BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13075.1

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497089 jgi|Araly1|497089|fgenesh2_kg.9__54__AT4G13075.1           418    2e-116


> Ahg497089 jgi|Araly1|497089|fgenesh2_kg.9__54__AT4G13075.1
Length=363

 Score =  418 bits (226),  Expect = 2e-116
 Identities = 305/341 (89%), Gaps = 14/341 (4%)
 Strand=Plus/Plus

Query  1    TTGTTAAGAATTCCTCACTTTGTCGTTTTCAGAATCATATAAATTATAGAAGGGAATaaa  60
            ||||||| |||||||| ||||||||||||||||||||||| ||  | | ||  |      
Sbjct  1    TTGTTAATAATTCCTCGCTTTGTCGTTTTCAGAATCATAT-AA--A-A-AA--G------  47

Query  61   aaaaaaCATCAAGTCAAAATGAAGGCTTGGGTCATATGTTTGATGGTAATAAGCATTTTC  120
             ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct  48   -AAAAACATCAAGTCAAAATGAAGGCTTGGGGGATATGTTTGATGGTAATAAGCATTTTC  106

Query  121  ATGATGATTGAGCCAACACTAGCTGCTGGTGGGGGTAAATTTTTAAATCCAGGAGTGCTT  180
            |||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  107  ATGATGATGGAGCCAACGCTAGCTGCTGGTGTGGGTAAATTTTTAAATCCAGGGGTGCTT  166

Query  181  GATCCGTGTTTGCGTCCTAATCCTCCACCAGAGTGTCAAGCCCCAGGATCAGCTGGGAAA  240
            ||||||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||
Sbjct  167  GATCCGTGTTTGCGTCCTAATCCACCAGCAGGGTGTCAGGCCCCAGGATCAGCTGGGAAA  226

Query  241  CCTAGAGAGCGAGTTAATGAATATAAAGTTGGATGCTCCAAACTTACCCGGTGCGACCGT  300
            |||| ||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||
Sbjct  227  CCTAAAGAGCGAGTTAATGAGTATAAAGCTGGATGCTCCAAGCTTACCCGGTGCAACCGT  286

Query  301  GTCGGATAATCATTATTTATTTTATTAGTTTTATGAGAAAT  341
            | ||||||||||| |||| ||| |||| |||||||||||||
Sbjct  287  GCCGGATAATCATGATTTCTTTCATTATTTTTATGAGAAAT  327



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18658083021


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5