BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13150.1

Length=1199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497081 jgi|Araly1|497081|fgenesh2_kg.9__46__AT4G13140.1           767    0.0  


> Ahg497081 jgi|Araly1|497081|fgenesh2_kg.9__46__AT4G13140.1
Length=507

 Score =  767 bits (415),  Expect = 0.0
 Identities = 479/510 (94%), Gaps = 3/510 (1%)
 Strand=Plus/Plus

Query  681   ATATGATACCGTTTTACATTGGTAAGCTCTTTAGACAAAGTGGAGCATCAGATGATGTTT  740
             ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct  1     ATATGATACCGTTTTACCTTGGGAAGCTCTTCAGACAAAGTGGAGCATCAGATGATGTTT  60

Query  741   GTTCAAAGCTCGGTATAGGTAAAGAGAAAGCGTTAAGCATTACTCAGGCAGTCCAAAAGT  800
             |||||||||| ||||||||||| ||||||||  | |||||||||||||| ||||||||||
Sbjct  61    GTTCAAAGCTGGGTATAGGTAAGGAGAAAGCACTGAGCATTACTCAGGCTGTCCAAAAGT  120

Query  801   ATGGCAACCTCTCAGGTTTTGTGGAAAGATTTTCTGTGGGAATGAGGAATCCTACAGCGT  860
             | |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct  121   ACGGCAACCTCTCAGGTTTTGTTGAAAGATTTTCTTTGGGAATGAGGAATCCTACAGCAT  180

Query  861   TCTTCGCCGGGGCTCTTGGAATATCTCCAGAGTGTTTCTTTGCAGGAGTTTGTTGCGGTG  920
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  181   TCTTCGCCGGGGCTCTTGGAATATCTCCAGAGTGTTTCTTTGCAGGAGTTTGTTGTGGCG  240

Query  921   GTTTGATTACTCTTCCACTTCAGCTTGTGATTGGGTTTCTCCTTAGAGAACGCCCCATGT  980
             | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  241   GCTTGATTACTCTTCCACTTCAGCTTGTGATTGGGTTTCTCGTTAGAGAACGCCCCATGT  300

Query  981   TTGCTCTTGCAGCAGTAGCAACTGCAGTGGGAATATGGACAATCTTTCCCTATGTGGTGG  1040
             |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  301   TTGCTCTTGCAGCAGTAGCAACTGCAGTGGGAATATGGACGATCTTCCCCTATGTGGTGG  360

Query  1041  CTGCATCTACGGCTTTGTTCCTCTACATTCGCAGTCGCTACTCCACGAAAGATTAGTTCT  1100
             ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  361   CTGCATCCACGGCTTTGTTCATCTACATTCGCAGTCGCTACTCCACGAAAGATTAGCTCT  420

Query  1101  TCTTGTTACTACTCAATATCAATACATAGAAAGATGTAAGATCATATAAAAAGATCAATT  1160
             |||||||||| |  |||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct  421   TCTTGTTACT-C--AATATCTATACATAGAAAGATGTAAGATCATATTAAAAGATCAAAT  477

Query  1161  ATAGTACTCAGCCAACCAAATTAATGGCTT  1190
             |||||||| ||||| ||||| |||||||||
Sbjct  478   ATAGTACTTAGCCAGCCAAACTAATGGCTT  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44756304558


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5