BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13050.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333029 jgi|Araly1|333029|fgenesh1_pm.C_scaffold_9000057 1779 0.0
Ahg480016 jgi|Araly1|480016|fgenesh2_kg.3__2717__AT3G25110.1 813 0.0
> Ahg333029 jgi|Araly1|333029|fgenesh1_pm.C_scaffold_9000057
Length=1104
Score = 1779 bits (963), Expect = 0.0
Identities = 1058/1105 (96%), Gaps = 2/1105 (0%)
Strand=Plus/Plus
Query 179 ATGTTGAAGCTTTCGTGTAATGTAACTGACCATATACACAACCTTTTCTCCAACTCTCGC 238
|||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||
Sbjct 1 ATGTTGAAGCTTTCGTGTAATGTAACTGACCACGTACACAACTTTTTCTCCGATTCTCGC 60
Query 239 CGGATTTTTGTTCCGGTGCATCGGCAAACCAGACCCATCTCTTGTTTTCAGTTAAAGAAG 298
||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 61 CGGATTTTTGTTCCGGTGCATCGCCGTACCGGACCCATCTCTTGTTTTCAGTTAAAGAAG 120
Query 299 GAACCTTTACGGGCAATTCTCTCTGCTGATCATGGAAACAGCAGCGTCCGTGTTGCTGAT 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GAACCTTTACGGGCAATTCTCTCTGCTGATCATGGAAACAGCAGCCTCCGTGTTGCTGAT 180
Query 359 ACTGTTTCCGGTACTTCTCCGGCGGATCGTCTCCGGTTTGGTCGATTGATGGAAGATGGG 418
||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 181 TCTGTTTCCGTTACTTCTCCGGCGGATCGTCTCCGATTTGGTCGATTGATGGCAGATGGG 240
Query 419 TTTTCTTATAAGGAGAAGTTCATTGTTAGAAGCTATGAAGTTGGGATTAACAAAACTGCC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTCTTATAAGGAGAAGTTCATTGTTAGAAGCTATGAAGTTGGGATTAACAAAACTGCC 300
Query 479 ACCATTGAAACAATTGCTAATCTCTTGCAGGAAGTGGCATGTAATCATGTTCAGAATGTT 538
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 301 ACTGTTGAAACAATTGCTAATCTTTTGCAGGAAGTGGCATGTAATCATGTTCAGAAAGTT 360
Query 539 GGATTTTCTACTGATGGATTTGCTACAACACTTACCATGAGGAAATTGCATCTTATTTGG 598
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 361 GGATTTTCGACTGATGGGTTTGCTACAACACTTACTATGAGGAAATTGCATCTCATTTGG 420
Query 599 GTTACTGCAAGAATGCACATTGAGATTTACAAGTATCCAGCTTGGAGTGATGTGGTTGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTACTGCAAGAATGCACATTGAGATTTACAAGTATCCAGCTTGGAGTGATGTGGTTGAG 480
Query 659 ATTGAGACTTGGTGTCAGAGTGAAGGAAGGATTGGAACTAGACGTGATTGGATTTT-AAA 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 ATTGAGACTTGGTGTCAGAGTGAAGGAAGGATTGGAACTAGACGTGATTGGATTTTGAAA 540
Query 718 GGATTGTGCTACTGGTGAAGTTATTGGACGTGCTACAAGCAAGTGGGTGATGATGAACCA 777
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 G-ATTGTGCGACCGGTGAAGTTATTGGACGTGCTACAAGCAAGTGGGTGATGATGAACCA 599
Query 778 AGACACAAGGCGGCTTCAAAGGGTTACAGACGAAGTTCGGGACGAGTACTTGGTTTTCTG 837
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 600 AGACACAAGGCGGCTTCAAAGAGTTACAGATGAAGTTCGGGACGAGTATTTGGTTTTCTG 659
Query 838 TCCTCCAGAGCCTAGACTAGCGTTTCCAGAGGAGAACAATAGCAGCTTAAAGAAAATCCC 897
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 660 TCCTCGAGAGCCTAGACTAGCGTTTCCAGAGGAGAACAATAACAGCTTAAAGAAGATCCC 719
Query 898 GAAATTGGAAGATCCTGCTCAGTATTCTATGCTTGGGCTTAAGCCTAGACGAGCTGATCT 957
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 GAAACTGGAAGATCCTGCTCAGTATTCTATGCTAGGGCTTAAGCCTAGACGAGCTGATCT 779
Query 958 TGACATGAACCAACATGTGAATAATGTTACCTACATTGGATGGGTCCTTGAGAGCATACC 1017
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 AGACATGAACCAGCATGTGAATAATGTCACCTACATTGGATGGGTCCTTGAGAGCATACC 839
Query 1018 GCAAGAAATCATAGACACGCACGAGCTTAAAGTTATAACTCTAGATTACAGAAGAGAATG 1077
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCAAGAAGTCATAGACACGCACGAGCTTAAAGTTATAACTCTAGATTACAGAAGAGAATG 899
Query 1078 CCAGCAAGATGACATTGTAGATTCACTTACCACCTCTGAAACCCCCAATGAGGTGGTCTC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 900 CCAGCAAGATGACATTGTAGATTCACTTACCACCTCTGAAACCCCCAATGAGGCGGTGTC 959
Query 1138 AAAGCTTACTGGGACGAACGGATCTACCACGTCAAGCAAACGAGAACACAATGAGAGTCA 1197
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 960 AAAGCTTACTGGGACCAACGGATCTACCACGTCAAGCAAACAAGAACACAATGAGAGCCA 1019
Query 1198 CTTCTTGCATATCCTGAGGTTGTCAGAAAATGGTCAGGAGATCAATCGTGGGAGAACCCA 1257
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 ATTCTTGCATATCTTGAGGTTGTCAGAAAATGGACAGGAGATCAATCGTGGGAGAACCCA 1079
Query 1258 ATGGCGAAAGAAGTCATCAAGATGA 1282
||||||||||||||| |||||||||
Sbjct 1080 ATGGCGAAAGAAGTCCTCAAGATGA 1104
> Ahg480016 jgi|Araly1|480016|fgenesh2_kg.3__2717__AT3G25110.1
Length=1434
Score = 813 bits (440), Expect = 0.0
Identities = 655/758 (86%), Gaps = 17/758 (2%)
Strand=Plus/Plus
Query 368 GGTACTTCTCCGGCGGATC-GTCTCCGGTTTGGTCGATTGATGGAAGATGGGTTT-TCTT 425
||||| ||| | ||||||| | ||||| || ||| | |||| ||||||| ||||| || |
Sbjct 247 GGTAC-TCT-C-GCGGATCAG-CTCCGATTAGGTAGTTTGACGGAAGAT-GGTTTATCGT 301
Query 426 ATAAGGAGAAGTTCATTGTTAGAAGC-TATGAAGTTGGGATTAACAAAACTGCCACCATT 484
|||| |||||||| ||||||| | | || ||||| || | ||||||||| || ||||||
Sbjct 302 ATAAAGAGAAGTTTGTTGTTAG-ATCTTACGAAGTCGGTAGTAACAAAACCGCTACCATT 360
Query 485 GAAACAATTGCTAATCTCTTGCAGGAAGTGGCATGTAATCATGTTCAGAA-TGTTGGATT 543
||||| ||||||||||| || ||||| |||| ||||||||||| || || |||||||||
Sbjct 361 GAAACCATTGCTAATCTTTTACAGGAGGTGGGATGTAATCATGCACA-AAGTGTTGGATT 419
Query 544 TTCTACTGATGGATTTGCTACAACACTTACCATGAGGAAATTGCATCTTATTTGGGTTAC 603
||| |||||||||||||| ||||||| || ||||||||||||||||| |||||||||||
Sbjct 420 TTCGACTGATGGATTTGCAACAACACCAACTATGAGGAAATTGCATCTCATTTGGGTTAC 479
Query 604 TGCAAGAATGCACATTGAGATTTACAAGTATCCAGCTTGGAGTGATGTGGTTGAGATTGA 663
||||||||||||||||||||| ||||| || || |||||| |||||||||||||||| ||
Sbjct 480 TGCAAGAATGCACATTGAGATCTACAAATACCCTGCTTGGGGTGATGTGGTTGAGATAGA 539
Query 664 GACTTGGTGTCAGAGTGAAGGAAGGATTGGAACTAGACGTGATTGGATT-TTAAAGGATT 722
||| |||||||||||||||||||||||||| || || |||||||||||| || |||||||
Sbjct 540 GACATGGTGTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGGATTCTT-AAGGATT 598
Query 723 GTGCT-ACTGGTGAAGTTATTGGACGTGCTACAAGCAAGTGGGTGATGATGAACCAAGAC 781
||| | ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 GTG-TCACTGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATGATGAACCAAGAC 657
Query 782 ACAAGGCGGCTTCA-AAGGGTTACAGACGAAGTTCGGGACGAGTACTTGGTTTTCTGTCC 840
||||| |||||||| || | || | || || |||||||||||||||||||| ||||||||
Sbjct 658 ACAAGACGGCTTCAGAAAGTTT-CTGATGATGTTCGGGACGAGTACTTGGTCTTCTGTCC 716
Query 841 TCCAGAGCCTAGACTAGCGTTTCCAGAGGAGAACAATAGCAGCTTAAAGAAAATCCCGAA 900
|| ||| || ||| |||| ||||| || ||||| || || ||||| ||||||||||||||
Sbjct 717 TCAAGAACCGAGATTAGCATTTCCGGAAGAGAATAACAGAAGCTTGAAGAAAATCCCGAA 776
Query 901 ATTGGAAGATCCTGCTCAGTATTCTATGCTTGGGCTTAAGCCTAGACGAGCTGATCTTGA 960
| | |||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 777 ACTCGAAGATCCGGCTCAGTATTCGATGATTGGGCTTAAGCCTAGACGAGCTGATCTCGA 836
Query 961 CATGAACCAACATGTGAATAATGTTACCTACATTGGATGGGTCCTTGAGAGCATACCGCA 1020
||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||
Sbjct 837 CATGAACCAGCATGTGAATAATGTCACCTATATTGGATGGGTTCTCGAGAGCATACCGCA 896
Query 1021 AGAAATCATAGACACGCACGAGCTTAAAGTTATAACTCTAGATTACAGAAGAGAATGCCA 1080
|||||| ||||||||||||||||| | || |||||||| ||||||||||||||||| ||
Sbjct 897 AGAAATTGTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTACAGAAGAGAATGTCA 956
Query 1081 GCAAGATGACATTGTAGATTCACTTACCACCTCTGAAA 1118
||||| || | || |||||||| |||||||| ||||
Sbjct 957 ACAAGACGATGTGGTGGATTCACTCACCACCTCGGAAA 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5