BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G12970.1

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497108 jgi|Araly1|497108|fgenesh2_kg.9__73__AT4G12970.1           573    4e-163


> Ahg497108 jgi|Araly1|497108|fgenesh2_kg.9__73__AT4G12970.1
Length=420

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 387/423 (91%), Gaps = 10/423 (2%)
 Strand=Plus/Plus

Query  31   aagaagaagaagaagtagagaatgaagcatgaaatgatgaaCATCAAGCCAAGATGCATA  90
            |||||||||||||||||||| ||||||||||||||||||||  |||||||||||||| ||
Sbjct  1    AAGAAGAAGAAGAAGTAGAGGATGAAGCATGAAATGATGAATTTCAAGCCAAGATGCGTA  60

Query  91   ACCATCTTCTTTCTTCTTTTTGCTTTGCTTCTTGGAAATTATGTAGTTCAAGCCTCAAGA  150
            ||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct  61   ACCATCTTCTTCCTTCTCTTTGCTTTGGTTCTTGGAGATTATGTAGTTCAAGCCTCAAGA  120

Query  151  CCTCGTTCTATCGAAAATACGGTCTCCCTTCTCCCACAAGTACATCTCCTGAATTCAAGG  210
            |||| | ||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct  121  CCTCATCCTATCGAAAATACGGTCTCACTTCACTCACAAGTACATCTCCTGAATTCAAGG  180

Query  211  AGGAGGCATATGATAGGGTCGACAGCACCAACTTGTACGTACAACGAGTGCAGAGGATGC  270
            || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  181  AGAAGGCATATGATAGGTTCGACGGCACCAACTTGTACGTACAACGAGTGCAGAGGATGC  240

Query  271  AGATACAAGTGCAGAGCAGAGCAAGTTCCAGTCGAAGGAAATGACCCTATCAACAGTGCT  330
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AGATACAAATGCAGAGCAGAGCAAGTTCCAGTCGAAGGAAATGACCCTATCAACAGTGCT  300

Query  331  TATCATTATAGATGTGTTTGTCATAGATAATAGTTGTTAAATCTCTTCTCTTTTTGCCCT  390
            |||||||||||||||||||||||||||||||| |  | ||||||||||| |||| |||||
Sbjct  301  TATCATTATAGATGTGTTTGTCATAGATAATAATAAT-AAATCTCTTCT-TTTT-GCCCT  357

Query  391  TTCAT--T-----GCAATTTTTGTACGACTTAATTGCATTTTGGTTTTTGAATGAGATGT  443
            |||||  |     ||||||||||||  |||| ||||| ||||| ||||||||||||||| 
Sbjct  358  TTCATAATTTATTGCAATTTTTGTATAACTTGATTGCTTTTTGTTTTTTGAATGAGATGC  417

Query  444  TTT  446
            |||
Sbjct  418  TTT  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16673992393


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5