BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13190.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333010 jgi|Araly1|333010|fgenesh1_pm.C_scaffold_9000038 987 0.0
> Ahg333010 jgi|Araly1|333010|fgenesh1_pm.C_scaffold_9000038
Length=1218
Score = 987 bits (534), Expect = 0.0
Identities = 657/714 (92%), Gaps = 18/714 (3%)
Strand=Plus/Plus
Query 472 CTAGATGTTGTAGTAGGACAACAACCATTGGATTGGAACTCTCGGATAAGGATTGCCTTA 531
|||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 508 CTAGATGTTGGAGCGGGACAACAACCACTGGATTGGAACTCTCGGATAAGGATTGCCTTA 567
Query 532 GGAGCCGCAAAAGGGCTCGAATATCTCCACGAAAAGGCAAACCCTCCGGTGATATATCGA 591
||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct 568 GGAGCCGCAAAAGGGCTTGAGTATCTCCACGAGAAGGCAAACCCTCCAGTGATATATCGA 627
Query 592 GATTTCAAATCGTCAAATATATTGCTTAATGTAGATTTTGATGCAAAACTATCAGATTTT 651
||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 628 GATTTCAAATCGTCAAATATATTGCTTAACGGAGATTTGGATGCAAAACTATCAGATTTC 687
Query 652 GGTTTGGCAAAACTTGGTTCGGTTGGGGACACACAAAATGTATCTTCCCGAGTAGTGGGA 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 688 GGTTTGGCAAAACTTGGTTCGGTTGGGGACACACAAAATGTATCTTCCCGAGTAGTGGAA 747
Query 712 ACTTATGGTTATTGCGCTCCTGAGTATCACAAAACCGGTCAGCTGACGGTTAAATCTGAT 771
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 748 ACTTACGGTTATTGCGCTCCTGAGTATCATAAAACCGGTCAGTTGACGGTTAAATCTGAT 807
Query 772 GTATATAGTTTTGGGGTTGTGTTGTTGGAACTCATAACCGGTAAGCGAGTTATCGACACA 831
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 808 GTATATAGTTTTGGAGTTGTGCTGTTAGAACTCATAACCGGTAAGCGAGTTATCGATACA 867
Query 832 ACGAGACCATGTCATGAACAAAATCTGGTTACTTGGGCACAACCGATTTTCAGAGAACCA 891
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 868 ACGAGACCAAGTCATGAACAAAATTTGGTTACTTGGGCACAACCGATTTTCAGAGAACCA 927
Query 892 AATAGATTCCCCGAGCTAGCGGATCCACTTCTTCAAGGGGAGTTCCCGGAAAAAAGTTTG 951
||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||||||
Sbjct 928 AATAGATTCCCAGAGCTAGCGGACCCACTTCTTCGAGGCGAGTTCCCGGAAAAAAGTTTG 987
Query 952 AACCAAGCTGTAGCAATAGCGGCAATGTGTCTACAAGAAGAACCAATAGTTCGACCTTTA 1011
||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 988 AACCAAGCTGTAGCAGTAGCGGCAATGTGTCTGCAAGAAGAACCAATAGTGCGACCATTA 1047
Query 1012 ATCAGTGATGTTGTCACCGCCTTAAGTTTTATGAGTACAGAA-ACCGGTTCACCTTCCGG 1070
||||||||||| |||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1048 ATCAGTGATGTCGTCACCACCTTAAGTTTTATGAGTACA-AACACCGGTTCACCTTCCGG 1106
Query 1071 TCTAACGGG-AAC-CGCT---C-TT----AACCCTTTATCTCCTAAGACCGTGGAGGACC 1120
| |||| | ||| | || | || |||| ||||||| ||||||| ||||||||||
Sbjct 1107 TATAACCGATAACGCCCTGAACCTTTTTCAACC-TTTATCTTCTAAGACAGTGGAGGACC 1165
Query 1121 AGGGC-TGGCTTCAATGTGAGTC--T-CCAAGAGATGTGTACTCGTTACTATAA 1170
||| | || |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1166 AGGACGTG-CTTCAATGTGAGTCAGTTCCAAGAGATGTGTACTCGTTACTATAA 1218
Score = 743 bits (402), Expect = 0.0
Identities = 457/484 (94%), Gaps = 1/484 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTGTTTCTTGGGTCCATCGACAAACAACAAAAGTAGGGAGAATGAAGGCTCATCT 60
||||||||||||||||||||| | || |||||||||||||| || |||||||||||||||
Sbjct 1 ATGAGTTGTTTCTTGGGTCCAACTACGAACAACAAAAGTAGAGAAAATGAAGGCTCATCT 60
Query 61 ATGGCTGCTCCTTATGAACAACAAAACCTACCACGGAATGATCGTAGGCAGATAACAACA 120
|||||||||||||| |||||||||||||| | |||||||||| | |||||||||||||
Sbjct 61 TTGGCTGCTCCTTATCAACAACAAAACCTAGCTTGGAATGATCGGAAGCAGATAACAACA 120
Query 121 TGGGAAGCGGTGGGAACGAACAAAGAATCACCGAAAAATATCAAGGCAAAGAGTTTCAAA 180
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TGGGAAGCGGTGGGAATGAACAAAGAATCACCGAAAAATATCGAGGCAAAGAGTTTCAAA 180
Query 181 TTTCGTGAATTAGCAACCGCTACAAATAGTTTCAGGCAAGAGTTCTTGATCGGAGAAGGA 240
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 TTTCGTGAATTAGCTACCGCGACAAACAGTTTCAGGCAAGAGTTCTTGATTGGAGAAGGA 240
Query 241 GGGTTTGGGAGGGTTTACAAAGGAAAGATGGAGAAGACAGGACAGGTGGTAGCTGTGAAG 300
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGGTTTGGGAGGGTTTACAAGGGAAAGATGGAGAAGACAGGACAGGTGGTGGCTGTGAAG 300
Query 301 CAACTTGACCGTAATGGATTACAAGGGAATAGAGAGTTTCTGGTAGAGATCTTCAGGTTA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACTTGACCGTAATGGATTACAAGGGAATAGAGAGTTTCTGGTAGAGATCTTCAGGTTG 360
Query 361 AGTCTTCTTCATCATCCCAACCTTGCCAATCTCATTGGATATTGCCTTGATGGAGACCAG 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTCTTCTTCATCATCCCAATCTTGCCAATCTCATTGGATATTGCCTTGATGGAGACCAG 420
Query 421 AGACTTCTTGTTCACGAGTTCATGCCTCTTGGTTCCCTTGAAGATCATCTCCTAGA-TGT 479
|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| | |
Sbjct 421 AGACTTCTTGTTTACGAGTTCATGCCTCTTGGTTCCCTAGAAGACCATCTCCTAGAATTT 480
Query 480 TGTA 483
||||
Sbjct 481 TGTA 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5