BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13060.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333028 jgi|Araly1|333028|fgenesh1_pm.C_scaffold_9000056 1037 0.0
Ahg333380 jgi|Araly1|333380|fgenesh1_pm.C_scaffold_678000001 435 4e-121
> Ahg333028 jgi|Araly1|333028|fgenesh1_pm.C_scaffold_9000056
Length=1020
Score = 1037 bits (561), Expect = 0.0
Identities = 883/1031 (86%), Gaps = 51/1031 (5%)
Strand=Plus/Plus
Query 1 ATGGCCAAGGATGATCAGCATAAGCAAGTC-T-TG-------TACATGTTGTCATTTCAT 51
|||||||||||||||||||| ||||||||| | || | ||| ||||||||||||
Sbjct 1 ATGGCCAAGGATGATCAGCAGAAGCAAGTCTTCTGCATCTTCTGCATATTGTCATTTCAT 60
Query 52 GAGAACTTTA-AAAGTTATTCTGATGTGAACAATTTTCATAACATGCCCCCTACAGAAGA 110
||||||| || || |||||||||||||||| ||||||||| ||||| ||||||| ||||
Sbjct 61 GAGAACTCTACGAA-TTATTCTGATGTGAACCATTTTCATATCATGCACCCTACAAAAGA 119
Query 111 TTGCCATTACTACAACTATAGTGCTTCTGTCAATGGTTTGGTCACTTTCAGGAA-C-AAT 168
||| || ||| || |||||| ||||||||||||||| ||||||||||||| || | ||
Sbjct 120 TTGTCAATACGACTACTATAATGCTTCTGTCAATGGCTTGGTCACTTTCA-AAACCGAA- 177
Query 169 ACAGAG-ATTGTAATCTGGAACCCCACCATGAAAGAACATATAACCTTGCTTCAACCTAA 227
|| | | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 178 AC-GGGTATTGTAATCTGGAACCCTACCATAAAAGAACATATAACCTTGCCTCAACCTAA 236
Query 228 AATCTCTAAGCCCCTAAAAAT-CTATTTAGGATATGATCCTAAGGAGAATACATATAAAC 286
||||||||||| | | || || | |||||||||||| |||||||| ||||||||||||
Sbjct 237 AATCTCTAAGCACGT-AAGATGTTTTTTAGGATATGACCCTAAGGAAAATACATATAAAA 295
Query 287 TTCTATCGGTGGCAAATTTAAATACG-CTATGGGACGACTATCAAAAGCCTCATATTCTT 345
| |||||| | | |||| || | | |||||| | |||||||| | | | ||||||
Sbjct 296 TACTATCGATTG---ATTTTTGTAAGAC-ATGGGAAAAATATCAAAAACATAAGATTCTT 351
Query 346 ACATTAGGATCTCAAGAATCATGGAGGGTGATAAAAAACAGCCCTGATCATAAACCTACA 405
|||||||||||||||||||||||||||||||||| ||| |||||||||||| | |||| |
Sbjct 352 ACATTAGGATCTCAAGAATCATGGAGGGTGATAACAAATAGCCCTGATCATTATCCTAGA 411
Query 406 AGTAGGTATTATTGCATCAACGGAGTTGTGTACTATA-ATGCATATATATCAT-CTGAAG 463
|| ||||||||||||||||||||||||| ||||||| | ||||||||| | | | ||||
Sbjct 412 CGTGGGTATTATTGCATCAACGGAGTTGTTTACTATAGA-GCATATATAACCTAC-GAAG 469
Query 464 AACATCGACGTGGCCATAACACTGT-CCCTGCGTTTACCAAAGAATTCGAGCTAGG-TGT 521
| || | | ||||| | | | |||| |||||| ||||||| ||||||| || | |
Sbjct 470 -A-AT--A--T---CATAA-AATTTACCCTCCGTTTATCAAAGAAATCGAGCT-GGATAT 518
Query 522 GAGAGTGAAGC-ATATTATTATGAGTTTTGATGTGAGGTCTGAAAAGTTCAAATCAATTC 580
|||| |||| | | || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 519 GAGATTGAA-CGAGATCATTATGAGTTTTGATGTGAGGTCTGAACAGTTCAAATCAATTG 577
Query 581 AAATACCTAG-TAGTGGGCACCAATATGAACT-AATGTGTT-ATAAATCTCTAATGAGTT 637
|| ||||| | | ||| | ||||||||||| | || | || || ||||||| |||| ||
Sbjct 578 AATTACCT-GCTCGTGCGAACCAATATGAA-TCAAAG-CTTGATGAATCTCTGATGACTT 634
Query 638 ACAAAGGAAAATTAGCATGGGTTTGCTGTAATTCAAATATTATCAAATTATGGGTTTTGT 697
|| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 635 ACCAAGGAAAATTAGCATGGGTTTGCTATAATTCAAATATGATCAAATTATGGGTTTTGC 694
Query 698 TGGATGC-TGGAAAACAAGAATGGTCAGAAAATGAATTTGTTTTACCTAGTTTGCCTCAA 756
||| | || |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 695 AAGAT-CTTGAAAAACAAGAATGGTCAAAAAATGAATTTGTTTTACCTAATTTGCCTCAA 753
Query 757 AGAGATTTGCTTGGGAGTGCTAGGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTAT 816
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 754 AGAGATTTGCTTGGGAGTGCTAAGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTAT 813
Query 817 GTATCGGGAAAACATTTCAAAGACATTTCGGCTTTTTATTACGATCCCGTGAGAAAGACT 876
|||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct 814 GTATCGGGAAAATATTTCAAAGACATTTCGGTTTTTTATTACGATCCGGTGAGAGAGACT 873
Query 877 ATCACAAGTGTCAAAGGACTTTATTATGAGGAATTTAGGTGTTGTTATGGATTTAGTAAC 936
|||||||||||||| |||||| | |||||| ||||||||| |||||||||| || ||||
Sbjct 874 ATCACAAGTGTCAATGGACTTGAATATGAGAAATTTAGGTCCTGTTATGGATCTAATAAC 933
Query 937 GATGAGATGGCTTGTCTTCGATCTTATCCGAATCATATTGAAAGTCTCATGTCTCTTAGG 996
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||
Sbjct 934 GATGAGATGGCTTGTCTCCGATCTTATCCGAATCATATTGAAAATCTCATGTCTCTAAGG 993
Query 997 AACATCATGTG 1007
|||||||||||
Sbjct 994 AACATCATGTG 1004
> Ahg333380 jgi|Araly1|333380|fgenesh1_pm.C_scaffold_678000001
Length=972
Score = 435 bits (235), Expect = 4e-121
Identities = 355/412 (86%), Gaps = 11/412 (3%)
Strand=Plus/Plus
Query 521 TGAGAGTGAAGCATATTATTATGAGTTTTGATGTGAGGTCTGAAAAGTTCAAATCAATTC 580
||||| ||||| | || ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 467 TGAGATTGAAGGAGATCATTATGAGTTTTGATGTGAGGTCTGAACAGTTCAAATCAATCC 526
Query 581 AAATACCTAGTAGTGGGCACCAATATGAACT-AATGTGTT-ATA-AATCTCTAATGAGTT 637
|||||||| || || |||||||| | | ||| || | | ||||||||||| |||
Sbjct 527 AAATACCTGGTCGTAAATTCCAATATG-AGTCGATG-CTTGA-AGAATCTCTAATGTGTT 583
Query 638 ACAAAGGAAAATTAGCATGGGTTTGCTGTAATTCAAATATTATCAAATTATGGGTTTTGT 697
|| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 584 ACCAAGGAAAAGTAGCATGGATTTGCTATAATTCAAATATTATCAAATTATGGGTTTTGA 643
Query 698 TGGATGCTGGAAAACAAGAATGGTCAGAAAATGAATTTGTTTTACCTAGTTTGCCTCAAA 757
|||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 644 AGGATGCTGAAAAACAAGTATGGTCAGAAAATGAATTTGTTTTACC---TTTGCCTCAAA 700
Query 758 GAGATTTGCTTGGGAGTGCTAGGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTATG 817
||||||||| | ||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 701 GAGATTTGCCTCGGAATGCTTGGTTACGTGGTGCCACTAGTACTGGTGAGTTTATCTATG 760
Query 818 TATCGGGAAA-ACATTTCAAAGACATTTCGGCTTTTTATTACGATCCCGTGAGAAAGACT 876
|||||||||| || |||| | ||||| ||||||||||| ||||| |||||| |||||
Sbjct 761 TATCGGGAAATACCCC-CAAAAATATTTCTGCTTTTTATTATGATCCGGTGAGAGAGACT 819
Query 877 ATCACAAGTGTCAAAGGACTTTATTATGAGGAATTTAGGTGTTGTTATGGAT 928
|||| ||||||||||||| || | ||||| |||||||| ||||||||||||
Sbjct 820 ATCAGAAGTGTCAAAGGAATTGAAAATGAGAAATTTAGGCGTTGTTATGGAT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5