BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13090.1 Length=879 Score E Sequences producing significant alignments: (Bits) Value Ahg359039 jgi|Araly1|359039|fgenesh1_pg.C_scaffold_9000079 1325 0.0 Ahg915127 jgi|Araly1|915127|Al_scaffold_0009_96 976 0.0 Ahg359038 jgi|Araly1|359038|fgenesh1_pg.C_scaffold_9000078 580 4e-165 > Ahg359039 jgi|Araly1|359039|fgenesh1_pg.C_scaffold_9000079 Length=879 Score = 1325 bits (717), Expect = 0.0 Identities = 825/877 (94%), Gaps = 8/877 (1%) Strand=Plus/Plus Query 1 ATGAATAGGATAAGATATTGT-TTTGAATTAGTTTCAGTATTGTTCTTGATGTTTACTGC 59 ||||||| ||||| ||| | | |||||||| |||||||||||||||||||||||||| || Sbjct 1 ATGAATATGATAAAATA-TCTATTTGAATTTGTTTCAGTATTGTTCTTGATGTTTACGGC 59 Query 60 TAATGCAAGAGCTCGTGGACGTGGAGCTA-TAGATTTCGATGTGAACTATGTCGTTACAT 118 |||| | ||||||||||| ||||||| || | |||||||||||| ||||||||||||||| Sbjct 60 TAATACTAGAGCTCGTGGTCGTGGAGGTACT-GATTTCGATGTGCACTATGTCGTTACAT 118 Query 119 GGGGACAAGATCATATCTTGAAACTCAACCAAGGAAAAGAAGTTCAGCTCTCCATGGATT 178 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 119 GGGGACAAGATCACATCTTGAAACTCAACCAAGGGAAAGAAGTTCAGCTCTCCATGGATC 178 Query 179 ATTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGA 238 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AGTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGA 238 Query 239 GAATCAAATTGCCTCCAAGAGATTCCGCCGGTGTTGTCACAGCTTTCTACTTGACTTCTA 298 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 239 GAATCAAATTGCCTCCAAGAGATTCCGCGGGCGTTGTCACAGCTTTCTACTTGACTTCGA 298 Query 299 AGGGAGACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCGA 358 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 299 AGGGAAACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCAA 358 Query 359 TAGCAATTCAAACAAATGTATTTAGCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTC 418 |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 359 CAGCAATTCAAACAAATGTGTTTACCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTC 418 Query 419 CTTGGTTCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCGTATCAGA 478 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 419 TTTGGTTCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCATATCATA 478 Query 479 TTGTGTTTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATATCaaaaaaaGTGGTG 538 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct 479 TTGTGTTTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATAACAAAAGAAGTGGCG 538 Query 539 TGAACTATCCATCAAAGCCCATGCAACTTGTGGCTAGTTTGTGGAACGGTGAGAAC-TGG 597 |||||||||||||||||||||||||||||| | |||||||||||||||||||| | ||| Sbjct 539 TGAACTATCCATCAAAGCCCATGCAACTTGAGACTAGTTTGTGGAACGGTGAGG-CGTGG 597 Query 598 GCAACAAGCGGTGGTAAAGAAAAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATAC 657 ||||||| ||||||||| || ||||| ||||||||||||||||| |||||||| |||| | Sbjct 598 GCAACAAACGGTGGTAAGGACAAGATTAATTGGGCCTATGCTCCTTTTAAGGCCCAATTC 657 Query 658 CAAGGCTTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGT 717 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 658 CAAGGCTTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATATTGCGAACGTTTGT 717 Query 718 GGTTCGACAAGGTACTGGTGGAACACAAGGACATATAGTCAG-TTAAGTGCAAATGAGCA 776 |||||||||| ||||||||||||||||||||| |||||| || |||||||||||||| || Sbjct 718 GGTTCGACAAAGTACTGGTGGAACACAAGGACGTATAGT-AGGTTAAGTGCAAATGAACA 776 Query 777 GAAGGTAATGGAGAATGTGAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCGGCC 836 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 777 GAAGGCAATGGAGAATGTGAGAGCAAAGTACATGAACTATGATTATTGTTCTGATCGGCC 836 Query 837 TAGATATCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873 ||||||||||||||||||||||||||||||||||||| Sbjct 837 TAGATATCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873 > Ahg915127 jgi|Araly1|915127|Al_scaffold_0009_96 Length=711 Score = 976 bits (528), Expect = 0.0 Identities = 640/691 (93%), Gaps = 19/691 (3%) Strand=Plus/Plus Query 185 CAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGAGAATCA 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32 CAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGAGAATCA 91 Query 245 AATTGCCTCCAAGAGATTCCGCCGGTGTTGTCACAGCTTTCTACTTGACTTCTAAGGGAG 304 |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| Sbjct 92 AATTGCCTCCAAGAGATTCCGCGGGCGTTGTCACAGCTTTCTACTTGACTTCGAAGGGAA 151 Query 305 ACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCGATAGCAA 364 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 152 ACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCAACAGCAA 211 Query 365 TTCAAACAAATGTATTTAGCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTCCTTGGT 424 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 212 TTCAAACAAATGTGTTTACCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTCTTTGGT 271 Query 425 TCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCGTATCAGATTGTGT 484 ||||||||||||||||||||||||||||| || || || | | | | || | Sbjct 272 TCGATCCCACTACAAGTTTCCACACTTAT-GG--TC-----AA-AC-T-T---A-TGGGG 316 Query 485 TTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATATCaaaaaaaGTGGTGTGAACT 544 ||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| Sbjct 317 TTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATAACAAAAGAAGTGGCGTGAACT 376 Query 545 ATCCATCAAAGCCCATGCAACTTGTGGCTAGTTTGTGGAACGGTGAGAAC-TGGGCAACA 603 |||||||||||||||||||||||| | |||||||||||||||||||| | ||||||||| Sbjct 377 ATCCATCAAAGCCCATGCAACTTGAGACTAGTTTGTGGAACGGTGAG-GCGTGGGCAACA 435 Query 604 AGCGGTGGTAAAGAAAAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATACCAAGGC 663 | ||||||||| || ||||| ||||||||||||||||| |||||||| |||| ||||||| Sbjct 436 AACGGTGGTAAGGACAAGATTAATTGGGCCTATGCTCCTTTTAAGGCCCAATTCCAAGGC 495 Query 664 TTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGTGGTTCG 723 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 496 TTCTCCGACTATGGTTGTCACGTAAATGGTCAGAGCAATATTGCGAACGTTTGTGGTTCG 555 Query 724 ACAAGGTACTGGTGGAACACAAGGACATATAGTCA-GTTAAGTGCAAATGAGCAGAAGGT 782 |||| ||||||||||||||||||||| |||||| | ||||||||||||||| ||||||| Sbjct 556 ACAAAGTACTGGTGGAACACAAGGACGTATAGT-AGGTTAAGTGCAAATGAACAGAAGGC 614 Query 783 AATGGAGAATGTGAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCGGCCTAGATA 842 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 615 AATGGAGAATGTGAGAGCAAAGTACATGAACTATGATTATTGTTCTGATCGGCCTAGATA 674 Query 843 TCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873 ||||||||||||||||||||||||||||||| Sbjct 675 TCCTGTTCCTCCTAGTGAATGTCGATGGAAT 705 > Ahg359038 jgi|Araly1|359038|fgenesh1_pg.C_scaffold_9000078 Length=900 Score = 580 bits (314), Expect = 4e-165 Identities = 648/802 (81%), Gaps = 52/802 (6%) Strand=Plus/Plus Query 93 TTTCGATGTGAACTATGTCGTTACATGGGGACAAGATCATATCTTGAAACT-CAACCAAG 151 ||| |||| ||||||||| |||||||||||||||||||| |||| ||| | | |||||| Sbjct 111 TTTTGATGAGAACTATGTGGTTACATGGGGACAAGATCACGTCTTCAAA-TCCTACCAAG 169 Query 152 GAAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCTAAAAGCC 211 | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 170 GCAAAGAAGTTCAGCTCTCCATGGATTATTCTTCAGGTTCTGGCTTTGAGTCCAAAAACC 229 Query 212 ACTACGGATCAGGA-TTCTTCCAAATGAGAATCAAATTGCCTCCAAGAGA-TTCCGCCGG 269 ||||||| |||||| || |||||||||||||||||| || | || | | ||| || || Sbjct 230 ACTACGGTTCAGGACTT-TTCCAAATGAGAATCAAAGTGTTTGGAA-ACAATTCTGCTGG 287 Query 270 TGTTGTCACAGC-TTTCTACTTGACTTCTAAGGGAGACACCCACGATGAGGTTGACTTTG 328 ||||||||| || ||| |||||||||||||| ||||||||||| || ||||||||||||| Sbjct 288 TGTTGTCACTGCCTTT-TACTTGACTTCTAAAGGAGACACCCAAGACGAGGTTGACTTTG 346 Query 329 AGTTCTTGGGGAATAGACAAGGAAAACCGATAGCAATT-CAAACAAATGTATTTA--GCA 385 ||||||||||||| | | |||| ||||| ||| || || || |||||||| | | | | Sbjct 347 AGTTCTTGGGGAACATAGAAGGCAAACCAATAACA-TTACAGACAAATGTGTACACTG-A 404 Query 386 ATGGACAA-GGAGGTAGAGAACAAAAGTTTGT-TCCTTGGTTCGATCCCACTACA-AGTT 442 | || ||| ||| ||||||||||| |||| | || |||||||||||| ||||| | || Sbjct 405 A-GG-CAAAGGAAATAGAGAACAAAGGTTT-TCTCTTTGGTTCGATCCAACTACTGA-TT 460 Query 443 TCCACACTTATGGGATTCTTTGGAATCCGTATCAGATTGTGTTTTACGTGGACAA-AGTT 501 ||||||||||||| |||||||||||||| ||||| || |||||||||||||| || | | Sbjct 461 TCCACACTTATGGCATTCTTTGGAATCCATATCATATCGTGTTTTACGTGGATAATA-TC 519 Query 502 CCAATAAGAGTATTCAAGAATA-TCaaaaaaaGTGGTGTGAACTATCCATCAAAGCCCAT 560 ||||||||||| ||||| || | | | || | ||| ||| ||||||||||||||| || Sbjct 520 CCAATAAGAGTGTTCAATAACAAT-ACAAGCACTGGCATGAGCTATCCATCAAAGCCTAT 578 Query 561 GCAACTTGTG-GCTAGTTTGTGGAACGGTGAGAACTGGGCAACA-AGCGGTGGTAAAGAA 618 |||| | ||| | ||||||||||||||| || || ||||||||| | ||||| ||| | Sbjct 579 GCAAGTGGTGAG-TAGTTTGTGGAACGGAGAAAATTGGGCAACAGAT-GGTGGCAAA-AC 635 Query 619 -AAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATAC-CAAGGCTTCTCCGAC-CAT 675 ||||| |||||||||||||||||||||||||| |||| ||||| ||||||||| | Sbjct 636 CAAGATTAATTGGGCCTATGCTCCATTTAAGGC-CAATTTTCAAGGTTTCTCCGACTCC- 693 Query 676 GGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGTGGTTCGA-CAAGGTACTG 734 |||||||| || ||| || ||| || ||| | || | ||||||||| | ||| ||| || Sbjct 694 GGTTGTCATGTCGATGATCTGAGTAACAATTCCAAAGCTTGTGGTTC-ATCAATGTATTG 752 Query 735 GTGGAACACAAGGACA-TATAGTCAGT-TAAG--TGCAAATGAGCAGAAGGTAATGGA-G 789 ||||||||| | || | |||| | || | || | | | |||||||| || | | | Sbjct 753 GTGGAACACCATGA-AGTATAATT-GTCTTAGCAT-CTAC-GAGCAGAAAGTC-TACAAG 807 Query 790 AATGT--GAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCG-GCCTAGATATCCT 846 ||||| ||||| ||| || |||| |||||| ||||||||||||| || ||||| |||| Sbjct 808 AATGTTAGAGAG-AAA-TATATGAACTATGACTATTGTTCTGATCAAGC-TAGATTTCCT 864 Query 847 GTTCCTCCTAGTGAATGTCGAT 868 || ||||| ||||||||||| Sbjct 865 ATTTTTCCTAATGAATGTCGAT 886 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32556971118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5