BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13030.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497092 jgi|Araly1|497092|fgenesh2_kg.9__57__AT4G13030.1 2093 0.0
> Ahg497092 jgi|Araly1|497092|fgenesh2_kg.9__57__AT4G13030.1
Length=1594
Score = 2093 bits (1133), Expect = 0.0
Identities = 1463/1619 (90%), Gaps = 36/1619 (2%)
Strand=Plus/Plus
Query 59 AAAACGAAGAACAAGTAAG-AAGCTTGTAGCCATGGGTGGTGATACTTTCAAAGATGATG 117
|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACGAAGAACAAATAAGAAACCTTGTAGCCATGGGTGGTGATACTTTCAAAGATGATT 60
Query 118 TTGTAGATGAAGAATCTTCAAGATCATCATCATCATCTCCTTGTTCTTGTTGTTTCAGTG 177
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 61 TTGTAGATGAAGAATCTTCAAG---ATCATCATCATCTCCTTGTTTTTGTTGTTTCAGTG 117
Query 178 ATGATTTAGGGTTTAAGGATGATGTTTCTGAAGAGAATTTCACCAATTTCTCTAATCATG 237
|||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 118 ATGATTCAGGGTTTAAGGATGATGTTTCTGAAGATAATTTCGCAAATTTCTCTAATCATG 177
Query 238 TTACTGATTTGAGAAGGAGAGAAAAAGCTTACCAAGAGATTCTTCAAAGTCATGATCTTT 297
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 TTACTGATTTGAGAAGAAGAGAAAAATCTTACCAAGAGATTCTTCAAAGTCATGATCTTT 237
Query 298 TGCTTAGAACCAGCAAACGGAAACTTAGACAAGCCAGAAATGAGATTTTGAGCTATACTC 357
|||| | || ||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 238 TGCTCAAAAGCAGCAAACGGAAACTTAGACAAGCCAGAAATGAAATTTTGAGATATACTC 297
Query 358 CTGGATCATGGTCTGATGTCAAGTTGAGTGATTACAATATTCCAAAAACGACATCGATCA 417
||||||||||||||||||| || |||| |||||| || ||||||| |||||||||||||
Sbjct 298 CTGGATCATGGTCTGATGTGAAACTGAGCGATTACGATGTTCCAAAGACGACATCGATCA 357
Query 418 TGCTAGTTGGTCCGAAAGGGGCTGGGAAGAGTAGCCTTGTTAATAAGATTACAAGAGTGA 477
|| |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 358 TGTTAGTTGGTCCGAAAGGAGCCGGGAAGAGTAGCCTTGTTAATAAGATTTCAAGAGTGA 417
Query 478 TCGAAGACGACGCGTTTCTCCTAGATAGAGCTCAAGAATCATTTGGTACCCCGTCTAAAG 537
| |||||||||| |||| ||| || |||||||||||||||||||||||| | ||||||||
Sbjct 418 TTGAAGACGACGAGTTTTTCCCAGCTAGAGCTCAAGAATCATTTGGTACGCAGTCTAAAG 477
Query 538 GAGGAACATACTTTGTTCAGGAGTATATGATCTCGAGAGGAGGTTCCGCTTCATTTTGCC 597
||||||||| |||||||||||| ||||||||| | ||||||||||| ||||| |||||||
Sbjct 478 GAGGAACATTCTTTGTTCAGGAATATATGATCCCAAGAGGAGGTTCTGCTTCCTTTTGCC 537
Query 598 TATATGATACGCGTGGATTGAGCCGTATATCATCGTCTGATAACACTAGTATGATTGAGC 657
||||||| |||||||| ||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 538 TATATGACACGCGTGGCTTGAGCCATATCTCATCATCTGATAACACTAGTATGATTGAGC 597
Query 658 AATGGATGACAAGGGGCGTGCTTCACGGCGAACCTGTCATCTGGGCATCTGATAGCTCGG 717
| |||||||||| ||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 598 AGTGGATGACAAAAGGCGTGCATCACGGCGAACCTGTCATCTGGACGTCTGATAGCTCGG 657
Query 718 ATTTAAAGGATAGACTCATCCGAGATGGTGGTACCGGTTATGAGAGAAGGAAAGTGAATT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATTTAAAGGATAGACTCATCCGAGATGGTGGTACCGGTTATGAGAGAAGGAAAGTGAATT 717
Query 778 C-GATTATCTTTGTTGTTAATGCGGTCGAAATCTTGAAATCGATGGAATGTGAAACGAGC 836
| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 CCG-TTATCTTTGTTATTAATGCGGTCGAAATCTTGAAATCGATGGAATGTGAAACAAGC 776
Query 837 TATGCTTCG-ATGATAACCACGGCCTTTAACTCTCCGATACTATTGTTTAAAGATGATAA 895
|||||| | |||||| ||||||||||||||| |||| |||| | ||||||||||| ||
Sbjct 777 TATGCT-CATATGATATCCACGGCCTTTAACTGTCCGTTACTGTCATTTAAAGATGACAA 835
Query 896 GCCAGCAGTCGTTATGACTCATGGAGATATGCTTTCACGCGAGGAACGTGCCCGAGTACG 955
||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 836 GCCAGCAGTAGTTATGACTCATGGAGATATGCTTTCACTAGAGGACCGTGCTCGAGTTCG 895
Query 956 AGTTTTCCTTGGAGAACTTCTCGGTATCCCTCCTCACAAACAGATATTTGACATTCCAGA 1015
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct 896 AGTTTTCCTTGGAGAACTTCTCGGTATCCCACCTGACAAACAGATATTCGACATTCCAGA 955
Query 1016 AAGCCGGGACACAGCCACCGCGATAACAATCTGCAACTTGCTATGCTATAGTCTTCAACA 1075
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 956 AAGCCGGGACATAGCCACCGCGCTAACAATCTGCAACTTGCTATGCTATAGTCTTGACCA 1015
Query 1076 TGCTGATAAGAATTTTGTGTTTCTTCCCAAAAAGAACTTCACTATATCCAAGGTGGGAGG 1135
|||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||
Sbjct 1016 TGCTGATAAGAATTTTGTGTTTCTTCCCAAAAGGAACTTCACCATATCAAAGGTTGGAGG 1075
Query 1136 AGGAGGCCTCACAAAATGGATCAGCTTATTAGACATAATATCAATTGCTCTGGTTTTATT 1195
||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 1076 AGGAGGCCTCACAAAATGGATCATCTTATTAGACATAATATCAATTGGTCTGATTTTATT 1135
Query 1196 CATGGCATTGGCGTCAATCTGGTTTGTTACTCATAATCCCGTAAGCGGCCAAAAATTAGC 1255
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1136 CATGGCATTGGCTTCAATCTGGGTTGTTACTCATAATCCCGTAAGCGGCCAAAAATTAGC 1195
Query 1256 TAATGAGACTCAGCAAAAACTGCTTAAATTCCCAAGTCCATGGTTAAATAACCTCACACA 1315
||||| || |||| |||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct 1196 CCATGAGGCTGAGCACAAACTGCTTACATTCCCAAGTCCACGGTTAAACAACCTCACACA 1255
Query 1316 TAAGGCAAAGCCGATGCGTCGCTTTGGGCCTAAGCGGATCATTAAAGGTCCAAACCTTGC 1375
| |||| ||||||| |||||| | |||||| ||||| ||||| |||||||| ||||||
Sbjct 1256 TGAGGCCCAGCCGATACGTCGCATAGGGCCTCAGCGGGTCATTGGAGGTCCAATCCTTGC 1315
Query 1376 ATGCGTTCAACATCCTAAGTCTGAGTTTGTGCCTGAAAGTGAGCCAATAAGCATTGATTT 1435
|||||||||||||||||||||||||| ||||||||| ||||||| | || ||||||||||
Sbjct 1316 ATGCGTTCAACATCCTAAGTCTGAGTCTGTGCCTGATAGTGAGC-A-TA-GCATTGATTT 1372
Query 1436 GCATATAGCTCGACGCTTATGGTTCAACGAAGAGCAA-GTGGCCGAGGCCGAACCAAGCT 1494
||| ||||| | ||||||||||||| |||||| | || ||| |||||| |||||||||||
Sbjct 1373 GCAAATAGCGCAACGCTTATGGTTCGACGAAG-GTAAAGTGACCGAGGTCGAACCAAGCT 1431
Query 1495 TTGATTGGCGAACTACTCGACGCTTGTGGTATGTTGAGTGAAA-TGTATGTGAGCGTCAG 1553
|||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||||||| |
Sbjct 1432 TTGACTGGCGAACAACTCGACGCTTGTGGTACGTTGAATGAAAATGTATGTGAGCGTTAA 1491
Query 1554 CATCTTTAATTATAAGCTTAAATAAGTTTGATAGTGTTTAAACTAGTAATATAAAACAAG 1613
||||||||| | | || | || || | | | | |||||||||||||||||||||
Sbjct 1492 CATCTTTAA--A---GTTTGA-TA-GT--G-T-G-G---AAACTAGTAATATAAAACAAG 1536
Query 1614 GT-----GTTTCTTAAAAAATCTGTTAGGTCATGGTGt-ttttttttGTTTTAATTAAA 1666
| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1537 TTCTTTTGTTTCTTAAAAAATCTGTTTGGTCATGGTGTCTTTTTTTT-TTTTAATTAAA 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5