BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13020.3
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915150 jgi|Araly1|915150|Al_scaffold_0009_119 2034 0.0
> Ahg915150 jgi|Araly1|915150|Al_scaffold_0009_119
Length=1344
Score = 2034 bits (1101), Expect = 0.0
Identities = 1265/1345 (94%), Gaps = 7/1345 (1%)
Strand=Plus/Plus
Query 183 GAAAGTGATGATGGTGTTTGTGGTTTTTGTTATGTGTAGGTATAAGATTTTGGAAGAGCT 242
||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||||||
Sbjct 4 GAAAGTGATGATGGTACTTGTGG-TTTTGGTCTATGTAGGTATAAGATTTTGGAAGAGCT 62
Query 243 TGGTGATGGTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTTGT 302
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 63 TGGTGATGGTACTTGTGGTAGTGTATATAAAGCTGTAAACTTGGAAACATATGAAGTTGT 122
Query 303 TGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGA 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TGCTGTTAAAAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGA 182
Query 363 AGTTAAGGCTCTTCGTAAGCTAAATCATCCTCATATCATAAAGTTGAAGGAGATTGTGAG 422
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGTAAAGGCTCTTCGTAAGCTAAATCATCCTCATATCATAAAGTTGAAGGAGATTGTGAG 242
Query 423 AGAACATAATGAGCtttttttCATCTTTGAGTGCATGGATCACAATCTGTACCATATAAT 482
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 243 GGAACATAATGAGCTGTTTTTCATCTTCGAGTGCATGGACCACAATCTGTACCATATAAT 302
Query 483 GAAAGAAAGGGAACGACCTTTTTCTGAAGGAGAAATAAGAAGTTTTATGTCTCAGATGCT 542
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 303 GAAAGAAAGGGAACGACCTTTTTCTGAAGGAGAAATCAGAAGTTTTATGTCGCAGATGCT 362
Query 543 GCAAGGGCTCGCACACATGCATAAAAACGGTTATTTCCATCGAGACCTGAAACCTGAGAA 602
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 363 GCAAGGGCTCGCACATATGCATAAAAACGGTTATTTCCATCGAGACCTCAAACCCGAGAA 422
Query 603 TTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGTTGGCTAGAGAAGTTGC 662
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 423 TTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGCTCGCTAGAGAAGTTGC 482
Query 663 ATCTATGCCTCCTTACACTGAATATGTGTCCACACGTTGGTATCGAGCTCCAGAAGTTTT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATCTATGCCTCCTTACACTGAATATGTGTCCACACGTTGGTATCGAGCTCCAGAAGTTTT 542
Query 723 GCTACAGTCTTCATTATACACTCCTGCAGTTGACATGTGGGCAGTTGGAGCGATACTAGC 782
|||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 543 GCTACAGTCTTCATCATACACTCCTGCAGTTGACATGTGGGCAGTGGGGGCGATATTAGC 602
Query 783 TGAGCTTTACGCTTTAACTCCGTTATTTCCTGGTGAAAGTGAGATAGATCAATTATACAA 842
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TGAGCTTTACGCTTTATCTCCGTTATTTCCTGGTGAAAGTGAGATAGATCAATTATACAA 662
Query 843 AATCTGCTGTGTTCTTGGCAAGCCGGACTGGACCACGTTCCCTGAAGCGAAAAGCATATC 902
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 663 GATCTGCTGTGTTCTTGGCAAGCCGGATTGGACCACCTTCCCTGAAGCGAAAAGTATATC 722
Query 903 TCGAATTATGAGTATTAGTCACACAGAGTTTCCGCAGACACGAATTGCTGATTTACTTCC 962
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 723 TCGAATAATGAGTATTAGTCACACAGAATTTCCGCAGACACGAATTGCTGATCTACTCCC 782
Query 963 CAATGCTGCTCCTGAAGCTATTGATTTGATCAATCGACTTTGCTCATGGGATCCATTGAA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CAATGCTGCTCCTGAAGCTATTGATTTGATCAATCGACTTTGCTCATGGGATCCATTGAA 842
Query 1023 ACGACCAACTGCTGATGAGGCACTAAATCATCCATTTTTCAGTATGGCTACGCAGGCTTC 1082
|||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 843 ACGACCAACTGCTGATCAGGCACTAAATCATCCGTTTTTCAGTATGGCTACACAGGCTTC 902
Query 1083 ATATCCTATCCATGACCTTGAGCTGAGGCTTGATAATATGGCGGCGTTGCCTAATCTTGA 1142
||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||| ||
Sbjct 903 ATATCCTCTCCATGACCTTGAGCTGAGGCTTAATAACATGGCGGCAATGCCTAATCTCGA 962
Query 1143 GCTAAATCTCTGGGACTTTAACAGAGAACCTGAAGAATGTTTTCTTGGCTTGACACTAGC 1202
||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||
Sbjct 963 GCTAAATCTCTGGGACTTTAATACTGAACCTGAGGAATGTTTTCTTGGCTTGACACTGGC 1022
Query 1203 TGTGAAACCAAGTGCTCCCAAACTAGAAATGCTCCGCAATGTATCTCAGGACATGAGCGA 1262
||| |||||||||||||| |||||||||||| | || |||||||||||||||||||||||
Sbjct 1023 TGTAAAACCAAGTGCTCCTAAACTAGAAATGGTGCGGAATGTATCTCAGGACATGAGCGA 1082
Query 1263 GAATTTTCTCTTTTGCCCCGGGGTCAACAATGATCGAGAACCATCAGTTTTCTGGTCTCT 1322
|||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct 1083 GAATTTTCTCTTTTTCCCTGGGGTAAATAATGATCGGGAACCATCAGTTTTCTGGTCTCT 1142
Query 1323 GCTCTCTCCTGATGAAAACGGCCTCCACGCGCCAGTTGAATCATCTCCTTTATCTTTGTC 1382
|||||||||||||||||| ||||||||| | || ||||||||||||||||||||| ||||
Sbjct 1143 GCTCTCTCCTGATGAAAATGGCCTCCACACTCCGGTTGAATCATCTCCTTTATCTCTGTC 1202
Query 1383 TTTCAGCAGTCCAATGCAGCAACA--CA-CAGTTGGACCTCCACAGTCGAGTGGCTTCAC 1439
||||| |||||||||||| || || || | |||||||| ||||||| || |||||
Sbjct 1203 CTTCAG---TCCAATGCAGCATCATACAACACTGGGACCTCCGCAGTCGACAGGGTTCAC 1259
Query 1440 AATGACATCATCAATGCAACCGAATATGTTGGACCGCCCGTGGATGGCCGTGTCTGCGCC 1499
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 AATGACATCATCAGTGCAACCGAATATGTTGGACCGCCCGTGGATGGCTGTGTCTGCGCC 1319
Query 1500 GTTTCAACAAAGTCATTACCTCTGA 1524
||||||||||||||||||||||||
Sbjct 1320 ATTTCAACAAAGTCATTACCTCTGA 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70124141045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5