BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12910.1
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333040 jgi|Araly1|333040|fgenesh1_pm.C_scaffold_9000068 2130 0.0
> Ahg333040 jgi|Araly1|333040|fgenesh1_pm.C_scaffold_9000068
Length=1422
Score = 2130 bits (1153), Expect = 0.0
Identities = 1320/1401 (94%), Gaps = 10/1401 (1%)
Strand=Plus/Plus
Query 297 ATGGTTTGGTTAATGAAAGTTTTTGTCTTTGTGACATTACTCTCTTTAGTGTTTGTAATA 356
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 ATGGTTTGGTTAATGAAAGTTTTTGTCTTTGTGACATTAGTCTCTTTACTGTTTGTAATA 60
Query 357 ACAGAATCAGCTCCTGAATCTGCTCTTATCACCAAACTTCCTGGTTTCGAAGGCACTTTT 416
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 ACAGAATCAGCTCCTGAATCTGCTCTTATTACCAAACTTCCTGGCTTCGAAGGCACTTTT 120
Query 417 CCTTCGAAACATTACTCCGGGTATGTGACAATTGATAAGGAACATGGAAAGAATCTATGG 476
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 121 CCTTCAAAACATTACTCCGGGTATGTGACTATTGATAAGGATCATGGAAAGAATCTGTGG 180
Query 477 TATTACTTTATTGAATCGGAGAAGAATCCATCGAAAGATCCGGTGGTGCTTTGGCTCAAT 536
||||||||| |||||||||||||| ||||||||||||||||||| || || |||||||||
Sbjct 181 TATTACTTTGTTGAATCGGAGAAGGATCCATCGAAAGATCCGGTCGTACTATGGCTCAAT 240
Query 537 GGTGGTCCAGGTTGTTCAAGCATGGATGGATTTGTGTATGAGCATGGTCCATTCAATTTC 596
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GGTGGTCCAGGTTGTTCAAGCATGGATGGATTCGTGTATGAGCATGGTCCATTCAATTTT 300
Query 597 GAACTACCAAAGAAAAACAATAGTCTCCCACTCTTGCATCTTAATCCTTATAGTTGGTCC 656
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 301 GAACTACCAAAGAAAAACAATAGCCTCCCACACTTGCATCTTAATCCTTATAGTTGGTCC 360
Query 657 AAGGTCTCTAACATTATATACCTTGATTCTCCTGTTGGTGTGGGATTCTCTTACTCAAAC 716
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGTATCTAACATTATATATCTTGATTCTCCTGTTGGTGTGGGATTCTCTTACTCAAAC 420
Query 717 AATAAGTCTGATTACATAACCGGTGATATTAAAACCGCGGTTGACTCTCACGCGTTCCTT 776
|| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 AACATTTCTGATTACATAACCGGTGATACTAAAACCGCGGTTGACTCTCACGCGTTCCTT 480
Query 777 CTCAAGTGGTTCCAAATGTTTCCTGAGTTTCAATCAAATCCTTTTTTCATCTCTGGAGAA 836
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 CTCAAGTGGTTCCAAATGTTTCCTGAGTTTCAATCAAATCCATTTTTCATCTCTGGAGAA 540
Query 837 TCTTACGCCGGAGTTTATGTCCCAACTCTTGCTTCAGAAGTTGTCATAGGGAACAAAAAT 896
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 541 TCTTACGCCGGAGTTTATGTCCCAACTCTTGCTTCAGAAGTTGTCAAAGGGATCAAGAAT 600
Query 897 GGAGTAAAGCCGGCTCTTAACTTCAAGGGGTATTTGGTTGGAAATGGAGTTGCGGATCCG 956
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 601 GGGGTAAAGCCGGCTCTTAACTTCAAGGGATATTTGGTTGGAAATGGAGTTGCGGATC-- 658
Query 957 AAGT-TT-GATGGAAATGCTTTTGTCCCGTTTGCACATGGGATGGGACTAATCTCTGATG 1014
|||| || |||||||||||| | ||||||||||| || |||||||||||||| |||||||
Sbjct 659 AAGTATTTGATGGAAATGCTCTCGTCCCGTTTGCTCACGGGATGGGACTAATATCTGATG 718
Query 1015 AACTCTTTGAGAACGTTACAAAAGCTTGCAAGGGAAATTTCTATGAAATAGAGGGACTCG 1074
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 719 AACTCTTTGAGAACGTTACAAAAGCTTGCCATGGAAATTTCTATGAAATAGAGGGACTTG 778
Query 1075 AGTGCGAGGAACAGTATACGAAAGTTAAC-GATGATACT-AACCAG-TTGAATATATACA 1131
|||||||||||||||||||||||||| | ||||||||| || || ||||| |||||||
Sbjct 779 AGTGCGAGGAACAGTATACGAAAGTTT-CTGATGATACTGAA--AGGTTGAACATATACA 835
Query 1132 ACATTCTTGAGCCATGTTACCACGGAACATCGCTATCTGCATTCGACATTAGATCGCTTC 1191
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 836 ACATTCTTGAGCCATGTTACCACGGAACATCGCTATCTGCTTTCGACATTAGATCACTAC 895
Query 1192 CTTCAAGTCTCCTTCAGCTAGGCAAAACTGAAAAACGGTTACCTATAAGAAAAAGAATGT 1251
|||||||||||||||||||||| ||||| ||| || |||| ||||||||||||||||||
Sbjct 896 CTTCAAGTCTCCTTCAGCTAGGTAAAACCGAACGACCGTTAGCTATAAGAAAAAGAATGT 955
Query 1252 TTGGTCGAGCGTGGCCAGTTCGTGCGCCTGTTCATCCAGGCATTGTCCCTAGCTGGTCTC 1311
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 956 TTGGTCGAGCATGGCCAGTTCGTGCGCCTGTTCGTCCAGGCATTGTTCCTAGCTGGTCTC 1015
Query 1312 AACTTCTTGCCGACGTCACTGTTCCTTGCATTGATGATAGAGTTGCAACAGCGTGGTTGA 1371
|||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1016 AACTCCTTGCTGACGTCTCTGTTCCTTGTATTGATGATAGAGTTGCAACAGCGTGGCTGA 1075
Query 1372 ACGATCCAGAGATTAGGAAAGCTATTCATACTAAAGAGGAGAGCGAGATTGGAAGGTGGG 1431
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1076 ACGATCCAGCGATTAGGAAAGCTATTCATACTAAAGAGGAGAGTGAGATTGGAAGGTGGG 1135
Query 1432 AACTTTGCAGTGGGAAACTCTCATTCTATCACGACGCAGGAAGCATGATCGATTTCCATA 1491
|||| ||||||||||||||||||||| ||||||| ||||||||||||||| | |||||||
Sbjct 1136 AACTCTGCAGTGGGAAACTCTCATTCGATCACGATGCAGGAAGCATGATCAAATTCCATA 1195
Query 1492 GAAACCTTACACTAAGTGGATATAGAGCTCTCATTTACAGCGGGGATCACGATATGTGTG 1551
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1196 GAAACCTTACTCTAAGTGGATATAGAGCTCTTATTTACAGCGGGGATCACGATATGTGTG 1255
Query 1552 TTCCGTTTACTGGCTCGGAAGCTTGGACAAAATCTCTTGGATACAAAGTTATTGATGAAT 1611
|||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1256 TTCCATATACTGGCTCTGAAGCTTGGACAAAATCTCTTGGATACAAAGTGATTGATGAAT 1315
Query 1612 GGAGGGCATGGATATCAAATGACCAAGTCGCGGGGTATACGCAAGGATATGCAAACAATC 1671
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1316 GGAGGGCATGGATATCAAACGACCAAGTCGCAGGGTATACGCAAGGATATGCAAACAATC 1375
Query 1672 TCACATTTTTAACCATCAAGG 1692
|||||||||||||||||||||
Sbjct 1376 TCACATTTTTAACCATCAAGG 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72066743540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5