BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13170.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915111 jgi|Araly1|915111|Al_scaffold_0009_80 983 0.0
Ahg930609 jgi|Araly1|930609|scaffold_303066.1 676 0.0
> Ahg915111 jgi|Araly1|915111|Al_scaffold_0009_80
Length=621
Score = 983 bits (532), Expect = 0.0
Identities = 591/620 (95%), Gaps = 2/620 (0%)
Strand=Plus/Plus
Query 53 ATGGTGTCTGGGTCAGGGATATGCGCGAAGCGCGTTGTCGTCGACGGGCGACACCACATG 112
||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1 ATGGTGTCTGGGTCAGGAATATGCGCTAAGCGCGTGGTCGTAGACGGGCGACACCACATG 60
Query 113 CTTGGTCGTCTAGCTTCCAAC-ACTGCGAAGGAGTTACTTAACGGACAGGAAGTGGTTGT 171
||||||||||| |||||| || ||||| ||||||||||| ||||||||| ||||||| ||
Sbjct 61 CTTGGTCGTCTGGCTTCC-ACAACTGCAAAGGAGTTACTCAACGGACAGAAAGTGGTGGT 119
Query 172 TGTCCGATGTGAAGAGATTTGTCTCTCGGGAGGTTTGGTTCGACAAAAGATGAAGTACAT 231
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 TGTCCGATGTGAAGAGATTTGTCTCTCAGGAGGTTTGGTTCGACAAAAGATGAAGTACAT 179
Query 232 GAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACTTTCGTGC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACTTTCGTGC 239
Query 292 TCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACCAAGCGTGG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACCAAGCGTGG 299
Query 352 TGCTGCTGCACTTGCTCGCTTGAAGGTTTTTGAGGGAATCCCACCTCCTTACGACAAGAT 411
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 300 TGCTGCTGCACTTGCTCGCTTGAAGGTTTTCGAGGGAATCCCACCTCCATATGATAAGAT 359
Query 412 TAAGAGAATGGTTATTCCTGATGCTCTTAAGGTTTTGAGACTTCAGAGTGGTCACAAGTA 471
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 TAAGAGAATGGTTATCCCTGATGCTCTTAAGGTTTTGAGACTTCAGAGTGGCCACAAGTA 419
Query 472 CTGCTTATTGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAGA 531
|||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 420 CTGCTTATTGGGACGTCTATCGTCTGAGGTTGGCTGGAACCATTACGATACCATTAAAGA 479
Query 532 ACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGAAGCAACTCAA 591
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 480 ACTTGAGACAAAGAGAAAGGAAAAATCGCAAGTGGTGTATGAGCGTAAGAAGCAACTCAA 539
Query 592 CAAGCTCAGGACCAAGGCAGAGAAGGTTGCGGAAGAGAGGCTCGGATCACAGCTAGATGT 651
|||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 540 CAAGCTCAGGGCCAAGGCAGAAAAGGTTGCGGAAGAGAAGCTCGGATCACAGCTCGATGT 599
Query 652 TCTTGCCCCGGTCAAGTATT 671
|||||||||||| |||||||
Sbjct 600 TCTTGCCCCGGTTAAGTATT 619
> Ahg930609 jgi|Araly1|930609|scaffold_303066.1
Length=661
Score = 676 bits (366), Expect = 0.0
Identities = 548/635 (86%), Gaps = 16/635 (3%)
Strand=Plus/Plus
Query 48 agaagaTGGTGTCTGGGTCAGGGATATGCGCGAAGCGCGTTGTCGTCGACGGGCGACACC 107
|||||||||||||||||||||||||||| | ||||| ||||| || |||| || ||||
Sbjct 16 AGAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTTGTGGTTGACGCACGTCACC 75
Query 108 ACATGCT-TGGTCGTCTAGCTTCCAACACTGCGAAGGAGTTACTTAACGGACAGGAAGTG 166
| ||| | ||||||||| ||||| | ||| || || || || || || ||||| | ||||
Sbjct 76 ATATG-TGTGGTCGTCTTGCTTCGATCACAGCTAAAGAATTGCTCAATGGACA-G-AGTG 132
Query 167 --GTTGTTGTCCGATGTGAAGAGATTTGTCTCTCGGGAGGTTTGGTTCGACAAAAGATGA 224
|| ||||| |||||||| ||||||||| | || || ||||||||||| || |||||||
Sbjct 133 TTGTCGTTGTTCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAAGATGA 192
Query 225 AGTACATGAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACT 284
|||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 193 AGTACATGAGGTTTCTTAGGAAACGTATGAACACTAAACCTTCTCATGGTCCTATTCA-T 251
Query 285 TT-CGTGCTCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACC 343
|| |||||||| || |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 252 TTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACC 311
Query 344 AAGCGTGGTGCTGCTGCACTTGCTCGCTTGAAGGTTTTTGAGGGAATCCCACCTCCTTAC 403
||||||||||||||||| ||||| || |||||||||||||||||| | |||||||||||
Sbjct 312 AAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTTTTTGAGGGAGTACCACCTCCTTAT 371
Query 404 GACAAGATTAAGAGAATGGTTATTCCTGATGCTCTTAAGGTTTTGAGACTTCAGAG-TGG 462
|||||| | ||||||||||| |||||||||||||| ||||| ||||| |||||| | |||
Sbjct 372 GACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAG-GCTGG 430
Query 463 TCACAAGTACTGCTTATTGGGACGT-TTATCTTCTGAGGTTGGCTGGAACCATTATGATA 521
||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 431 TCACAAGTACTGCTTGTTGGGACGTCTT-TCTTCTGAAGTTGGCTGGAACCATTATGATA 489
Query 522 CCATTAAAGAACTTGAGAC-AAAGAGAAAGGAAAGATCACAAG-TGATGTATGAGCGTAA 579
||||||| || |||||| ||| |||||||| || ||||||| || |||||||||||||
Sbjct 490 CCATTAAGGAGCTTGAGGTGAAA-AGAAAGGAGAGGTCACAAGCTG-TGTATGAGCGTAA 547
Query 580 GAAGCAACTCAACAAGCTCAGGACCAAGGCAGAGAAGGTTGCGGAAGAGAGGCTCGGATC 639
|||||||||||||||||||||| | ||||| ||||||||||| || |||| || |||||
Sbjct 548 GAAGCAACTCAACAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATC 607
Query 640 ACAGCTAGATGTTCTTGCCCCGGTCAAGTATTGAA 674
||||| ||||||||||| ||| | ||||| ||||
Sbjct 608 CCAGCTCGATGTTCTTGCACCGATTAAGTACTGAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5