BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13180.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497078 jgi|Araly1|497078|fgenesh2_kg.9__43__AT4G13180.1 1448 0.0
> Ahg497078 jgi|Araly1|497078|fgenesh2_kg.9__43__AT4G13180.1
Length=903
Score = 1448 bits (784), Expect = 0.0
Identities = 863/902 (96%), Gaps = 2/902 (0%)
Strand=Plus/Plus
Query 32 AAATGGAGAATAATCCAAGAAGCTCATCGTCTCTCCCTCTAGCCGGGCGTGTAGCTATAG 91
|||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1 AAATGGAGAAGAATCTAAGAAGCTCATCGTCTCTCCCTTTGGCCGGGCGTGTAGCTATAG 60
Query 92 TGACCGGAGCCACCAGAGGCATGGGCCGTGAAATCGCGATTCACCTCCACTCTCTTGGTG 151
|||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 61 TGACTGGAGCCACAAGAGGCATGGGCCGTGAAATCGCGATTCATCTTCACTCTCTTGGCG 120
Query 152 CAAGAGTCACCATCAATTATGTCTCGAGCTCATCAAAAGCTGAACTCTTGGTTTC-AGAA 210
||||||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||
Sbjct 121 CAAGAGTCACCATCAATTATGTCTCGAGCTCGTCAAAAGCTGAACTCTTGG-TGCAAGAA 179
Query 211 CTAAACGACTCATCTCAATTAAAGTCAGCGATCGCAGTTAAAGCAGATGTGTCAGACCCG 270
|||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct 180 CTAAACGACTCATCTCAACCAAAGTCAGCGATCGCAGTTAGAGCAGATGTATCAGACCCG 239
Query 271 GACCAGATCAACAACTTGTTTGATCAAACAGAACAAGAGTTCGGATCTAAAGTTCACATC 330
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACCAAATCAACAACTTGTTTGATCAAACAGAACAAGAGTTCGGATCTAAAGTTCACATC 299
Query 331 GTCGTGAATTGTGCAGGTGTTTTGGATCCAAAGTATCCATCTTTATCCGAGACGACACTA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 GTCGTGAATTGTGCAGGTGTTTTGGATCCAAAGTATCCATCTTTATCCGAGACCACACTA 359
Query 391 GAAGATTTCGATAACACATTCACAATAAACACAAGAGGGTCTTTCTTGTGTTGCAAGGAA 450
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 GAAGATTTCGACAAAACATTCACAATAAACACAAGAGGCTCTTTCTTGTGTTGCAAGGAA 419
Query 451 GCAGCTAAAAGGGTTATGAGAGGAGGTGGTGGAAGAATCATTATGATGTCTACATCAATG 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCAGCTAAAAGGGTTATGAGAGGAGGTGGTGGAAGAATCATTATGATGTCTACATCAATG 479
Query 511 GTTGGTGGTCTCGCCCCGGGTTATGGAGTTTACGCAGCATCAAAGGCCGCCGTTGAGACA 570
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 GTTGGTGGTCTTGCCCCGGGTTATGGAGTTTACGCAGCATCAAAGGCCGCCGTGGAGACA 539
Query 571 ATGGTGAAAGTGTTGGCGAAGGAGCTTAAGGGAAGCCGGATAACCGCGAATTGCGTGGCG 630
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 ATGGTGAAAGTGTTGGCAAAGGAGCTAAAGGGAAGCCGGATAACCGCGAATTGCGTGGCG 599
Query 631 CCAGGGCCGGTTGCGACGGAGATGTTTTATGCTGGAAAGAGTGATGAAACGGTGAAAATG 690
|||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 600 CCAGGGCCGGTTGCAACGGAGATGTTTTATGCCGGAAAGAGTGATGAAATGGTGAAGATG 659
Query 691 CTTGCAGGGGCTTGTCCTATGGGGAGGATCGGTGAGTCAAAGGATATAACCGAGATTGTA 750
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 660 CTTGCAGGGGCTTGTCCTATGGGGAGGATTGGTGAGTCAAAGGATATTACCGAGATTGTA 719
Query 751 GGGTTTTTGGCCGGTGATGGTGGTGAATGGATTAACGGTCAAGTTATTAGAGCCAATGGA 810
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 720 GGGTTTTTGGCCGGTGATGGTGGGGAATGGATCAATGGTCAAGTTATTAGAGCCAATGGA 779
Query 811 GGCTTTGTTGTCTAATAAATGAAGAACTAACATTGGAATTTGATGTTGTCTTCTTCTTTT 870
||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 780 GGCTTTGTTGTCTAAAAAATGAAGAACTAACAATGAAATTTGATGTTGTCTTCTTCTTTT 839
Query 871 CGTGTGTTGATCTACTTTTATGTCAATGATGATGAGTTGTTTATTGGGCAAGACAATACT 930
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGTGTGTTGAACTACTTTTATGTCAATGATGATGAGTTGTTTATTGGGCAAGACAATACT 899
Query 931 TA 932
||
Sbjct 900 TA 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5