BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13160.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497080 jgi|Araly1|497080|fgenesh2_kg.9__45__AT4G13160.1 992 0.0
> Ahg497080 jgi|Araly1|497080|fgenesh2_kg.9__45__AT4G13160.1
Length=996
Score = 992 bits (537), Expect = 0.0
Identities = 799/914 (87%), Gaps = 64/914 (7%)
Strand=Plus/Plus
Query 163 ATGGACTACCAAGAAAGTTATAGATTGACATTTTATGGAATTTTGGTTGCTTTTATGGAA 222
|||||||||| |||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 55 ATGGACTACCCGGAAAGTTATAGATTGACATTTTGTGGACTTGTGGTTGCTTTTATGGAA 114
Query 223 TTAGCATTTGCTTATTGTCTTCTATGCGTATCAG-CTTTCGTCTTTATTACATCGAAGTT 281
|||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 115 TTAGCATTTGCTTATTGTCTTCTATGTGTATC-GTCTATCGTCTTTATTACATCGAAGTT 173
Query 282 GCTACTG--TTT---ATG-CCATG---T---A-TC--GGGTACCAAAACAGTGATCTCTG 326
||||||| ||| ||| || || | | || |||| ||||||||||||||||||
Sbjct 174 GCTACTGTTTTTGCCATGTCCTTGTTCTGGAATTCTTGGGTGCCAAAACAGTGATCTCTG 233
Query 327 CATCCAAAAACTTCTCTTTGATTGGCCATTCAGAATCATACTCAGAGTTCAGAAGCTAGC 386
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 234 CATCCAAAAACTTCTCTTTGATTGGCCATTCAGAATCATACTCAGAGTCCAGAAGCTAGC 293
Query 387 TACTACTAATAGGCCAAGCGTTTTACATCATcaagaacaagaacaagaacaagaacaaga 446
|||||||| ||| | |||| |||| ||||||| || | |||| |||| |||
Sbjct 294 TACTACTACTAGACTAAGCCTTTTGCATCATC-AG-----G---AAGATCAAG---AAG- 340
Query 447 acaagaagagaagaCTATGGTTGATAAAGATAAGAACTCGGAATTGATGGATAGAGTTAG 506
|| | |||||| | ||||||| ||||||||||||| ||||| ||| |||| ||| ||
Sbjct 341 ---AG-A-AGAAGAATTTGGTTGAGAAAGATAAGAACTTGGAATCGATTGATAAAGTGAG 395
Query 507 GTTGTTGGAAGTAGCTGTTGAGCAAGAGAAAGTAGCTAAAGCTGCTTTAATGGTTGAATT 566
||||||||||| |||||||||| |||||| ||| |||| |||||||||||||||||||||
Sbjct 396 GTTGTTGGAAGAAGCTGTTGAGGAAGAGAGAGTTGCTAGAGCTGCTTTAATGGTTGAATT 455
Query 567 GGAACAAGAAAGAGCAGCTTCAGCATCAGCAGCTGATGAAGCTATGGCTATGATTTTAAG 626
||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 456 GGAGGAAGAAAGAGCAGCTTCAGCATCAGCAGCTGATGAAGCGATGGCTATGATTCTGAG 515
Query 627 GCTACAAGCGGATAAAGCTTCGCTTGAGATGGAAGGGAAGCAATATGAGAGAATGATTGA 686
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GTTACAAGCGGATAAAGCTTCGCTTGAGATGGAAGGGAAGCAATATGAGAGAATGATTGA 575
Query 687 TGAGAAATTTGCTTATGATGAGGAAGAGATGAATATTCTCAAGGAGATTCTTTTTAAAAG 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGAGAAATTTGCTTATGATGAGGAAGAGATGAATATTCTCAAGGAGATTCTTTTTAAAAG 635
Query 747 GGAGAGAGAAAAGCATTTTCTTGAGAAAGAACTTGAGACTTACAAGCACATTGATGATGA 806
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 AGAGAGAGAGAAGCATTTTCTTGAGAAAGAACTTGAGACTTACAAGCACATTGATGATGA 695
Query 807 TCAAGAGACGGAAGA---------CAACGAGAAGAGAGAATGCGATGAGGATGGAGAACC 857
||||||||| |||| |||||||||||||||| ||||||||||| |||||||
Sbjct 696 TCAAGAGACCCAAGATGATGGTTTCAACGAGAAGAGAGAAGGCGATGAGGATAGAGAACC 755
Query 858 GATTGTGTATGATGTTCATGTCATTGAGGATAATAGTCA-GACTAAAGTGAGGGATGATG 916
|||| |||||||||||||||||||||||||||| ||| | | |||| || ||||||||||
Sbjct 756 GATTATGTATGATGTTCATGTCATTGAGGATAACAGTAATG-CTAAGGTCAGGGATGATG 814
Query 917 ATGTAGCAGAACACAAAGAGATGAAG-----G-AA---GAAG--A-G-A--T---AGTCA 958
|||||||||||||||||||||||||| | || |||| | | | | |||||
Sbjct 815 ATGTAGCAGAACACAAAGAGATGAAGCAAATGGAACATGAAGTGAAGCAACTTCTAGTCA 874
Query 959 AGGATCATGATTCAGTATCATCACCTACTTCATCTTCAACACATCTCCCATAAGTTTCTA 1018
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 875 AGGATCATGATTCAATATCATCACCTACTTCATCTTCCATTCATCTCCCATAAGTTTCTA 934
Query 1019 ATTCTGATTGTTGA 1032
|||||| |||||||
Sbjct 935 ATTCTGGTTGTTGA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5