BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12980.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915153 jgi|Araly1|915153|Al_scaffold_0009_122 1796 0.0
Ahg905694 jgi|Araly1|905694|Al_scaffold_0003_2822 566 2e-160
> Ahg915153 jgi|Araly1|915153|Al_scaffold_0009_122
Length=1185
Score = 1796 bits (972), Expect = 0.0
Identities = 1114/1185 (94%), Gaps = 0/1185 (0%)
Strand=Plus/Plus
Query 29 ATGGATTCTTCTTACCTTAGAATCTCTCTTTCTTTTCTCTTCTGGGCTTTACTACTCTCA 88
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 ATGGATTCTTCTTACCTTAGAATCTCTCTTTCTTTTGTCTTCTGGGCTTTGCTACTCTCA 60
Query 89 CCGGCTGTGTCACAGTCATCTTCTTGTTCGTCACAGACATTTTCCGGCGTCAAATCTTAC 148
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CCGGCTGTGTCACAGTCATCTTCTTGTTCGTCACAGACATTTTCCGGCGTCAGATCTTAC 120
Query 149 CCTCACTGTCTCGACCTCCCTGATCTTAAAGCCATTCTCCATTACTCTTATGACGCATCT 208
|||||||| || |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 121 CCTCACTGCCTTGACCTCCCTGATCTTAAAGCTTTTCTCCATTACTCTTATGACGCTTCT 180
Query 209 AACACAACTCTCGCCGTTGTTTTCTCTGCTCCACCGTCAAAACCTGGTGGTTGGATCGCT 268
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AACACCACTCTCGCCGTTGTTTTCTCTGCTCCACCGTCAAAACCTGGTGGCTGGATCGCT 240
Query 269 TGGGCTATTAACCCTAAATCCACCGGCATGGCTGGATCTCAAGCCCTCGTTGCCTCTAAG 328
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGGCTATTAACCCTAAATCTACCGGCATGGCTGGATCTCAAGCCCTCGTTGCCTCTAAA 300
Query 329 GACCCTAGCACCGGCGTTGCTTCCGTGACGACCCTTAACATCGTCTCTTACAGCTCTCTG 388
||||||| ||||||||||| || || ||||||||||| ||||||||||||| |||||
Sbjct 301 GACCCTAAAACCGGCGTTGCCTCTGTCACGACCCTTAATATCGTCTCTTACAATTCTCTT 360
Query 389 GTTCCCTCGAAACTGTCCTTTGACGTGTGGGATGTTAAGGCGGAGGAGGCGGCTAATGAC 448
||||||||||| || |||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 361 GTTCCCTCGAAGCTATCCTTTGAAGTGTGGGATATTAAGGCGGAGGAGGCGGCTAACGAC 420
Query 449 GGTGGAGCTTTACGAATCTTTGCGAAAGTGAAGGTTCCGGCGGATTTAGCGGCGAGTGGG 508
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 421 GGTGGAGCTTTGCGAATCTTTGCGAAGGTGAAGGTTCCGGCGGATTTGGCGGCGAATGGG 480
Query 509 AAGGTTAACCAGGTTTGGCAGGTTGGTCCGGGAGTGTCTAATGGGAGGATACAGGCTCAT 568
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 481 AAGGTTAACCAGGTTTGGCAGGTCGGTCCGGGAGTGTCTAATGGGAGGATACAGCCTCAT 540
Query 569 GATTTCAGCGGTCCCAATCTTAACTCAGTGGGATCACTCGATTTAACCGGGACCACCCCC 628
|||||||| ||||||||||| |||||| ||| | | ||||||||||||||| ||||| |
Sbjct 541 GATTTCAGTGGTCCCAATCTCAACTCATTGGCACCGCTCGATTTAACCGGGGCCACCACT 600
Query 629 GGAGTCCCTGTCTCCGGAGGTGGTGGTGCCGGTAATTCTAGAATCCACAAGAGAAATATC 688
|||||||||||||||||||| || |||||||| || |||||||| ||||||||||| |||
Sbjct 601 GGAGTCCCTGTCTCCGGAGGCGGCGGTGCCGGCAACTCTAGAATTCACAAGAGAAACATC 660
Query 689 CATGGAATATTGAACGCAGTGAGTTGGGGACTTCTATTTCCCATTGGAGCAATGATAGCT 748
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CATGGGATATTGAACGCTGTGAGTTGGGGACTTCTATTTCCCATTGGAGCAATGATAGCT 720
Query 749 AGGTATATGAGAATCTTTGAATCAGCAGATCCTGCTTGGTTTTACCTCCACGTGTCATGC 808
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGGTACATGAGAATCTTTGAATCAGCAGATCCTGCTTGGTTTTACCTCCACGTGTCATGC 780
Query 809 CAATTCTCTGCTTATGTCATCGGTGTTGCCGGATGGGCCACCGGACTCAAGCTTGGTTCA 868
|||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 781 CAATTCTCCGCTTATGCCATCGGTGTTGCCGGATGGGCCACCGGACTCAAACTCGGTTCC 840
Query 869 GAATCTAAAGGTATTCAGTACAACACTCACCGGAACATCGGCATCTGTCTCTTCTCTATA 928
|||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
Sbjct 841 GAATCTAAAGGTATTCAGTACACCACTCACCGGAACATAGGCATCAGTCTCTTCTCTTTG 900
Query 929 GCCACTCTTCAGATGTTTGCGATGCTGTTGCGGCCAAGGAAGGACCACAAGTTTAGATTC 988
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 GCCACTCTTCAGATGTTTGCGATGCTGTTGCGGCCAAGGAAGGACCACAAGTTTAGATAC 960
Query 989 GTTTGGAATATTTACCACCACGGAGTTGGATACTCTATCCTCATCCTTGGAATCATCAAT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTTTGGAATATTTACCACCACGGAGTTGGATACTCTATCCTCATCCTTGGAATCATCAAT 1020
Query 1049 GTTTTCAAAGGTCTTAGCATCTTGAATCCAAAGCATACTTACAAGACGGCTTATATCGCT 1108
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1021 GTTTTCAAAGGTCTTAGCATCTTGAACCCGAAGCATACTTACAAGACCGCTTATATCGCG 1080
Query 1109 GTGATTGGGACCTTAGGAGGCATCACGTTACTCTTGGAAGTTGTTACTTGGGTCATTGTC 1168
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1081 GTGATTGGGACCTTAGGAGGCATCACTTTACTCTTGGAAGTTGTTACTTGGGTAATTGTC 1140
Query 1169 CTCAAGAGAAAATCTGCCAAGTCTACAAAGCCTCTCAAGGCCTAA 1213
|||||||||||||||||||| || ||||||||||| || ||||||
Sbjct 1141 CTCAAGAGAAAATCTGCCAATTCCACAAAGCCTCTTAAAGCCTAA 1185
> Ahg905694 jgi|Araly1|905694|Al_scaffold_0003_2822
Length=1179
Score = 566 bits (306), Expect = 2e-160
Identities = 902/1182 (76%), Gaps = 72/1182 (6%)
Strand=Plus/Plus
Query 34 TTCTTCTTACC-TTAGAATCTCTCTTTCTTTTC-TCTTCTGGGCTTTACTACTCTCACCG 91
|||||||| || | ||||||||||| || ||| | |||| |||| | ||| ||||||||
Sbjct 6 TTCTTCTT-CCGTAAGAATCTCTCTCTC-CTTCATTTTCTTGGCTCTGCTAATCTCACCG 63
Query 92 GCTGTGTCACAGTCATCTTCTTGTTCGTCACAGACATTTTCCGGCG-TCAAATCTTACCC 150
|||| ||||| | | | ||| ||||||||| |||||||||| | ||| |||||||
Sbjct 64 TCTGTCTCACA---AAC--C-TGTAAGTCACAGACGTTTTCCGGCGAT-AAAACTTACCC 116
Query 151 TCACTGTCTCGACCTCCCTGATCTTAAAGCCATT-CTCCATTACTCTTATGACGCATCTA 209
|||||| || ||||||||| | || |||||| || || || || || || || || || |
Sbjct 117 TCACTGCCTTGACCTCCCTCAACTCAAAGCC-TTCCTACACTATTCCTACGATGCCTCCA 175
Query 210 ACACAACTCTCGCCGTTGTTTTCTCTGCTCCACCGTCAAAACCTGGTGGTTGGATCGCTT 269
|||||| ||||||||| || ||||||||||| ||| |||| |||||||| |||||||| |
Sbjct 176 ACACAAGTCTCGCCGTCGTCTTCTCTGCTCCGCCGGCAAAGCCTGGTGGATGGATCGCGT 235
Query 270 GGGCTATTAACCCTAA-ATCCACCGGCATGGCT-GGATCTCAAGCCCTCGTTGCCT-CTA 326
|||| ||||| || || | ||||| |||| | ||| ||||| |||| || || | | |
Sbjct 236 GGGCGATTAATCC-AACGGCTACCGGTATGG-TCGGAGCTCAAACCCTTGTCGCTTAC-A 292
Query 327 AGGACCCTA-GCACCGGCGTTG-C-TTCCGTGACGACCCTTAACA-TCGTCTCTTACAGC 382
|||| || | | | || |||| | || |||| ||| || |||| | | ||| || ||
Sbjct 293 AGGATCC-AGGTAATGGTGTTGCCGTT--GTGAAGACGCTAAACATTAG-CTCCTATAGT 348
Query 383 TCTCTGGTTCCCTCGAAACTGTCCTTTGACGTGTGGGATGTTAAGGCGGAGGAGGCGGCT 442
|| ||| |||| |||||| || | ||||| || |||||| | || || |||||||||||
Sbjct 349 TCGCTGATTCCGTCGAAATTGGCGTTTGATGTTTGGGATATGAAAGCCGAGGAGGCGGCG 408
Query 443 AATGACGGTGGAGCTTT-ACGAATCTTTGCGAAAGTGAAGGTTCCGGCGGATTTAGCGGC 501
| || || ||| |||| | |||||||||| | || ||||||||||| ||||| | ||
Sbjct 409 AGGGATGGAGGAACTTTGA-GAATCTTTGCTAGGGTTAAGGTTCCGGCTGATTTGGTTGC 467
Query 502 GAGTGGG-AAGGTTAACCAGGTTTGGCAGGTTGGTCCGGGAGT--GT-CTAATGGGAGGA 557
| ||| |||||||| ||||||||||| |||||| | | | | || || ||| | ||
Sbjct 468 -AAAGGGAAAGGTTAATCAGGTTTGGCAAGTTGGTTCTGAATTAGGTCCTGGTGGAATGA 526
Query 558 -T-ACAGGCTCATGATTTC-AGCGGTCCCAATCTTAAC-TC-AGTGGGATCACTCGATTT 612
| ||| || | |||| | | || | |||| | | || | |||| || || |||||
Sbjct 527 TTGGTAGG--CACGCTTTCGACCCGT-CGAATC-TCGCTTCTA-TGGGCTCTCTTGATTT 581
Query 613 AACCGG-GACCACCCCCGGAGTCCCTGTCTCCGGAGGTGGTGGTGCCGGT-AATTCTAGA 670
|| || || || | | | | | | ||| | | || || || | || ||| | | |
Sbjct 582 AAAAGGTGA-CAACAGCTGTGGCACAATCT-CTG-GG-GGCGGCG-AAGTAAATGCCAAA 636
Query 671 ATCCACAAGAGAAATATCCATGGAATATTGAACGCAGTGAGTTGGGGACTTCTATTTCCC 730
||| | || |||||||| ||||| ||||| ||||| |||||||||||| || | |||||
Sbjct 637 ATCAAGAACAGAAATATTCATGGGATATTAAACGCGGTGAGTTGGGGAATTTTGTTTCCG 696
Query 731 ATTGGAGCAATGATAGCTAGGTATATGAGAATCTTTGAATCAGCAGATCCTGCTTGGTTT 790
|| |||||||| ||||| ||||| |||||| | |||||||| || ||||| || ||||||
Sbjct 697 ATAGGAGCAATAATAGCCAGGTACATGAGAGTATTTGAATCCGCCGATCCGGCCTGGTTT 756
Query 791 TACCTCCACGTGTCATGCCAATTCTCTGCTTATGTCATCGGTGTTGCCGGATGGGCCACC 850
|||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 757 TACCTCCATGTGTCTTGTCAATTCTCTGCTTATGTCATCGGTGTTGCCGGTTGGGCCACC 816
Query 851 GGACTCAAGCTTGGTT-CAGAATCTAAAGG-TATTCAG-TACAACACTCACCGGAACATC 907
||||||||||| || | || || | || ||||| | | | | | ||||| ||||||
Sbjct 817 GGACTCAAGCTAGGCAAC-GAGTC-AGCGGGTATTC-GCTTCTCCGCCCACCGTAACATC 873
Query 908 GGCATCTGTC-TCTTCTCTATAGCCACTC-TTCAGATGTTTGCGATGCTGTTGCGGCC-A 964
|| || || | ||||| | | ||||| | ||||||||||||||||| |||||||||| |
Sbjct 874 GGTAT-TGCCCTCTTCACCCTTGCCAC-CATTCAGATGTTTGCGATGTTGTTGCGGCCTA 931
Query 965 AGGAAGGACCACAAGTTTAGATTCGT-TTGGAATATTTACCACCACGGAGTTGGATACT- 1022
|| ||| | ||||||| |||||| | ||||||||| |||||||| ||||| || || |
Sbjct 932 AGAAAG-ATCACAAGTACAGATTC-TATTGGAATATCTACCACCATGGAGTCGGCTA-TG 988
Query 1023 CTATCCTCATCCTTGGAATCATCAATGTTTTCAAAGGTCTTAGCATCTTGAATCCA-AAG 1081
| ||||||||||| || ||||| ||||| ||||||||||| | ||| ||||| ||| |||
Sbjct 989 CAATCCTCATCCTCGGGATCATTAATGTCTTCAAAGGTCTCAACATATTGAAACCACAAG 1048
Query 1082 CATACTTACAAGACGGCTTATATCGCTGTGATTGGGAC-CTTAGGAGGCATCACGTTACT 1140
| || |||||||||||||| || || ||||||| || ||| ||||| || | || ||
Sbjct 1049 -ACACGTACAAGACGGCTTACATTGCAGTGATTGCGATTCTT-GGAGGAATTGCTTTGCT 1106
Query 1141 CTTGGAAGTTGTTACTTGGGTCATTGTCCTCAAGAGAAAATC 1182
||| |||| | ||||||||| |||| ||||||||||||||
Sbjct 1107 CTTAGAAGCCATCACTTGGGTCGTTGTACTCAAGAGAAAATC 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5