BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13080.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915129 jgi|Araly1|915129|Al_scaffold_0009_98 1321 0.0
> Ahg915129 jgi|Araly1|915129|Al_scaffold_0009_98
Length=891
Score = 1321 bits (715), Expect = 0.0
Identities = 831/886 (94%), Gaps = 11/886 (1%)
Strand=Plus/Plus
Query 1 ATGGAATATCTTTCAATCTTCGGTTTTGTTTCAGTTTTGTATTTGATCATTAGGGTTGAT 60
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 10 ATGGATTATATTTCAATCTTCGGTTTTGTATCAGTTTTGTATTTGATCATTAGGGTTGAT 69
Query 61 GCTAGGGCTTATGAAGTT-AATGGAATCGACCAAAGCAAAGTAGGTTTCGATGATAACTA 119
||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||| ||
Sbjct 70 GCTAGGGCTCATGAAGTTCAA-GGAATCGACCAAAACAAAGTAGGTTTCGATGATAATTA 128
Query 120 CGTCGTTACGTGGGGACAAAATAATGTCTTGAAACTTAACCAAGGGAAAGAAGTTCAGCT 179
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 129 TGTCGTTACGTGGGGACAAAATAATATCTTGAAACTTAACCAAGGGAAAGAAGTTCAGCT 188
Query 180 TTCATTGGATCATTCTTCAGGTTCTGGTTTTGAATCTAAGAATCATTACGAATCAGGATT 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TTCATTGGATCGTTCTTCAGGTTCTGGTTTTGAATCTAAGAATCATTACGAATCAGGATT 248
Query 240 CTTCCAAATAAGAATCAAAGTGCCTCCAAAAGATACCTCAGGCGTTGTCACCGCTTTCTA 299
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 249 CTTCCAAATAAGAATCAAAGTGCCTCCAAAAGATTCCTCAGGCATTGTCACCGCTTTCTA 308
Query 300 TTTGACTTCGAAGGGAAACACACATGATGAAGTTGATTTTGAATTCTTGGGAAACAAAGA 359
|||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 309 TTTGACTTCGAAGGAAAACACCCATGATGAACTTGACATTGAATTCTTGGGAAACAAAGA 368
Query 360 AGGGAAAC---TA-GCAGTGCAAACAAATGTGTTTACTAATGGTAAAGGCA-ATAGAGAA 414
|||||||| || | ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 369 AGGGAAACCAATAAG-AGTGCAAACAAATGTGTTTACTAATGGTAAAGG-AGATAGAGAA 426
Query 415 CAGAAGTTAGCTCTCTGGTTCGATCCTTCTAAAGATTTCCACACTTACGCAATTCTGTGG 474
|||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 427 CAGAAGCTAGTTCTCTGGTTCGATCCTACCAAAGATTTCCACACTTACGCAATTCTGTGG 486
Query 475 AACCCGTATCAAATTGTGCTTTATGTGGACAACATTCCAGTACGGGTGTTCAAGAACACC 534
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 487 AACCCGTATCAAATTGTGTTTTATGTGGACAACATTCCAATACGGGTGTTCAAGAACACC 546
Query 535 ACAAGCCAAGGCATGAACTACCCATCAAAACCTATGCAAGTTGTGGTTAGCTTGTGGAAC 594
|||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 547 ACAAGCGAAGGCATGAACTACCCAGCAAAACCTATGCAAGTGGTGGTTAGCTTGTGGAAC 606
Query 595 GGTGAAAACTGGGCGACAGACGGTGGTAAAAGCAAGATTAATTGGTCTTTGGCTCCCTTT 654
|||||| |||||||||| || |||||||||||||||||||||||| |||| ||||| |||
Sbjct 607 GGTGAAGACTGGGCGACGGATGGTGGTAAAAGCAAGATTAATTGGGCTTTTGCTCCATTT 666
Query 655 AAGGCTAATTTTCAAGGCTTTAACAACTCTGGTTGTTTCACCAATGCTGA-AAAGAATGC 713
||||| ||||||||||||||||| |||||||| || ||| | |||| ||| ||| |||||
Sbjct 667 AAGGCCAATTTTCAAGGCTTTAATAACTCTGGATGCTTCGCGAATGGTGAGAAA-AATGC 725
Query 714 TTGTGGTTCGTCAGCGTACTGGTGGAATACTGGGAGTTATAGTAAGCTAAGTGACTCCGA 773
|||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 726 TTGTGGTTCGTCAGCGTACTGGTGGAATACCGGAAGTTATAGTAAGTTAAGTGACTCCGA 785
Query 774 ACAGAAAGCCTACACAAATGTGAGACAAAAGTACATGAATTATGATTATTGTTCTGATAA 833
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 786 ACAGAAAGCCTACACAAATGTGAGACAAAAGTACATGAACTATGATTATTGTTCTGATAA 845
Query 834 GGTTAGATTCCATGTTCCTCCAAGTGAATGTAAATGGAACAACTGA 879
|| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 846 GGGTAGATTCCGTGTTCCTCCAAGTGAATGTAAATGGAACAACTGA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5