAGAACTTGGCCTAATCAGAG 341
|| ||||||||| |||||||||| |||||||||| |||||||||| ||| ||| ||
Sbjct 285 GGAGGAATGCAAACTAAACGCCCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAA 344
Query 342 ATTGCACTACAAGTTCATTCGGTGCGTTGAAACTAACACGAATGCTTGGGAATCTTGTGT 401
|||||| ||||||||||| | ||||||||||| | ||||||| |||| ||| |||||
Sbjct 345 ATTGCAATACAAGTTCATACAGTGCGTTGAAAAGGATACGAATGAGTGGGGATCATGTGT 404
Query 402 TAAGAAGTATGGAGGTGAAAAAGCGATAAATGATTGTTACAATGGTGATCTCTCTAAAGA 461
||| || | |||| |||| ||| | || |||||||||||||||||||||||||||||| |
Sbjct 405 TAAAAAATCTGGACGTGAGAAATCCATCAATGATTGTTACAATGGTGATCTCTCTAAAAA 464
Query 462 GCTGATACTTGGGTATGCAAACCAGACATTGAGTTTGAAACCGGAGCATAAATACGTACC 521
||||||| ||||||||||||| || || | ||||||||| || | ||| ||||||| ||
Sbjct 465 GCTGATATTTGGGTATGCAAAACAAACCTCGAGTTTGAAGCCTAAACATGAATACGTTCC 524
Query 522 ATGGATGACACTCAACGGCGAACCACTCTACGAAAAT-ATTGGTGATTTTGT-G-GACTT 578
|||| | |||||||||||| |||||||||| || ||| | | |||| || | | |
Sbjct 525 ATGGGTCACACTCAACGGCAAACCACTCTATGATAATTACCA-TAATTTGGTTGCG-CAA 582
Query 579 AGTCTGCAAAGCGTATAAAGGAAAGGCTGCTCTCCCTAAACTCTGTTA-TTCCTCTGTCT 637
| ||||||||||||| |||||||||||| || || ||| | || | |||||||| |
Sbjct 583 A-TCTGCAAAGCGTACAAAGGAAAGGCT-CTA-CCA-AAATTATGC-AGTTCCTCTGCCC 637
Query 638 TGTCTCAGAGGACAA-TG---ATGCTTGAATTCTCCTATGTTGATGAAGCTATCAATCAC 693
||| | |||||| || || | |||| || |||||||||| ||||||| ||||||||||
Sbjct 638 TGTTTGAGAGGA-AAGTGTCGAAGCTTCAAGTCTCCTATGTAGATGAAGTTATCAATCAC 696
Query 694 T 694
|
Sbjct 697 T 697
> Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1
Length=755
Score = 337 bits (182), Expect = 8e-92
Identities = 497/640 (78%), Gaps = 57/640 (9%)
Strand=Plus/Plus
Query 24 TTCTTCAACCAAGCTTGTATTCTTTGCTTGCCTCCTCCT-ATTCACATTCTCATCACACA 82
||||| |||||||||||| || |||||||| ||||||| || ||||||||| | | |
Sbjct 41 TTCTTTAACCAAGCTTGTGTTATTTGCTTGTGTCCTCCTGCTT-ACATTCTCA-GA-A-A 96
Query 83 ATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTATGAATCACTTTGTC 142
| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 97 ACCTTGTGGCTGGAGATTCCGACAAAGTGAAGCTCAATCTTTACTATGAATCACTTTGTC 156
Query 143 CTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAAC-ACTGATCTCCAC 201
| ||||||| | ||||||||| || ||||| | ||||||||| || | ||||||| ||
Sbjct 157 CCGGTTGTCAGGAGTTCATCGTCGATGATCTAAGTAAAATCTTTGACTA-TGATCTCTAC 215
Query 202 ACAATCAC-CGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTCCGATGATCTTAC 260
||||| || | |||||||||| ||||||| ||||| ||| | |||||||| |||| ||
Sbjct 216 ACAATTACTC-ATCTCAAGCTGGTTCCATTTGGTAATGCCAAACTCTCCGATAATCTGAC 274
Query 261 CGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGAAGCTTGCGCCAT 320
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 275 TATCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCCCTTGAAGCTTGCGCTAT 334
Query 321 AAGAACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGTTGAAACTAACAC 380
|||||| ||||| ||| || || | || |||| | | | | | |||
Sbjct 335 AAGAACATGGCCCGATCCGA--TT----T-----TT-ATTCAG-G-G---A--C-AACT- 373
Query 381 GAATGCTTGGGAAT--C-TTGTGTTAAG-AAGTATGGAGGTGAAAAAGCGATAAATGATT 436
||||| || | ||| | || || || || | |||| |||| ||||| || |||||||
Sbjct 374 GAATG-TTAG-AATTTCATTTTGGCAAATAACTCTGGACGTGAGAAAGCTATCAATGATT 431
Query 437 GTTACAATGGTGATCTCTCTA-AA-G--AGCTGATACTTGGGTATGCAAACCAGAC-ATT 491
|||| ||||||||||| | | || | | ||||||||| |||| |||| ||| || ||
Sbjct 432 GTTAAAATGGTGATCTTTAGAGAAAGGTACCTGATACTTAGGTACGCAACCCAAACCATA 491
Query 492 GAGTTTGAAACCGG-AGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACTC- 549
|||||||| ||| | ||| |||| ||||||||| | |||||||||||| ||||||||
Sbjct 492 -AGTTTGAAGCCGCCA-CATGAATATGTACCATGGGTCACACTCAACGGCAAACCACTCG 549
Query 550 -T-A---CG-A-AAA-TATTGG-TGATTTTGTGGACTTAG-TCTGCAAAGCGTATAAAGG 599
| | || | ||| ||| || |||| | ||| || | |||||||||| || |||||
Sbjct 550 ATGATAACGTACAAAGTAT-GGATGATCTCATGG-CTCAAATCTGCAAAGCATACAAAGG 607
Query 600 AAAGGCTGCTCTCCCTAAACTCTGTTATTCCTCTGTCTTG 639
|||| |||||||||| ||| | || |||| |||| ||||
Sbjct 608 AAAGACTGCTCTCCCAAAAGTTTGCAATTCATCTGCCTTG 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26647918983
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5