BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13100.2
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359035 jgi|Araly1|359035|fgenesh1_pg.C_scaffold_9000075 994 0.0
> Ahg359035 jgi|Araly1|359035|fgenesh1_pg.C_scaffold_9000075
Length=780
Score = 994 bits (538), Expect = 0.0
Identities = 662/721 (92%), Gaps = 11/721 (2%)
Strand=Plus/Plus
Query 88 GTGGAGAATGGCCGGAGCTCAGTGACTTTAGAAGATATTCTGATGGCTGAAACGAGCAGT 147
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 61 GTGGAGAATGGCCGGAGCTCAGTGACTCTAGAAGATATTCTGATGGCTGAAACGAGCGGT 120
Query 148 TTCCGATCTCTTACTACGCCGACAACTCCGGTGAGGAATCACTCTAGTAGTAGTTTACTT 207
||||||||||||||| ||||| | |||||||||| || ||||| | |||||||||||||
Sbjct 121 TTCCGATCTCTTACTGCGCCGCCTTCTCCGGTGAGAAACCACTCGAATAGTAGTTTACTT 180
Query 208 GACGTGATGAGAAGAGAGCGTCGCCGTGATAAAACCGCTTGGAAATCTCTCCGGGATAAG 267
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACGTTATGAGAAGAGAGCGTCGCCGTGATAAAACCGCTTGGAAATCTCTCCGGGATAAG 240
Query 268 CTCCGTCTTAAACGCACCGCTACTGGTTGGATCTCGTCTAATCCTATCCCTACCTTGGAT 327
||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CTCCGCCTTAAACGCGCCGCTACTGGTTGGATCTCGTCTAATCCTATCCCTAATTTGGAT 300
Query 328 AATCATATTCTTACTCCGGATAACGACAGCCACCGATTTAACCGCCTTGGATTCCTCCTC 387
|||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 301 AATCATATCCTTACTCCGGATAGCGACAGCCACCGGTTTAACCGCCTTGGATTCCTCCTC 360
Query 388 ACTAACTCGGAGACAAACCGGAGCAGTCGTGACGTCAGCGACG-CAGCAGAGGAAGCGGC 446
|||| ||||||||||||||||||| | |||| |||||||| | | | ||||||||||||
Sbjct 361 TCTAATTCGGAGACAAACCGGAGCAATGGTGATGTCAGCGATGGCGG-AGAGGAAGCGGC 419
Query 447 GGAGCGAGAAGGAAGGCTCCGGCTAGGCACCGTGTTGGCGGCGGA--GAGAG-A---GC- 499
|||||||||||||||||||| ||||||||| |||||||| ||||| ||||| | ||
Sbjct 420 GGAGCGAGAAGGAAGGCTCCAGCTAGGCACGGTGTTGGCCGCGGATAGAGAGGAAATGCA 479
Query 500 -CA-CCGAGGATGTCTCTAATGGAGTTGTTGGAGGATAATGATGGACATATGTATGAACT 557
| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 480 GCCGCCGAGGATGTCTTTAATGGAGTTGTTGGAGGATAATGATGGACAAATGTATGAGGT 539
Query 558 CAGCGCGCGAGACGAGGTGGAAGTGGAGGGAAGAGATGGCTGCGACGGGGGAGGAGAGGC 617
||||||| |||| |||||||||| ||||| ||||||||| |||| | | |||||||||||
Sbjct 540 CAGCGCGAGAGAAGAGGTGGAAGCGGAGGAAAGAGATGGTTGCGGCCGCGGAGGAGAGGC 599
Query 618 GGTGGCGGTGACGGGGGCAGCGGAGTTGGGTTGTTGCGTGTGTATGGTAAGGAGTAAAGG 677
|||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 600 GGTGGCGGTGACCGGGGCAGCGGAGTTGGGTTGTTGTGTGTGTATGATAAGGAGTAAAGG 659
Query 678 TGCGGCTTTTATACCTTGCGGACATACGTTTTGTAGATTGTGTTCGAGAGAGCTTTGGGT 737
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 660 TGCGGCTTTTATACCTTGCGGACATACATTTTGCCGATTGTGTTCGAGAGAGCTTTGGGT 719
Query 738 ACAGAGAGGAAACTGTCCACTATGTAACACTGCCATTTTACAAGTTCTTGATATTTTCTA 797
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 ACAGAGAGGAAACTGTCCACTATGTAACACTACCATTTTACAAGTTCTTGATATTTTCTA 779
Query 798 G 798
|
Sbjct 780 G 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5