BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13010.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497105 jgi|Araly1|497105|fgenesh2_kg.9__70__AT4G13010.1 1829 0.0
Ahg891874 jgi|Araly1|891874|Al_scaffold_0007_3860 885 0.0
> Ahg497105 jgi|Araly1|497105|fgenesh2_kg.9__70__AT4G13010.1
Length=1257
Score = 1829 bits (990), Expect = 0.0
Identities = 1182/1271 (93%), Gaps = 28/1271 (2%)
Strand=Plus/Plus
Query 19 TGATATACCGCTTTTACCCCTTAAGCCTCTCCGCGTAAAACCGAGAACAAA-ATCTTAAG 77
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 9 TGATATACCGCTTTTACCCCTTAAGCCTCTCCGCGTAAAACCGAGAACAAATATCTTAAG 68
Query 78 CACCGTTG-TTCCGATTCAGAGATCA---TCGTCGTCGTCGTTCAGAAACCTTCAAAAAT 133
|||||||| || |||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 69 CACCGTTGTTTTCGATTCAGAGATCATCGTCGTCGTCGTCGTTCA-AAACCTTCAACAAT 127
Query 134 GGCTGGAAAACTCATGCACGCTCTTCAGTACAACTCTTACGGTGGTGGCGCCGCCGGATT 193
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 128 GGCCGGAAAACTCATGCACGCTCTTCAGTACGACTCTTACGGTGGTGGCGCCGCCGCTTT 187
Query 194 AGAGCATGTTCAAGTTCCGGTTCCAACACCAAAGAGTAATGAGGTTTGCCTGAAATTAGA 253
| ||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||
Sbjct 188 AAAGCATGTTCAAGTTCTGGTTCCAACACCGAAGAGTAATGAGGTGTGCCTGAAATTAGA 247
Query 254 AGCTACTAGTCTAAACCCTGTTGATTGGAAAATTCAGAAAGGAATGATCCGCCCATTTCT 313
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 248 AGCTACTAGTTTAAACCCTGTTGATTGGAAAATTCAGAAAGGAATGATCCGCCCTTTTCT 307
Query 314 GCCCCGCAAGTTCCCCTGCATTCCAGCTACTGATGTTGCTGGAGAGGTCGTTGAGGTTGG 373
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 308 GCCCCGCAAGTTCCCCTGCATTCCTGCTACTGATGTTGCTGGAGAAGTCGTTGAGGTTGG 367
Query 374 ATCAGGAGTAAAAAATTTTAAGGCTGGTGACAAAGTTGTAGCGGTTCTTAGCCATCTAGG 433
||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 368 ATCAGGAGTCAAGAATTTCAAGGCCGGTGACAAAGTTGTAGCGGTTCTTAGCCATCTAGG 427
Query 434 TGGAGGTGGACTTGCTGAGTTCGCTGTTGCAACCGAGAAGCTGACTGTCAAAAGACCTCA 493
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 428 TGGAGGTGGACTTGCTGAGTTCGCTGTTGCAAGCGAGAAGCTGACTGTCAAAAGACCTCA 487
Query 494 AGAAGTGGGAGCAGCTGAAGCAGCAGCTTTACCTGTGGCGGGTCTAACCGCTCTCCAAGC 553
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 488 AGAAGTGGGAGCAGCTGAAGCAGCCGCTTTACCTGTGGCGGGTCTAACCGCTCTCCAAGC 547
Query 554 TCTTACTAATCCTGCGGGGTTGAAGCTGGATGGTACAGGCAAGAAGGCGAACATCCTGGT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TCTTACTAATCCTGCGGGGTTGAAGCTGGATGGTACAGGCAAGAAGGCGAACATCCTGGT 607
Query 614 CACAGCAGCATCTGGTGGGGTTGGTCACTATGCAGTCCAGCTGGCAAAACTTGCAAATGC 673
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 608 CACAGCAGCATCTGGTGGGGTTGGCCACTATGCAGTCCAGCTGGCAAAACTTGCGAACGC 667
Query 674 TCACGTAACCGCTACATGTGGTGCCCGGAACATAGAGTTTGTCAAATCGTTGGGAGCGGA 733
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 668 TCATGTAACCGCTACATGTGGTGCCCGGAACATAGACTTTGTCAAATCGTTGGGAGCGGA 727
Query 734 TGAGGTTCTCGACTACAAGACTCCCGAGGGAGCCGCCCTCAAGAGTCCGTCGGGTAAAAA 793
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 728 TGAGGTTCTCGACTACAAGACTCCCGAGGGAGCTGCCCTCAAGAGTCCGTCAGGTAAGAA 787
Query 794 ATATGACGCTGTGGTCCATTGTGCAAACGGGATTCCATTTTCGGTATTCGAACCAAATTT 853
|||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 788 ATATGACGCTGTAGTTCATTGTGCAAACGGGATTCCATTTTCAACATTCGAACCAAATCT 847
Query 854 GTCGGAAAACGGGAAGGTGATAGACATCACACCGGGGCCTAATGCAATGTGGACTTATGC 913
|||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||
Sbjct 848 GTCGGAAAACGGGAAGGTGATAGACATCACGCCGGGTCCTAGTGCCATGTGGACTTATGC 907
Query 914 GGTTAAGAAAATAACCATGTCAAAGAAGCAGTTAGTGCCACTCTTGTTGATCCCAAAAGC 973
|||||||||| ||||||||||||||||||| || || || ||||||||||||||||||||
Sbjct 908 GGTTAAGAAAGTAACCATGTCAAAGAAGCAATTGGTACCGCTCTTGTTGATCCCAAAAGC 967
Query 974 TGAGAATTTGGAGTTTATGGTGAATCTAGTGAAAGAAGGGAAAGTGAAGACAGTGATTGA 1033
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 968 TGAGAATTTGGAGTTCATGGTGAATCTAGTGAAAGAAGGGAAAGTGAAGACTGTGATTGA 1027
Query 1034 CTCAAAGCATCCTTTGAGCAAAGCGGAGGATGCTTGGGCCAAAAGTATCGATGGTCATGC 1093
||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1028 CTCGAAGCACCCTCTGAGCAAAGCGGAAGATGCTTGGGCCAAAAGTATCGATGGCCATGC 1087
Query 1094 TACTGGGAAGATCATTGTCGAGCCATAAGAGCGTTGTA-GCCATCTTTGACTGTCTGTGA 1152
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1088 TACTGGGAAGATCATTGTCGAGCCATAAGAGCTTTTTTTGCCATCTTTGACTGTCTGTGA 1147
Query 1153 ATGTGATAATAGATGTTAAAAGTTTGCGTACCGTTTACAGAATGTTTTATGTTGTTTTGT 1212
| | || | | || |||| | | ||||||| | || |||||||||||||||
Sbjct 1148 A----A-AA--G-T-TT----GTTTT-G--C-GTTTACACATTGCTTTATGTTGTTTTGT 1190
Query 1213 TTAATATACCCGAGTATGTCGAAAGTTACATGAAAAGAAAATTTGGATGAAATAAATAAT 1272
|||||||||||||||||||||||| ||| |||| |||||||||||| | | || |||||
Sbjct 1191 TTAATATACCCGAGTATGTCGAAAATTATATGACAAGAAAATTTGG-T-A--TAGATAAT 1246
Query 1273 ACTTGTTAGGT 1283
|||||||||||
Sbjct 1247 ACTTGTTAGGT 1257
> Ahg891874 jgi|Araly1|891874|Al_scaffold_0007_3860
Length=831
Score = 885 bits (479), Expect = 0.0
Identities = 717/832 (86%), Gaps = 16/832 (2%)
Strand=Plus/Plus
Query 297 ATGATCCGCCCATTTCTGCCCCGCAAGTTCCCCTGCATTCCAGCTACTGATGTTGCTGGA 356
||||| || || |||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 1 ATGATTCGGCCTTTTCTGCCTCGCAAGTTCCCCTTCATTCCTGCTACTGATGTTGCTGGT 60
Query 357 GAGGTCGTTGAGGTTGGATCAGGAGTAAAAAATTTTAAGGCTGGTGACAAAGTTGTAGCG 416
|||||||||||||||||||||||||| || ||||| |||||||||||||||||||| | |
Sbjct 61 GAGGTCGTTGAGGTTGGATCAGGAGTCAAGAATTTAAAGGCTGGTGACAAAGTTGTTG-G 119
Query 417 G-TTCTTAGCCATCTAGGTGGAGGTGGACTTGCTGAGTTCGCT-GTTGCAACCGAGAAGC 474
| || | ||| ||||| |||||||| |||||||||| || | |||| || || ||||
Sbjct 120 GATTGTCAGCTATCTAACCGGAGGTGGTCTTGCTGAGTACG-TAGTTGTAAGTGAAAAGC 178
Query 475 TGACTGTCAAAAGACCTCAAGAAGTGGGAGCAGCTGAAGCAGCAGCTTTACCTGTGGCGG 534
|||| ||||||| ||||||||||||||||||||||||||||| || || |||||| | |
Sbjct 179 TGACCATCAAAAGGCCTCAAGAAGTGGGAGCAGCTGAAGCAGCTGCGTTGCCTGTGCCAG 238
Query 535 GTCTAACCGCTCTCCAAGCTCTTACTAATC-CTGCGGGGTTGAAGCTGGATGGTACAGGC 593
||||||| ||||| | | ||| || ||| | ||||||||||| |||||||| |||| |
Sbjct 239 GTCTAACTGCTCTTTATGTTCTAACGCATCAC-GCGGGGTTGAAACTGGATGGCACAGAC 297
Query 594 AAGAAGGCGAACATCCTGGTCACAGCAGCATCTGGTGGGGTTGGTCACTATGCAGTCCAG 653
||| ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 AAGCAGGCGAATATCTTGGTCACAGCAGCATCTGGTGGGGTTGGCCACTATGCAGTCCAG 357
Query 654 CTGGCAAAACTTGCAAATGCTCACGTAACCGCTACATGTGGTGCCCGGAACATAGAGTTT 713
|||||||| |||| || ||||| ||||| || |||||||| ||||| ||||| || |||
Sbjct 358 CTGGCAAAGCTTGGGAACGCTCATGTAACAGCCACATGTGGAGCCCGAAACATCGATTTT 417
Query 714 GTCAAATCGTTGGGAGCGGATGAGGTTCTCGACTACAAGACTCCCGAGGGAGCCGCCCTC 773
|| |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 418 GTAAAATCGTTAGGAGCGGACGAGGTTCTCGACTACAAGACTCCTGAGGGAGCCACCCTC 477
Query 774 AAGAGTCCGTCGGGTAAAAAATATGACGCTGTGGTCCATTGTGCAAACGGGATTCCATTT 833
|||||||| || ||||| |||||||||| |||| ||||||| ||||| | || || ||
Sbjct 478 AAGAGTCCATCAGGTAAGAAATATGACGTTGTGATCCATTGCGCAAATAGTATCCCGTTC 537
Query 834 TCGGTATTCGAACCAAATTTGTCGGAAAACGGGAAGGTGATAGACATCACACCGGGGCCT 893
|| |||||||| ||||||||| |||||||| ||||| ||||||||||| || |||||
Sbjct 538 TCAACATTCGAACTAAATTTGTCCGAAAACGGAAAGGTTATAGACATCACGCCAAGGCCT 597
Query 894 AATGCAATGTGGACTTATGCGGTTAAGAAAATAACCATGTCAAAGAAGCAGTTAGTGCCA 953
| ||| || |||||||||||||||||||| |||| ||||| |||||||| || ||||||
Sbjct 598 AGTGCCATATGGACTTATGCGGTTAAGAATTTAACTATGTCGAAGAAGCAATTTGTGCCA 657
Query 954 CTCTTGTTGATCC-CAAA--AGCTGAGAATTTGGAGT-TTATGGTGAATCTAGTGAAAGA 1009
||||| ||||||| ||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 658 CTCTTTTTGATCCAAAAATTAGCTGAGAATTTGGAGTATT-TGGTGAATCTAGTGAAAGA 716
Query 1010 AGGGAAAGTGAAGACAGTGATTGACTCAAAGCA-TCCTTTGAGCAAAGCGGAGGATGCTT 1068
||||||||||||||| ||||||||||| ||||| || |||||||||||| ||||||||||
Sbjct 717 AGGGAAAGTGAAGACTGTGATTGACTCGAAGCACTC-TTTGAGCAAAGCCGAGGATGCTT 775
Query 1069 GG--G-CCAAAAGTATCGATGGTCATGCTACTGGGAAGATCATTGTCGAGCC 1117
|| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 776 GGCCGGCCAAAAGTATCGATGGCCATGCTACTGGGAAGATCATTGTCGAGCC 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5