BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13070.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915141 jgi|Araly1|915141|Al_scaffold_0009_110 1613 0.0
> Ahg915141 jgi|Araly1|915141|Al_scaffold_0009_110
Length=1032
Score = 1613 bits (873), Expect = 0.0
Identities = 981/1034 (95%), Gaps = 4/1034 (0%)
Strand=Plus/Plus
Query 310 ATGTTAGCTTTAGGTTATGCC-AAGGAAATCGCTCAAAGATTTCTCAGAAATCCAAAATG 368
||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||
Sbjct 1 ATGTTAGCTTTAGGTTATGCCAAAGG-AATCGCTCATCGATTTCTCAGAAATCCCAAATG 59
Query 369 GACCTCTAGATTCTTCTTGCTTCACTATCAATCCTCTAATTACTCCAGTTATGTAAAGTC 428
||||||| || ||||||||| |||| |||| ||| |||||||||||| ||||||||||||
Sbjct 60 GACCTCTGGACTCTTCTTGCATCACAATCAGTCCCCTAATTACTCCATTTATGTAAAGTC 119
Query 429 AAGACCTTTTCTACAAGTTCAATGTAAATCAGCTTCTTTTGATGTTTCACAAGCTCAGAG 488
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AAAACCTTTTCTACAAGTTCCATGTAAATCAGCTTCTTTTGATGTTTTACAAGCTCAGAG 179
Query 489 ATGGAATCTATTTGCGTATGATGGTTTGTTTAGTAGACGTTACTTGAGTAATTCCACAAT 548
| ||||||||||||||||||||||||| |||||||| |||||||| |||||||| || |
Sbjct 180 ACGGAATCTATTTGCGTATGATGGTTTCTTTAGTAGGCGTTACTTAAGTAATTCGACGGT 239
Query 549 AGAGCTAAGAACAGATGATAATGTGGTTAGGTTTGCTTTCAACAATGTCT-CTAGTAGTG 607
||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||
Sbjct 240 AGAGCTAAGAACAGATGATAATGTGGTGAGGTTTGCTTTCAACAATGT-TACTGGTAGTG 298
Query 608 GTAACAATGTTGTACCTACAAGAAAAGAGAAGAAATGGAAACGGGCTAAATTGTCAAGAA 667
||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 299 GTAACAATGTTGTGCCTACAAGAAAAGAGAAGAAATGGAAACGGGCTAAAATGTCGCGAA 358
Query 668 AAGCTAAAGTGAATGAGTTAAGGTTTTATCGTCTGAAGGCTAAAAAGAAGATGAATTCTC 727
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 359 AGGCTAAAGTGAATGAGTTAAGGTTTTATCGTCTTAAGGCGAAAAAGAAGATGAATTCTC 418
Query 728 CAAACCCTGAAGTTAGAATTCGTTACAAGCTTGAAAAGGCTAAGAGGAAAGAAGAATGGT 787
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 CAAACCCTGAAGTTAGGATTCGTTACAAGCTTGAAAAGGCCAAGAGGAAAGAAGAATGGT 478
Query 788 TGATTGAGAAACTGAGGAAATACGATGTTCCGAAATCACCAGCGGAGCCTTATGATCCAG 847
|||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 479 TGATTGAGAAACTGAGGAAATACGATGTCCCGAAGTCACCAGCAGAGCCGTATGATCCAG 538
Query 848 AGAGTTTGACAGAGGAAGAGCAGCATTACTTAAAACGTACAGGTGAGAAGAGAAAGAACT 907
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 AAAGTTTGACAGAGGAAGAGCAGCATTACTTAAAACGTACAGGTGAAAAGAGAAAGAACT 598
Query 908 TTGTACTTGTCGGAAGACGAGGAGTGTTTGGAGGTGTGGTTTTGAATTTGCACCTTCATT 967
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 TTGTACTTGTCGGGAGACGAGGAGTGTTTGGAGGTGTGGTTCTGAATTTGCACCTTCATT 658
Query 968 GGAAAAAGCATGAGACTGTTAAAGTTATTTGCAAGCCCTGCAACAAACCCGGGCAGGTTC 1027
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGAAAAAGCATGAAACTGTTAAAGTTATTTGCAAGCCCTGCAACAAACCCGGGCAGGTTC 718
Query 1028 ATGAGTATGCAGAAGAGCTTGCTCGGTTAAGTAAGGGCATTGTGATTGATGTCAAACCTA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATGAGTATGCAGAAGAGCTTGCTCGGTTAAGTAAGGGCATTGTGATTGATGTCAAACCTA 778
Query 1088 ACAACACCATTGTGTTGTACCGTGGGAAAAACTATGTGAGACCAGAAGTGATGTCTCCTG 1147
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACAACACCATAGTATTGTACCGTGGGAAAAACTATGTGAGACCAGAAGTGATGTCTCCTG 838
Query 1148 TTGATACTCTCTCTAAAGATAAGGCTTTGGAGAAATATCGGTATGAGCAATCGCTTGAAC 1207
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGATACCCTCTCTAAAGATAAGGCTTTGGAGAAATATCGGTATGAGCAATCGCTTGAAC 898
Query 1208 ATACGAGTGAGTTCATAGAGAAGCTGGAGAAGGAGCTTGAGGAGTACCATAAGTACGTTG 1267
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 899 ATACGAGTGAGTTCATAGAGAAGCTGGAGAAAGAACTTGAGGAGTACCAGAAGTACGTTG 958
Query 1268 CTCGGCACaagaagaagaaagatgaagaagcagagaagaagaaagaGGCGGTTTCGAAGA 1327
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 959 CTCGGCACAAGAAGAAGAAAGATGAAGAAGCAGAGAAGAAGAAAGAGGCAGATTCCAAGA 1018
Query 1328 GCAAAGTAGTGTAA 1341
||||||||||||||
Sbjct 1019 GCAAAGTAGTGTAA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5