BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13110.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497083 jgi|Araly1|497083|fgenesh2_kg.9__48__AT4G13110.1 959 0.0
> Ahg497083 jgi|Araly1|497083|fgenesh2_kg.9__48__AT4G13110.1
Length=1147
Score = 959 bits (519), Expect = 0.0
Identities = 612/658 (93%), Gaps = 2/658 (0%)
Strand=Plus/Plus
Query 186 ttcttcttcATGGAGTTTCGGCAATCTAATCAAAACCCTATCGACAAAATCCGAATCTGT 245
||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 104 TTCATCTTCATGGAGTTTCGGTAATCTAATCAAAACCCTAGCGACAAAATCCGAATCTGT 163
Query 246 AATCGGATCCTACCGTCGCGATTTGGTCGAATTCGGATCCGAATTGAAGAAAGAAACCTC 305
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 164 AATCGGATCCTACCGTCGCGATTTCGAGGAATTCGGATCCGAATTGAAGAAAGAAACCTC 223
Query 306 AATAATCCGACGAGTAGCTTCAAGATTACCTGATTCTCTCGAAATTGGCGCCTCCGTCGC 365
||||||||||||||||||||| |||||||||||||||||||| || || ||| |||||||
Sbjct 224 AATAATCCGACGAGTAGCTTCGAGATTACCTGATTCTCTCGAGATCGGAGCCGCCGTCGC 283
Query 366 TTCGGAATCTCTCGAATCGGTAGGTCAAGTTATCGACGATATCGGCGCCACCGTGTGGAA 425
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct 284 TTCGGAATCTCTCGAATCGGTTGGTCAAGTTATCGACGATATCGGTGCCTCCGTGTGGAA 343
Query 426 ATCAACGGCTAAGATTATTTCTCGTGGTAAGGAATCTTTAGAACCGAATCGTGACCGTAC 485
||||||||||||||||||||||| ||||||||| ||| || ||||| |||||||||||||
Sbjct 344 ATCAACGGCTAAGATTATTTCTCATGGTAAGGAGTCTCTAAAACCGGATCGTGACCGTAC 403
Query 486 AAATCAGGTTTTGTC-GTTGAAACCTTATCGTCGTTTTGAGATGATGTTACTTGCGTTAC 544
|||||||| ||| || || |||||| ||| |||||||||||||||||||||||||| | |
Sbjct 404 AAATCAGGGTTTATCTGT-GAAACCCTATAGTCGTTTTGAGATGATGTTACTTGCGATGC 462
Query 545 AATCTGATAAAGGCACGTTTGTTAGAGAACCTGATGATTTAAGTGATTTTGAGAATTGGA 604
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 463 AATCTGATAAAGGAACGTTTGTCAGAGAACCTGATGATTTAAGTAATTTTGAGAATTGGA 522
Query 605 GTTTAGGGTTGAAGTTAGAGGAGAAAAGGAATGAGATTGTTGAGTTGATTAATGGGAACA 664
|||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 523 GTTTAGGGTTTAAGTTAGAGGAGAAAAGGAATGAGATTGTTGATTTAATTAATGGAAACA 582
Query 665 AAGGTGTTAAAGAGATCTATGAGGAGATTGTTCCTGTTGAAGTTGATGCTGAGACTTTTT 724
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 583 AAGTTGTTAAAGAGATCTATGAGGAGATTGTTCCTGTGGAAGTTGATGCTGAGACTTTCT 642
Query 725 GGAGAAGGTATTATTATAAAGTTTATAAGCTTGAGCAAGTAGAGGAAGCTAGGGTTAAGC 784
|||| ||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 643 GGAGGAGGTATTTTTATAAAGTTAATAAGCTTGAGCAAGTAGAAGAAGCTAGAGTTAAGC 702
Query 785 TTGTGAAGAGAGCTATTTCTGGTGAAGAAGATGAGGATTTAAGCTGGGATCTTGATGA 842
|| ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 703 TTCTGAAGAGAGCTATTTCTGGTGAAGAAGATGAAGATTTGAGCTGGGAGCTTGATGA 760
Score = 309 bits (167), Expect = 3e-83
Identities = 297/352 (84%), Gaps = 39/352 (11%)
Strand=Plus/Plus
Query 844 GAGAAGGAGAAGGTAGAGAGCAGAGATGTTTCGTCTAAGGATAGTGATTATTCGGTGATT 903
||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 798 GAGGAGGAGAAGGTAGAGAGCAGAGAGGTTTCGTCTAAGGACAGTGATTATTCGGTGATT 857
Query 904 TCGACACAGCCATCGTTACTTGGTAG-TGAAGATCTTGGGTGGGATAAGATGGAAGAAGA 962
||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 858 TCGACACAGCCATCGTTACCT-GAAGTTGAAGATCTTGGGTGGGATAAGATGGAAGAAGA 916
Query 963 TATCAGAAGCAATGAGGAGAG-A-TT-GGA--TTGG-C--G--A------AGA---CGGG 1003
| ||||||||||||||||||| | || ||| |||| | | | ||| ||||
Sbjct 917 TGTCAGAAGCAATGAGGAGAGGAGTTTGGAGGTTGGTCAAGGGATTGTGGAGAGATCGGG 976
Query 1004 CCGGTGTAG-CGG-T--G-G-AG-G--A-AG-AAGA-G-G-ATTTATCTTGGGATATTGA 1049
|| | || ||| | | | || | | || |||| | | |||||||||||||||||||
Sbjct 977 TTGGCGAAGACGGGTTAGTGTAGCGGTAGAGGAAGAAGAGGATTTATCTTGGGATATTGA 1036
Query 1050 AGATGAAGATGATGACTCTGTTCA--A-CAATAGATAGAGTATACTTGTGTTACAGAAAA 1106
|||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||||
Sbjct 1037 AGATGAAGATGATGACTCTGTTCATCAACAATAGATAGAGTATACTTGTCTTATAGAAAA 1096
Query 1107 GGCAAAGATTTAGTGTGATCATAGTTATTAAGTGTGATCTATACCTATACAA 1158
||||| ||||||||||||||| ||||||| ||||||||| |||| |||||||
Sbjct 1097 GGCAA-GATTTAGTGTGATCACAGTTATTTAGTGTGATCAATACATATACAA 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5