BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12960.2
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1 494 6e-139
Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1 340 9e-93
Ahg497111 jgi|Araly1|497111|fgenesh2_kg.9__76__AT4G12900.1 169 4e-41
> Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1
Length=755
Score = 494 bits (267), Expect = 6e-139
Identities = 324/352 (92%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 1 AGCACTCAACTTAAACTCTTTTAGTAACAATGGTTTCTTCTTCTTTAACCAAGCTTGTGT 60
||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1 AGCACTCAACTCAAACTCTTTTAGTAACAATGGCTTCTGATTCTTTAACCAAGCTTGTGT 60
Query 61 TCTTTGGTTGTCTCCTCCTGCTCACATTCACGGACAACCTTGTGGCTGGAAAATCTGGCA 120
| |||| |||| |||||||||| |||||| | || ||||||||||||||| | || | ||
Sbjct 61 TATTTGCTTGTGTCCTCCTGCTTACATTCTCAGAAAACCTTGTGGCTGGAGATTCCGACA 120
Query 121 AAGTGAAGCTCAATCTTTACTACGAATCACTTTGTCCCGGTTGTCAGGAATTCATCGTCG 180
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 121 AAGTGAAGCTCAATCTTTACTATGAATCACTTTGTCCCGGTTGTCAGGAGTTCATCGTCG 180
Query 181 ATGACCTAGGTAAAATCTTTGACTACGATCTCTACACAATCACTGATCTCAAGCTGTTTC 240
|||| ||| |||||||||||||||| |||||||||||||| ||| ||||||||||| |||
Sbjct 181 ATGATCTAAGTAAAATCTTTGACTATGATCTCTACACAATTACTCATCTCAAGCTGGTTC 240
Query 241 CATTTGGTAATGCCGAACTCTCCGATAATCTGACTGTCACTTGCCAGCATGGTGAAGAGG 300
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CATTTGGTAATGCCAAACTCTCCGATAATCTGACTATCACTTGCCAGCATGGTGAAGAGG 300
Query 301 AATGCAAACTAAACGCCCTTGAAGCTTGCGC-ATTAAGAACTTGGCCCGATC 351
||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 301 AATGCAAACTAAACGCCCTTGAAGCTTGCGCTAT-AAGAACATGGCCCGATC 351
> Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1
Length=768
Score = 340 bits (184), Expect = 9e-93
Identities = 283/329 (86%), Gaps = 13/329 (4%)
Strand=Plus/Plus
Query 26 AACAATGGTTTCTTCTTC-T-TT-AACCAAGCTTGTGTTCTTTGGTTGTC-TCCTCCTGC 81
|||||||||||||||||| | || |||||||||||| |||||| ||| | | | |||
Sbjct 25 AACAATGGTTTCTTCTTCTTCTTCAACCAAGCTTGTCTTCTTTACTTG-CTTTGTTCTGT 83
Query 82 TCACATTCACGGACAACCTTGTGGCTGGAAAATCTGGCAAAGTGAAGCTCAATCTTTACT 141
|||||||| | ||||| || || |||||| |||| | |||||| |||||||||||||||
Sbjct 84 TCACATTCTCAGACAAACTCGTTGCTGGAGAATCCGACAAAGTTCAGCTCAATCTTTACT 143
Query 142 ACGAATCACTTTGTCCCGGTTGTCAGGA-ATTCATCGTCGATGACCTAGGT-AAAATCTT 199
| ||||||||||||||||||||||| || ||||||||||||||| ||| || ||||||||
Sbjct 144 ATGAATCACTTTGTCCCGGTTGTCA-GAGATTCATCGTCGATGAACTA-GTCAAAATCTT 201
Query 200 TGACTACGATCTCTACACAATCACTGATCTCAAGCT-GTTTCCATTTGGTAATGCCGAAC 258
||||| ||||||| | |||||||| ||| ||||||| | ||||||| ||||||||| ||
Sbjct 202 TGACTCCGATCTCGATACAATCACCGATGTCAAGCTCG-TTCCATTCGGTAATGCCAAAG 260
Query 259 TCTCCGATAATCTGACTGTCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCCC 318
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 261 TCTCCAATAATCTGACTGTCATTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCTC 320
Query 319 TTGAAGCTTGCG-CATTAAGAACTTGGCC 346
|||||||||||| ||| || | ||| |||
Sbjct 321 TTGAAGCTTGCGTCATAAACA-CTTTGCC 348
> Ahg497111 jgi|Araly1|497111|fgenesh2_kg.9__76__AT4G12900.1
Length=693
Score = 169 bits (91), Expect = 4e-41
Identities = 168/203 (83%), Gaps = 14/203 (7%)
Strand=Plus/Plus
Query 398 GTTCATACGGTGCGTCGAAAGC-GATACGAAAGGC-TGGGAATCATGTGTTAAAAACTCT 455
|||||||||||| || |||| | | ||| || || ||||||||||||||||| || | |
Sbjct 342 GTTCATACGGTGTGTTGAAA-CTAACACG-AATGCTTGGGAATCATGTGTTAAGAAGTAT 399
Query 456 GGACGTGAGAAAGCAATCAATGATTGTTACAATGGTGATCTTTCTAGAA-AGCTGATACT 514
||| | |||||||| || |||||||||||||||||||||||||||| || ||||||||||
Sbjct 400 GGAGGCGAGAAAGCGATTAATGATTGTTACAATGGTGATCTTTCTA-AAGAGCTGATACT 458
Query 515 TGGGTACGCAA-CCAAA-ACCAAGAATTTGAAGCCGCCA-CATGAATACGTACCATGGGT 571
|||||| |||| ||| | | ||| |||||| ||| | ||| |||||||||||||| |
Sbjct 459 TGGGTATGCAAACCAGACATTAAG--TTTGAAACCGG-AGCATAAATACGTACCATGGAT 515
Query 572 CACACTCAACGGC-AAGCCACTC 593
|||||||||||| || ||||||
Sbjct 516 GACACTCAACGGCGAA-CCACTC 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5