BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13000.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359063 jgi|Araly1|359063|fgenesh1_pg.C_scaffold_9000103 1633 0.0
Ahg319217 jgi|Araly1|319217|fgenesh1_pm.C_scaffold_3002233 595 2e-169
> Ahg359063 jgi|Araly1|359063|fgenesh1_pg.C_scaffold_9000103
Length=1119
Score = 1633 bits (884), Expect = 0.0
Identities = 1027/1096 (94%), Gaps = 9/1096 (1%)
Strand=Plus/Plus
Query 47 AACCACCTCTTACCACCGGAGAACAAGATCCCGACTCTCAACTTCGACCATCTAGAGATT 106
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4 AACCACCTCTCACCACCGGAGAACAAGATCCCGACTCTCAACTTCGACCATCTAGAGGTT 63
Query 107 TTCTCAGCCCTTGGACGTGGATCTAAAGGAGTTGTGTTCTTAGTAAAAGCCGATAACAAA 166
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 64 TTCTCAGCCCTTGGTCGTGGATCTAAAGGAGTTGTGTTCCTCGTAAAAGCCGATAACGAA 123
Query 167 TGGCTTGCTTTAAAAGTCATACTAAGAGAATCAATCGAGTCAAAGAAGGCCAAAGATGAG 226
||||||||||||||||||||||||||||||||||| ||| |||||||| | |||||||||
Sbjct 124 TGGCTTGCTTTAAAAGTCATACTAAGAGAATCAATAGAGACAAAGAAGACAAAAGATGAG 183
Query 227 TACAAACGCATAAGTTTCGAACAAGGAGTGTTGTCTCGATTCGACCATCCTCTGTTTCCA 286
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 184 TACAAACGCATAAGTTTCGAACAAGGAGTGTTGTCTCGTTTCGACCATCCTCTGTTTCCA 243
Query 287 CGTCTTCATGGTGTTATATCCACCGATAAAGTTATCGGTTACGCGATTGATTACTGTCCT 346
||||||||||||||| |||| || ||||||||| ||||||||||||| ||||||||||||
Sbjct 244 CGTCTTCATGGTGTTTTATCTACTGATAAAGTTGTCGGTTACGCGATCGATTACTGTCCT 303
Query 347 GGAAGAGATCTCAACTCTTTAAGGAAAAAACAGTCGGAAGAAATGTTTTCCGATGAGATC 406
||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 304 GGACGAGATCTCAATTCTTTAAGGAAGAAACAGTCGGAAGAAATGTTTTCCGATGAGATC 363
Query 407 ATTAGATTTTACGCGGCGGAGCTTGTGATTGCACTTGAGTATTTGCATAATCAAGGAATT 466
|| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 364 ATAAGGTTTTATGCGGCGGAACTTGTGATCGCACTTGAGTATTTGCATAATCAAGGAATT 423
Query 467 GTGTACAGAGATTTGAAGCCTGATAATGTGATGATTCAAGAGAATGGTCATCTGATGCTT 526
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 424 GTGTACAGAGATTTGAAGCCAGATAATGTGATGATTCAAGAGAATGGTCATTTGATGCTT 483
Query 527 GTTGATTTTGATCTTTCGACGAATCTACCTCCTAGAACTCCACAATCTTCTTTTTCGTCG 586
|||||||| |||||||| |||||||||||||| |||||||| |||||||| ||| |||
Sbjct 484 GTTGATTTCGATCTTTCAACGAATCTACCTCCGAGAACTCCGCAATCTTC---TTCATCG 540
Query 587 TCACCGAGACTTTCGACGGCGACGAAG-AAAGAAAGGTCTATCTTCGCATTTTCCGGTTT 645
|| ||||||||||||||||||||| || |||||| ||||| | |||||||||||||||||
Sbjct 541 TCGCCGAGACTTTCGACGGCGACG-AGAAAAGAACGGTCTTTGTTCGCATTTTCCGGTTT 599
Query 646 ATGTAACTCCGGAATCTCCCCGGACGACTCGGTTTCGAG-ATCCTCCGAGTCGGAGTTTT 704
|||||||||||||||||||||||||||||||||||||| || |||||||||| | |
Sbjct 600 TTGTAACTCCGGAATCTCCCCGGACGACTCGGTTTCGAGAAT-CTCCGAGTCGTCCTCGT 658
Query 705 CAGGAGAGAAGTCGAACTCGTTTGTTGGAACAGAGGAATATGTTGCGCCGGAGGTAATCA 764
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 659 CGGGAGAGAAGTCGAATTCGTTTGTTGGAACAGAGGAATATGTTGCGCCGGAGGTTATTA 718
Query 765 CCGGAAGTGGCCATGACTTCGCCGTGGATTGGTGGTCGTTGGGAGTGGTTTTGTATGAGA 824
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CCGGGAGTGGCCATGACTACGCCGTGGATTGGTGGTCGTTGGGAGTGGTTTTGTATGAGA 778
Query 825 TGTTGTACGGAGCGACGCCGTTTAGGGGGTCCAACCGTAAAGAGACTTTT-TTAAAGATA 883
||||||||||||||||||||||| | || || ||| | |||||||||||| || ||||||
Sbjct 779 TGTTGTACGGAGCGACGCCGTTTCGAGGATCGAACAGGAAAGAGACTTTTCTT-AAGATA 837
Query 884 TTAACTGAACCGCCGAGTTTGGTCGGAGAAACGACATCGTTAAGAGACTTGGTAAGAAAA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTAACTGAACCGCCGAGTTTGGTCGGAGAAACGACATCGTTAAGAGACTTGGTAAGAAAA 897
Query 944 CTGTTGGAGAAAGATCCTAGCCGTAGGATTAATGTTGAAGGAATCAAGGGACATGATTTC 1003
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 898 CTGTTGGAGAAAGATCCTAGCCCTAGGATTAATGTGGAAGGAATCAAGGGACACGATTTC 957
Query 1004 TTTAAAGGGTTGGATTGGGATTTGGTGCTTAAGGTATCACGACCACCGTATATTCCGGCG 1063
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTTAGAGGGTTGGATTGGGATTTGGTGCTTAAGGTATCACGACCACCGTATATTCCGGCG 1017
Query 1064 CCGGAAAATTATGAGATTTCGAAAATCGACGTGGAGAAATTCGTCCATGAAATATTTACT 1123
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1018 CCGGGAAATTATGAGATTTCGAAAATCGATGTGGAGAAATTCGTCCATGAAATATTTGCT 1077
Query 1124 AAATGTGAACATAATG 1139
||||||||||||||||
Sbjct 1078 AAATGTGAACATAATG 1093
> Ahg319217 jgi|Araly1|319217|fgenesh1_pm.C_scaffold_3002233
Length=1272
Score = 595 bits (322), Expect = 2e-169
Identities = 706/884 (80%), Gaps = 56/884 (6%)
Strand=Plus/Plus
Query 219 AAGATGAGTACAAACGCATAAGTTTCGAACAAGGAGTGTTGTCTC-GATTCGACCATCCT 277
|||||||||| |||||| | |||||||| |||||||| || | ||||||||||||||
Sbjct 191 AAGATGAGTATAAACGCGTGAGTTTCGAGCAAGGAGTATT-AAGCAGATTCGACCATCCT 249
Query 278 CTGTTTCC-ACGTCTTCATGGTGTTATATCCACCGATAAAGTTATCGGTTACGCGATTGA 336
|| ||||| | |||||| || ||| || | ||||||||||| |||||||| || || ||
Sbjct 250 CTTTTTCCGTC-TCTTCACGGCGTTTTAGCTACCGATAAAGTCATCGGTTATGCCATCGA 308
Query 337 TTACTGTCCTGGA-AGAGATCTCAACTCTTTAAGGAAAAAACAGTCGGAAGAA-ATGTTT 394
||| ||||| ||| | | ||||||| ||||| ||||||| || |||||| || ||||||
Sbjct 309 TTATTGTCCGGGACA-AAATCTCAATTCTTTGAGGAAAATGCAATCGGAA-AATATGTTT 366
Query 395 TCCGATGAGATCATTAGATTTTACGCGGCGGAGCTTGTGA-TTGCACTTGAGTATTTGCA 453
||||| || || || ||||||||||||||||||||||| | | |||||||| ||||||||
Sbjct 367 TCCGACGACATTATCAGATTTTACGCGGCGGAGCTTGT-ACTAGCACTTGATTATTTGCA 425
Query 454 TAATCAAGGAATTGTGTACAGAGATTTGAAGCCTGATAATGTGATGATTCAAGAGAATGG 513
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 426 TAATCAAGGAATTGTGTACAGAGATTTGAAGCCAGATAATGTGATGATCCAAGAAAATGG 485
Query 514 TCATCTGATGCTTGTTGATTTTGATCTTTCGACGAATCTACCTCCTAGAACTCCACAATC 573
||| | |||||| | ||||| |||||||| || |||||| |||| ||||| || ||| |
Sbjct 486 ACATTTAATGCTTATAGATTTCGATCTTTCTACAAATCTAGCTCCAAGAACACCGCAA-C 544
Query 574 TTCTTTTTCGTCGTCACCG---AGACTTTCGACGGCGACGA--AGAAAGAAAGGTCTATC 628
| | || |||||||| | || ||| |||| |||| ||||||||| |||| |
Sbjct 545 --CGT---CGCCGTCACCGTCTAAACCGTCGCCGGCAACGACGAGAAAGAAACGTCT--C 597
Query 629 TTC-GCATTTTCCGGTTTATGTAACTCCGGAATCTCCCCGGACGACTCGGTTTCGAG--A 685
||| || || ||| |||| |||||||| |||||||| ||| | || ||| | |||| |
Sbjct 598 TTCCGC-TTCTCCAGTTTTTGTAACTCAGGAATCTCGCCGCAAGAATCGATCTCGATTCA 656
Query 686 -TC--C-TC--CG--AGTCG-G--AGTTT--TCAGGAGAGAAGTCGAACTCGTTT-GTTG 731
|| | || | || || | || || |||||||| |||||||| || ||| || |
Sbjct 657 CTCATCATCTACATTAGCCGTGTCAGATTCATCAGGAGAAAAGTCGAATTC-TTTCGTCG 715
Query 732 GAACAGAGGAATATGTTGCGCCGGAGGTAATCACCGGA-AGTGGCCATGACTTCGCCGTG 790
||||||||||||| || ||||||||||||||||||||| | || || || ||||||||
Sbjct 716 GAACAGAGGAATACGTAGCGCCGGAGGTAATCACCGGAGAC-GGTCACGATTTCGCCGTT 774
Query 791 GATTGGTGGTCGTT-GGGAGTGGTTTTGTATGAGATGTTGTACGGAGCGACGCCGTTTAG 849
|||||||||||||| ||| || ||| | || ||||||||||| ||| |||| ||||||||
Sbjct 775 GATTGGTGGTCGTTAGGG-GTTGTTCTATACGAGATGTTGTATGGAACGACACCGTTTAG 833
Query 850 GGGGTCCAACCGTAAAGAGACTTTTTTAAAG-ATATTAACTGAACCGCCGAGT-TTGGTC 907
||| || ||||| |||||||| |||| | | || ||| || ||||||||| | || |
Sbjct 834 GGGATCGAACCGGAAAGAGACGTTTT-ACCGGATTTTATCTAAACCGCCGAATCTTAC-C 891
Query 908 GGAGAAACGACATCGTTAAGAGACTTGGTAAGAAAACTGTTGGAGAAAGATCCTAGCCGT 967
|| |||||||| ||||| || || ||| | |||| | |||||||||||||||||||||||
Sbjct 892 GGTGAAACGACGTCGTTGAGGGATTTGATTAGAAGATTGTTGGAGAAAGATCCTAGCCGT 951
Query 968 AGGATTAATGTTGAAGGAA-TCAAGGGACATGATTTCTTTAAAGG-GTTGGATTGGGATT 1025
|||||||| ||||| |||| |||| || || |||||||| ||||| || | |||||||
Sbjct 952 AGGATTAACGTTGA-GGAAATCAAAGGTCACGATTTCTTCAAAGGAGTAG-ATTGGGAGA 1009
Query 1026 TGGTGCTTAAGGTATC-ACGACCACCGTATATTCCGGCGCCGGA 1068
|||| || ||| || | |||| ||||||||||||||||||||
Sbjct 1010 AGGTGATTTTGGTTTCTA-GACCGCCGTATATTCCGGCGCCGGA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5