BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12910.1 Length=1918 Score E Sequences producing significant alignments: (Bits) Value Ahg333040 jgi|Araly1|333040|fgenesh1_pm.C_scaffold_9000068 2130 0.0 > Ahg333040 jgi|Araly1|333040|fgenesh1_pm.C_scaffold_9000068 Length=1422 Score = 2130 bits (1153), Expect = 0.0 Identities = 1320/1401 (94%), Gaps = 10/1401 (1%) Strand=Plus/Plus Query 297 ATGGTTTGGTTAATGAAAGTTTTTGTCTTTGTGACATTACTCTCTTTAGTGTTTGTAATA 356 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1 ATGGTTTGGTTAATGAAAGTTTTTGTCTTTGTGACATTAGTCTCTTTACTGTTTGTAATA 60 Query 357 ACAGAATCAGCTCCTGAATCTGCTCTTATCACCAAACTTCCTGGTTTCGAAGGCACTTTT 416 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 61 ACAGAATCAGCTCCTGAATCTGCTCTTATTACCAAACTTCCTGGCTTCGAAGGCACTTTT 120 Query 417 CCTTCGAAACATTACTCCGGGTATGTGACAATTGATAAGGAACATGGAAAGAATCTATGG 476 ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 121 CCTTCAAAACATTACTCCGGGTATGTGACTATTGATAAGGATCATGGAAAGAATCTGTGG 180 Query 477 TATTACTTTATTGAATCGGAGAAGAATCCATCGAAAGATCCGGTGGTGCTTTGGCTCAAT 536 ||||||||| |||||||||||||| ||||||||||||||||||| || || ||||||||| Sbjct 181 TATTACTTTGTTGAATCGGAGAAGGATCCATCGAAAGATCCGGTCGTACTATGGCTCAAT 240 Query 537 GGTGGTCCAGGTTGTTCAAGCATGGATGGATTTGTGTATGAGCATGGTCCATTCAATTTC 596 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 GGTGGTCCAGGTTGTTCAAGCATGGATGGATTCGTGTATGAGCATGGTCCATTCAATTTT 300 Query 597 GAACTACCAAAGAAAAACAATAGTCTCCCACTCTTGCATCTTAATCCTTATAGTTGGTCC 656 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 301 GAACTACCAAAGAAAAACAATAGCCTCCCACACTTGCATCTTAATCCTTATAGTTGGTCC 360 Query 657 AAGGTCTCTAACATTATATACCTTGATTCTCCTGTTGGTGTGGGATTCTCTTACTCAAAC 716 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAGGTATCTAACATTATATATCTTGATTCTCCTGTTGGTGTGGGATTCTCTTACTCAAAC 420 Query 717 AATAAGTCTGATTACATAACCGGTGATATTAAAACCGCGGTTGACTCTCACGCGTTCCTT 776 || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 421 AACATTTCTGATTACATAACCGGTGATACTAAAACCGCGGTTGACTCTCACGCGTTCCTT 480 Query 777 CTCAAGTGGTTCCAAATGTTTCCTGAGTTTCAATCAAATCCTTTTTTCATCTCTGGAGAA 836 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 481 CTCAAGTGGTTCCAAATGTTTCCTGAGTTTCAATCAAATCCATTTTTCATCTCTGGAGAA 540 Query 837 TCTTACGCCGGAGTTTATGTCCCAACTCTTGCTTCAGAAGTTGTCATAGGGAACAAAAAT 896 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| Sbjct 541 TCTTACGCCGGAGTTTATGTCCCAACTCTTGCTTCAGAAGTTGTCAAAGGGATCAAGAAT 600 Query 897 GGAGTAAAGCCGGCTCTTAACTTCAAGGGGTATTTGGTTGGAAATGGAGTTGCGGATCCG 956 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 601 GGGGTAAAGCCGGCTCTTAACTTCAAGGGATATTTGGTTGGAAATGGAGTTGCGGATC-- 658 Query 957 AAGT-TT-GATGGAAATGCTTTTGTCCCGTTTGCACATGGGATGGGACTAATCTCTGATG 1014 |||| || |||||||||||| | ||||||||||| || |||||||||||||| ||||||| Sbjct 659 AAGTATTTGATGGAAATGCTCTCGTCCCGTTTGCTCACGGGATGGGACTAATATCTGATG 718 Query 1015 AACTCTTTGAGAACGTTACAAAAGCTTGCAAGGGAAATTTCTATGAAATAGAGGGACTCG 1074 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | Sbjct 719 AACTCTTTGAGAACGTTACAAAAGCTTGCCATGGAAATTTCTATGAAATAGAGGGACTTG 778 Query 1075 AGTGCGAGGAACAGTATACGAAAGTTAAC-GATGATACT-AACCAG-TTGAATATATACA 1131 |||||||||||||||||||||||||| | ||||||||| || || ||||| ||||||| Sbjct 779 AGTGCGAGGAACAGTATACGAAAGTTT-CTGATGATACTGAA--AGGTTGAACATATACA 835 Query 1132 ACATTCTTGAGCCATGTTACCACGGAACATCGCTATCTGCATTCGACATTAGATCGCTTC 1191 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | Sbjct 836 ACATTCTTGAGCCATGTTACCACGGAACATCGCTATCTGCTTTCGACATTAGATCACTAC 895 Query 1192 CTTCAAGTCTCCTTCAGCTAGGCAAAACTGAAAAACGGTTACCTATAAGAAAAAGAATGT 1251 |||||||||||||||||||||| ||||| ||| || |||| |||||||||||||||||| Sbjct 896 CTTCAAGTCTCCTTCAGCTAGGTAAAACCGAACGACCGTTAGCTATAAGAAAAAGAATGT 955 Query 1252 TTGGTCGAGCGTGGCCAGTTCGTGCGCCTGTTCATCCAGGCATTGTCCCTAGCTGGTCTC 1311 |||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 956 TTGGTCGAGCATGGCCAGTTCGTGCGCCTGTTCGTCCAGGCATTGTTCCTAGCTGGTCTC 1015 Query 1312 AACTTCTTGCCGACGTCACTGTTCCTTGCATTGATGATAGAGTTGCAACAGCGTGGTTGA 1371 |||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1016 AACTCCTTGCTGACGTCTCTGTTCCTTGTATTGATGATAGAGTTGCAACAGCGTGGCTGA 1075 Query 1372 ACGATCCAGAGATTAGGAAAGCTATTCATACTAAAGAGGAGAGCGAGATTGGAAGGTGGG 1431 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1076 ACGATCCAGCGATTAGGAAAGCTATTCATACTAAAGAGGAGAGTGAGATTGGAAGGTGGG 1135 Query 1432 AACTTTGCAGTGGGAAACTCTCATTCTATCACGACGCAGGAAGCATGATCGATTTCCATA 1491 |||| ||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||| Sbjct 1136 AACTCTGCAGTGGGAAACTCTCATTCGATCACGATGCAGGAAGCATGATCAAATTCCATA 1195 Query 1492 GAAACCTTACACTAAGTGGATATAGAGCTCTCATTTACAGCGGGGATCACGATATGTGTG 1551 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1196 GAAACCTTACTCTAAGTGGATATAGAGCTCTTATTTACAGCGGGGATCACGATATGTGTG 1255 Query 1552 TTCCGTTTACTGGCTCGGAAGCTTGGACAAAATCTCTTGGATACAAAGTTATTGATGAAT 1611 |||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1256 TTCCATATACTGGCTCTGAAGCTTGGACAAAATCTCTTGGATACAAAGTGATTGATGAAT 1315 Query 1612 GGAGGGCATGGATATCAAATGACCAAGTCGCGGGGTATACGCAAGGATATGCAAACAATC 1671 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1316 GGAGGGCATGGATATCAAACGACCAAGTCGCAGGGTATACGCAAGGATATGCAAACAATC 1375 Query 1672 TCACATTTTTAACCATCAAGG 1692 ||||||||||||||||||||| Sbjct 1376 TCACATTTTTAACCATCAAGG 1396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72066743540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5