BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13090.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359039 jgi|Araly1|359039|fgenesh1_pg.C_scaffold_9000079 1325 0.0
Ahg915127 jgi|Araly1|915127|Al_scaffold_0009_96 976 0.0
Ahg359038 jgi|Araly1|359038|fgenesh1_pg.C_scaffold_9000078 580 4e-165
> Ahg359039 jgi|Araly1|359039|fgenesh1_pg.C_scaffold_9000079
Length=879
Score = 1325 bits (717), Expect = 0.0
Identities = 825/877 (94%), Gaps = 8/877 (1%)
Strand=Plus/Plus
Query 1 ATGAATAGGATAAGATATTGT-TTTGAATTAGTTTCAGTATTGTTCTTGATGTTTACTGC 59
||||||| ||||| ||| | | |||||||| |||||||||||||||||||||||||| ||
Sbjct 1 ATGAATATGATAAAATA-TCTATTTGAATTTGTTTCAGTATTGTTCTTGATGTTTACGGC 59
Query 60 TAATGCAAGAGCTCGTGGACGTGGAGCTA-TAGATTTCGATGTGAACTATGTCGTTACAT 118
|||| | ||||||||||| ||||||| || | |||||||||||| |||||||||||||||
Sbjct 60 TAATACTAGAGCTCGTGGTCGTGGAGGTACT-GATTTCGATGTGCACTATGTCGTTACAT 118
Query 119 GGGGACAAGATCATATCTTGAAACTCAACCAAGGAAAAGAAGTTCAGCTCTCCATGGATT 178
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 GGGGACAAGATCACATCTTGAAACTCAACCAAGGGAAAGAAGTTCAGCTCTCCATGGATC 178
Query 179 ATTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGA 238
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGA 238
Query 239 GAATCAAATTGCCTCCAAGAGATTCCGCCGGTGTTGTCACAGCTTTCTACTTGACTTCTA 298
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 239 GAATCAAATTGCCTCCAAGAGATTCCGCGGGCGTTGTCACAGCTTTCTACTTGACTTCGA 298
Query 299 AGGGAGACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCGA 358
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 AGGGAAACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCAA 358
Query 359 TAGCAATTCAAACAAATGTATTTAGCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTC 418
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 359 CAGCAATTCAAACAAATGTGTTTACCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTC 418
Query 419 CTTGGTTCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCGTATCAGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 419 TTTGGTTCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCATATCATA 478
Query 479 TTGTGTTTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATATCaaaaaaaGTGGTG 538
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 479 TTGTGTTTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATAACAAAAGAAGTGGCG 538
Query 539 TGAACTATCCATCAAAGCCCATGCAACTTGTGGCTAGTTTGTGGAACGGTGAGAAC-TGG 597
|||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||
Sbjct 539 TGAACTATCCATCAAAGCCCATGCAACTTGAGACTAGTTTGTGGAACGGTGAGG-CGTGG 597
Query 598 GCAACAAGCGGTGGTAAAGAAAAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATAC 657
||||||| ||||||||| || ||||| ||||||||||||||||| |||||||| |||| |
Sbjct 598 GCAACAAACGGTGGTAAGGACAAGATTAATTGGGCCTATGCTCCTTTTAAGGCCCAATTC 657
Query 658 CAAGGCTTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGT 717
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 658 CAAGGCTTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATATTGCGAACGTTTGT 717
Query 718 GGTTCGACAAGGTACTGGTGGAACACAAGGACATATAGTCAG-TTAAGTGCAAATGAGCA 776
|||||||||| ||||||||||||||||||||| |||||| || |||||||||||||| ||
Sbjct 718 GGTTCGACAAAGTACTGGTGGAACACAAGGACGTATAGT-AGGTTAAGTGCAAATGAACA 776
Query 777 GAAGGTAATGGAGAATGTGAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCGGCC 836
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 777 GAAGGCAATGGAGAATGTGAGAGCAAAGTACATGAACTATGATTATTGTTCTGATCGGCC 836
Query 837 TAGATATCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873
|||||||||||||||||||||||||||||||||||||
Sbjct 837 TAGATATCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873
> Ahg915127 jgi|Araly1|915127|Al_scaffold_0009_96
Length=711
Score = 976 bits (528), Expect = 0.0
Identities = 640/691 (93%), Gaps = 19/691 (3%)
Strand=Plus/Plus
Query 185 CAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGAGAATCA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 CAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGAGAATCA 91
Query 245 AATTGCCTCCAAGAGATTCCGCCGGTGTTGTCACAGCTTTCTACTTGACTTCTAAGGGAG 304
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 92 AATTGCCTCCAAGAGATTCCGCGGGCGTTGTCACAGCTTTCTACTTGACTTCGAAGGGAA 151
Query 305 ACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCGATAGCAA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 152 ACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCAACAGCAA 211
Query 365 TTCAAACAAATGTATTTAGCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTCCTTGGT 424
||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 212 TTCAAACAAATGTGTTTACCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTCTTTGGT 271
Query 425 TCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCGTATCAGATTGTGT 484
||||||||||||||||||||||||||||| || || || | | | | || |
Sbjct 272 TCGATCCCACTACAAGTTTCCACACTTAT-GG--TC-----AA-AC-T-T---A-TGGGG 316
Query 485 TTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATATCaaaaaaaGTGGTGTGAACT 544
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 317 TTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATAACAAAAGAAGTGGCGTGAACT 376
Query 545 ATCCATCAAAGCCCATGCAACTTGTGGCTAGTTTGTGGAACGGTGAGAAC-TGGGCAACA 603
|||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||
Sbjct 377 ATCCATCAAAGCCCATGCAACTTGAGACTAGTTTGTGGAACGGTGAG-GCGTGGGCAACA 435
Query 604 AGCGGTGGTAAAGAAAAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATACCAAGGC 663
| ||||||||| || ||||| ||||||||||||||||| |||||||| |||| |||||||
Sbjct 436 AACGGTGGTAAGGACAAGATTAATTGGGCCTATGCTCCTTTTAAGGCCCAATTCCAAGGC 495
Query 664 TTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGTGGTTCG 723
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 496 TTCTCCGACTATGGTTGTCACGTAAATGGTCAGAGCAATATTGCGAACGTTTGTGGTTCG 555
Query 724 ACAAGGTACTGGTGGAACACAAGGACATATAGTCA-GTTAAGTGCAAATGAGCAGAAGGT 782
|||| ||||||||||||||||||||| |||||| | ||||||||||||||| |||||||
Sbjct 556 ACAAAGTACTGGTGGAACACAAGGACGTATAGT-AGGTTAAGTGCAAATGAACAGAAGGC 614
Query 783 AATGGAGAATGTGAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCGGCCTAGATA 842
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 615 AATGGAGAATGTGAGAGCAAAGTACATGAACTATGATTATTGTTCTGATCGGCCTAGATA 674
Query 843 TCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873
|||||||||||||||||||||||||||||||
Sbjct 675 TCCTGTTCCTCCTAGTGAATGTCGATGGAAT 705
> Ahg359038 jgi|Araly1|359038|fgenesh1_pg.C_scaffold_9000078
Length=900
Score = 580 bits (314), Expect = 4e-165
Identities = 648/802 (81%), Gaps = 52/802 (6%)
Strand=Plus/Plus
Query 93 TTTCGATGTGAACTATGTCGTTACATGGGGACAAGATCATATCTTGAAACT-CAACCAAG 151
||| |||| ||||||||| |||||||||||||||||||| |||| ||| | | ||||||
Sbjct 111 TTTTGATGAGAACTATGTGGTTACATGGGGACAAGATCACGTCTTCAAA-TCCTACCAAG 169
Query 152 GAAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCC 211
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 170 GCAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCCAAAAACC 229
Query 212 ACTACGGATCAGGA-TTCTTCCAAATGAGAATCAAATTGCCTCCAAGAGA-TTCCGCCGG 269
||||||| |||||| || |||||||||||||||||| || | || | | ||| || ||
Sbjct 230 ACTACGGTTCAGGACTT-TTCCAAATGAGAATCAAAGTGTTTGGAA-ACAATTCTGCTGG 287
Query 270 TGTTGTCACAGC-TTTCTACTTGACTTCTAAGGGAGACACCCACGATGAGGTTGACTTTG 328
||||||||| || ||| |||||||||||||| ||||||||||| || |||||||||||||
Sbjct 288 TGTTGTCACTGCCTTT-TACTTGACTTCTAAAGGAGACACCCAAGACGAGGTTGACTTTG 346
Query 329 AGTTCTTGGGGAATAGACAAGGAAAACCGATAGCAATT-CAAACAAATGTATTTA--GCA 385
||||||||||||| | | |||| ||||| ||| || || || |||||||| | | | |
Sbjct 347 AGTTCTTGGGGAACATAGAAGGCAAACCAATAACA-TTACAGACAAATGTGTACACTG-A 404
Query 386 ATGGACAA-GGAGGTAGAGAACAAAAGTTTGT-TCCTTGGTTCGATCCCACTACA-AGTT 442
| || ||| ||| ||||||||||| |||| | || |||||||||||| ||||| | ||
Sbjct 405 A-GG-CAAAGGAAATAGAGAACAAAGGTTT-TCTCTTTGGTTCGATCCAACTACTGA-TT 460
Query 443 TCCACACTTATGGGATTCTTTGGAATCCGTATCAGATTGTGTTTTACGTGGACAA-AGTT 501
||||||||||||| |||||||||||||| ||||| || |||||||||||||| || | |
Sbjct 461 TCCACACTTATGGCATTCTTTGGAATCCATATCATATCGTGTTTTACGTGGATAATA-TC 519
Query 502 CCAATAAGAGTATTCAAGAATA-TCaaaaaaaGTGGTGTGAACTATCCATCAAAGCCCAT 560
||||||||||| ||||| || | | | || | ||| ||| ||||||||||||||| ||
Sbjct 520 CCAATAAGAGTGTTCAATAACAAT-ACAAGCACTGGCATGAGCTATCCATCAAAGCCTAT 578
Query 561 GCAACTTGTG-GCTAGTTTGTGGAACGGTGAGAACTGGGCAACA-AGCGGTGGTAAAGAA 618
|||| | ||| | ||||||||||||||| || || ||||||||| | ||||| ||| |
Sbjct 579 GCAAGTGGTGAG-TAGTTTGTGGAACGGAGAAAATTGGGCAACAGAT-GGTGGCAAA-AC 635
Query 619 -AAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATAC-CAAGGCTTCTCCGAC-CAT 675
||||| |||||||||||||||||||||||||| |||| ||||| ||||||||| |
Sbjct 636 CAAGATTAATTGGGCCTATGCTCCATTTAAGGC-CAATTTTCAAGGTTTCTCCGACTCC- 693
Query 676 GGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGTGGTTCGA-CAAGGTACTG 734
|||||||| || ||| || ||| || ||| | || | ||||||||| | ||| ||| ||
Sbjct 694 GGTTGTCATGTCGATGATCTGAGTAACAATTCCAAAGCTTGTGGTTC-ATCAATGTATTG 752
Query 735 GTGGAACACAAGGACA-TATAGTCAGT-TAAG--TGCAAATGAGCAGAAGGTAATGGA-G 789
||||||||| | || | |||| | || | || | | | |||||||| || | | |
Sbjct 753 GTGGAACACCATGA-AGTATAATT-GTCTTAGCAT-CTAC-GAGCAGAAAGTC-TACAAG 807
Query 790 AATGT--GAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCG-GCCTAGATATCCT 846
||||| ||||| ||| || |||| |||||| ||||||||||||| || ||||| ||||
Sbjct 808 AATGTTAGAGAG-AAA-TATATGAACTATGACTATTGTTCTGATCAAGC-TAGATTTCCT 864
Query 847 GTTCCTCCTAGTGAATGTCGAT 868
|| ||||| |||||||||||
Sbjct 865 ATTTTTCCTAATGAATGTCGAT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5