BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13020.3 Length=1867 Score E Sequences producing significant alignments: (Bits) Value Ahg915150 jgi|Araly1|915150|Al_scaffold_0009_119 2034 0.0 > Ahg915150 jgi|Araly1|915150|Al_scaffold_0009_119 Length=1344 Score = 2034 bits (1101), Expect = 0.0 Identities = 1265/1345 (94%), Gaps = 7/1345 (1%) Strand=Plus/Plus Query 183 GAAAGTGATGATGGTGTTTGTGGTTTTTGTTATGTGTAGGTATAAGATTTTGGAAGAGCT 242 ||||||||||||||| |||||| ||||| | | |||||||||||||||||||||||||| Sbjct 4 GAAAGTGATGATGGTACTTGTGG-TTTTGGTCTATGTAGGTATAAGATTTTGGAAGAGCT 62 Query 243 TGGTGATGGTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTTGT 302 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 63 TGGTGATGGTACTTGTGGTAGTGTATATAAAGCTGTAAACTTGGAAACATATGAAGTTGT 122 Query 303 TGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGA 362 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 TGCTGTTAAAAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGA 182 Query 363 AGTTAAGGCTCTTCGTAAGCTAAATCATCCTCATATCATAAAGTTGAAGGAGATTGTGAG 422 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 AGTAAAGGCTCTTCGTAAGCTAAATCATCCTCATATCATAAAGTTGAAGGAGATTGTGAG 242 Query 423 AGAACATAATGAGCtttttttCATCTTTGAGTGCATGGATCACAATCTGTACCATATAAT 482 |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 243 GGAACATAATGAGCTGTTTTTCATCTTCGAGTGCATGGACCACAATCTGTACCATATAAT 302 Query 483 GAAAGAAAGGGAACGACCTTTTTCTGAAGGAGAAATAAGAAGTTTTATGTCTCAGATGCT 542 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 303 GAAAGAAAGGGAACGACCTTTTTCTGAAGGAGAAATCAGAAGTTTTATGTCGCAGATGCT 362 Query 543 GCAAGGGCTCGCACACATGCATAAAAACGGTTATTTCCATCGAGACCTGAAACCTGAGAA 602 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 363 GCAAGGGCTCGCACATATGCATAAAAACGGTTATTTCCATCGAGACCTCAAACCCGAGAA 422 Query 603 TTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGTTGGCTAGAGAAGTTGC 662 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 423 TTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGCTCGCTAGAGAAGTTGC 482 Query 663 ATCTATGCCTCCTTACACTGAATATGTGTCCACACGTTGGTATCGAGCTCCAGAAGTTTT 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 ATCTATGCCTCCTTACACTGAATATGTGTCCACACGTTGGTATCGAGCTCCAGAAGTTTT 542 Query 723 GCTACAGTCTTCATTATACACTCCTGCAGTTGACATGTGGGCAGTTGGAGCGATACTAGC 782 |||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||| Sbjct 543 GCTACAGTCTTCATCATACACTCCTGCAGTTGACATGTGGGCAGTGGGGGCGATATTAGC 602 Query 783 TGAGCTTTACGCTTTAACTCCGTTATTTCCTGGTGAAAGTGAGATAGATCAATTATACAA 842 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 TGAGCTTTACGCTTTATCTCCGTTATTTCCTGGTGAAAGTGAGATAGATCAATTATACAA 662 Query 843 AATCTGCTGTGTTCTTGGCAAGCCGGACTGGACCACGTTCCCTGAAGCGAAAAGCATATC 902 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 663 GATCTGCTGTGTTCTTGGCAAGCCGGATTGGACCACCTTCCCTGAAGCGAAAAGTATATC 722 Query 903 TCGAATTATGAGTATTAGTCACACAGAGTTTCCGCAGACACGAATTGCTGATTTACTTCC 962 |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| || Sbjct 723 TCGAATAATGAGTATTAGTCACACAGAATTTCCGCAGACACGAATTGCTGATCTACTCCC 782 Query 963 CAATGCTGCTCCTGAAGCTATTGATTTGATCAATCGACTTTGCTCATGGGATCCATTGAA 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 CAATGCTGCTCCTGAAGCTATTGATTTGATCAATCGACTTTGCTCATGGGATCCATTGAA 842 Query 1023 ACGACCAACTGCTGATGAGGCACTAAATCATCCATTTTTCAGTATGGCTACGCAGGCTTC 1082 |||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| Sbjct 843 ACGACCAACTGCTGATCAGGCACTAAATCATCCGTTTTTCAGTATGGCTACACAGGCTTC 902 Query 1083 ATATCCTATCCATGACCTTGAGCTGAGGCTTGATAATATGGCGGCGTTGCCTAATCTTGA 1142 ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||| || Sbjct 903 ATATCCTCTCCATGACCTTGAGCTGAGGCTTAATAACATGGCGGCAATGCCTAATCTCGA 962 Query 1143 GCTAAATCTCTGGGACTTTAACAGAGAACCTGAAGAATGTTTTCTTGGCTTGACACTAGC 1202 ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| || Sbjct 963 GCTAAATCTCTGGGACTTTAATACTGAACCTGAGGAATGTTTTCTTGGCTTGACACTGGC 1022 Query 1203 TGTGAAACCAAGTGCTCCCAAACTAGAAATGCTCCGCAATGTATCTCAGGACATGAGCGA 1262 ||| |||||||||||||| |||||||||||| | || ||||||||||||||||||||||| Sbjct 1023 TGTAAAACCAAGTGCTCCTAAACTAGAAATGGTGCGGAATGTATCTCAGGACATGAGCGA 1082 Query 1263 GAATTTTCTCTTTTGCCCCGGGGTCAACAATGATCGAGAACCATCAGTTTTCTGGTCTCT 1322 |||||||||||||| ||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct 1083 GAATTTTCTCTTTTTCCCTGGGGTAAATAATGATCGGGAACCATCAGTTTTCTGGTCTCT 1142 Query 1323 GCTCTCTCCTGATGAAAACGGCCTCCACGCGCCAGTTGAATCATCTCCTTTATCTTTGTC 1382 |||||||||||||||||| ||||||||| | || ||||||||||||||||||||| |||| Sbjct 1143 GCTCTCTCCTGATGAAAATGGCCTCCACACTCCGGTTGAATCATCTCCTTTATCTCTGTC 1202 Query 1383 TTTCAGCAGTCCAATGCAGCAACA--CA-CAGTTGGACCTCCACAGTCGAGTGGCTTCAC 1439 ||||| |||||||||||| || || || | |||||||| ||||||| || ||||| Sbjct 1203 CTTCAG---TCCAATGCAGCATCATACAACACTGGGACCTCCGCAGTCGACAGGGTTCAC 1259 Query 1440 AATGACATCATCAATGCAACCGAATATGTTGGACCGCCCGTGGATGGCCGTGTCTGCGCC 1499 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1260 AATGACATCATCAGTGCAACCGAATATGTTGGACCGCCCGTGGATGGCTGTGTCTGCGCC 1319 Query 1500 GTTTCAACAAAGTCATTACCTCTGA 1524 |||||||||||||||||||||||| Sbjct 1320 ATTTCAACAAAGTCATTACCTCTGA 1344 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70124141045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5