BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13060.1 Length=1008 Score E Sequences producing significant alignments: (Bits) Value Ahg333028 jgi|Araly1|333028|fgenesh1_pm.C_scaffold_9000056 1037 0.0 Ahg333380 jgi|Araly1|333380|fgenesh1_pm.C_scaffold_678000001 435 4e-121 > Ahg333028 jgi|Araly1|333028|fgenesh1_pm.C_scaffold_9000056 Length=1020 Score = 1037 bits (561), Expect = 0.0 Identities = 883/1031 (86%), Gaps = 51/1031 (5%) Strand=Plus/Plus Query 1 ATGGCCAAGGATGATCAGCATAAGCAAGTC-T-TG-------TACATGTTGTCATTTCAT 51 |||||||||||||||||||| ||||||||| | || | ||| |||||||||||| Sbjct 1 ATGGCCAAGGATGATCAGCAGAAGCAAGTCTTCTGCATCTTCTGCATATTGTCATTTCAT 60 Query 52 GAGAACTTTA-AAAGTTATTCTGATGTGAACAATTTTCATAACATGCCCCCTACAGAAGA 110 ||||||| || || |||||||||||||||| ||||||||| ||||| ||||||| |||| Sbjct 61 GAGAACTCTACGAA-TTATTCTGATGTGAACCATTTTCATATCATGCACCCTACAAAAGA 119 Query 111 TTGCCATTACTACAACTATAGTGCTTCTGTCAATGGTTTGGTCACTTTCAGGAA-C-AAT 168 ||| || ||| || |||||| ||||||||||||||| ||||||||||||| || | || Sbjct 120 TTGTCAATACGACTACTATAATGCTTCTGTCAATGGCTTGGTCACTTTCA-AAACCGAA- 177 Query 169 ACAGAG-ATTGTAATCTGGAACCCCACCATGAAAGAACATATAACCTTGCTTCAACCTAA 227 || | | ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| Sbjct 178 AC-GGGTATTGTAATCTGGAACCCTACCATAAAAGAACATATAACCTTGCCTCAACCTAA 236 Query 228 AATCTCTAAGCCCCTAAAAAT-CTATTTAGGATATGATCCTAAGGAGAATACATATAAAC 286 ||||||||||| | | || || | |||||||||||| |||||||| |||||||||||| Sbjct 237 AATCTCTAAGCACGT-AAGATGTTTTTTAGGATATGACCCTAAGGAAAATACATATAAAA 295 Query 287 TTCTATCGGTGGCAAATTTAAATACG-CTATGGGACGACTATCAAAAGCCTCATATTCTT 345 | |||||| | | |||| || | | |||||| | |||||||| | | | |||||| Sbjct 296 TACTATCGATTG---ATTTTTGTAAGAC-ATGGGAAAAATATCAAAAACATAAGATTCTT 351 Query 346 ACATTAGGATCTCAAGAATCATGGAGGGTGATAAAAAACAGCCCTGATCATAAACCTACA 405 |||||||||||||||||||||||||||||||||| ||| |||||||||||| | |||| | Sbjct 352 ACATTAGGATCTCAAGAATCATGGAGGGTGATAACAAATAGCCCTGATCATTATCCTAGA 411 Query 406 AGTAGGTATTATTGCATCAACGGAGTTGTGTACTATA-ATGCATATATATCAT-CTGAAG 463 || ||||||||||||||||||||||||| ||||||| | ||||||||| | | | |||| Sbjct 412 CGTGGGTATTATTGCATCAACGGAGTTGTTTACTATAGA-GCATATATAACCTAC-GAAG 469 Query 464 AACATCGACGTGGCCATAACACTGT-CCCTGCGTTTACCAAAGAATTCGAGCTAGG-TGT 521 | || | | ||||| | | | |||| |||||| ||||||| ||||||| || | | Sbjct 470 -A-AT--A--T---CATAA-AATTTACCCTCCGTTTATCAAAGAAATCGAGCT-GGATAT 518 Query 522 GAGAGTGAAGC-ATATTATTATGAGTTTTGATGTGAGGTCTGAAAAGTTCAAATCAATTC 580 |||| |||| | | || ||||||||||||||||||||||||||| |||||||||||||| Sbjct 519 GAGATTGAA-CGAGATCATTATGAGTTTTGATGTGAGGTCTGAACAGTTCAAATCAATTG 577 Query 581 AAATACCTAG-TAGTGGGCACCAATATGAACT-AATGTGTT-ATAAATCTCTAATGAGTT 637 || ||||| | | ||| | ||||||||||| | || | || || ||||||| |||| || Sbjct 578 AATTACCT-GCTCGTGCGAACCAATATGAA-TCAAAG-CTTGATGAATCTCTGATGACTT 634 Query 638 ACAAAGGAAAATTAGCATGGGTTTGCTGTAATTCAAATATTATCAAATTATGGGTTTTGT 697 || |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 635 ACCAAGGAAAATTAGCATGGGTTTGCTATAATTCAAATATGATCAAATTATGGGTTTTGC 694 Query 698 TGGATGC-TGGAAAACAAGAATGGTCAGAAAATGAATTTGTTTTACCTAGTTTGCCTCAA 756 ||| | || |||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 695 AAGAT-CTTGAAAAACAAGAATGGTCAAAAAATGAATTTGTTTTACCTAATTTGCCTCAA 753 Query 757 AGAGATTTGCTTGGGAGTGCTAGGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTAT 816 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 754 AGAGATTTGCTTGGGAGTGCTAAGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTAT 813 Query 817 GTATCGGGAAAACATTTCAAAGACATTTCGGCTTTTTATTACGATCCCGTGAGAAAGACT 876 |||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||| Sbjct 814 GTATCGGGAAAATATTTCAAAGACATTTCGGTTTTTTATTACGATCCGGTGAGAGAGACT 873 Query 877 ATCACAAGTGTCAAAGGACTTTATTATGAGGAATTTAGGTGTTGTTATGGATTTAGTAAC 936 |||||||||||||| |||||| | |||||| ||||||||| |||||||||| || |||| Sbjct 874 ATCACAAGTGTCAATGGACTTGAATATGAGAAATTTAGGTCCTGTTATGGATCTAATAAC 933 Query 937 GATGAGATGGCTTGTCTTCGATCTTATCCGAATCATATTGAAAGTCTCATGTCTCTTAGG 996 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| Sbjct 934 GATGAGATGGCTTGTCTCCGATCTTATCCGAATCATATTGAAAATCTCATGTCTCTAAGG 993 Query 997 AACATCATGTG 1007 ||||||||||| Sbjct 994 AACATCATGTG 1004 > Ahg333380 jgi|Araly1|333380|fgenesh1_pm.C_scaffold_678000001 Length=972 Score = 435 bits (235), Expect = 4e-121 Identities = 355/412 (86%), Gaps = 11/412 (3%) Strand=Plus/Plus Query 521 TGAGAGTGAAGCATATTATTATGAGTTTTGATGTGAGGTCTGAAAAGTTCAAATCAATTC 580 ||||| ||||| | || ||||||||||||||||||||||||||| ||||||||||||| | Sbjct 467 TGAGATTGAAGGAGATCATTATGAGTTTTGATGTGAGGTCTGAACAGTTCAAATCAATCC 526 Query 581 AAATACCTAGTAGTGGGCACCAATATGAACT-AATGTGTT-ATA-AATCTCTAATGAGTT 637 |||||||| || || |||||||| | | ||| || | | ||||||||||| ||| Sbjct 527 AAATACCTGGTCGTAAATTCCAATATG-AGTCGATG-CTTGA-AGAATCTCTAATGTGTT 583 Query 638 ACAAAGGAAAATTAGCATGGGTTTGCTGTAATTCAAATATTATCAAATTATGGGTTTTGT 697 || |||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 584 ACCAAGGAAAAGTAGCATGGATTTGCTATAATTCAAATATTATCAAATTATGGGTTTTGA 643 Query 698 TGGATGCTGGAAAACAAGAATGGTCAGAAAATGAATTTGTTTTACCTAGTTTGCCTCAAA 757 |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 644 AGGATGCTGAAAAACAAGTATGGTCAGAAAATGAATTTGTTTTACC---TTTGCCTCAAA 700 Query 758 GAGATTTGCTTGGGAGTGCTAGGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTATG 817 ||||||||| | ||| |||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 701 GAGATTTGCCTCGGAATGCTTGGTTACGTGGTGCCACTAGTACTGGTGAGTTTATCTATG 760 Query 818 TATCGGGAAA-ACATTTCAAAGACATTTCGGCTTTTTATTACGATCCCGTGAGAAAGACT 876 |||||||||| || |||| | ||||| ||||||||||| ||||| |||||| ||||| Sbjct 761 TATCGGGAAATACCCC-CAAAAATATTTCTGCTTTTTATTATGATCCGGTGAGAGAGACT 819 Query 877 ATCACAAGTGTCAAAGGACTTTATTATGAGGAATTTAGGTGTTGTTATGGAT 928 |||| ||||||||||||| || | ||||| |||||||| |||||||||||| Sbjct 820 ATCAGAAGTGTCAAAGGAATTGAAAATGAGAAATTTAGGCGTTGTTATGGAT 871 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37474827411 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5