BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13195.1

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333009 jgi|Araly1|333009|fgenesh1_pm.C_scaffold_9000037           462    1e-129


> Ahg333009 jgi|Araly1|333009|fgenesh1_pm.C_scaffold_9000037
Length=336

 Score =  462 bits (250),  Expect = 1e-129
 Identities = 311/340 (91%), Gaps = 5/340 (1%)
 Strand=Plus/Plus

Query  176  ATGGCAACTACAATTGATCAAACCAGCATCAAGTCATTGCATTTCCATCAAGTCATCCGT  235
            |||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||
Sbjct  1    ATGGCAACTACAATTGATCAAACCAGCATCAAGTCACTGCATCTCAATCAACTCATCTGT  60

Query  236  TTGATCATCACAATCATCTTCTTAGCTTTCTTAT-TTCTCATTGGCCCTACAAGTTCCAT  294
            || ||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||
Sbjct  61   TTCATCATCACAATCATCTTCTTAGCTTTCTT-TGTTCTCATTAGCCCTACAAGTTCAAT  119

Query  295  GAATCATCACCTTCATGAATCCTCATCTAAGAACACTATGGCTCCTTCCAAGAGGTTCCT  354
            || ||||||||| |||||||||||||||||||| ||||   |||||||||||||||||||
Sbjct  120  GAGTCATCACCTCCATGAATCCTCATCTAAGAATACTAAAACTCCTTCCAAGAGGTTCCT  179

Query  355  TCTACAACCTTCCACTCCATCTTCATCTACTATGAAAATGCGTCCAACAGCTCACCCTAG  414
            |||||||||||| |||||||||||||| ||||||||  ||||||||||| ||||| ||||
Sbjct  180  TCTACAACCTTCGACTCCATCTTCATCCACTATGAATTTGCGTCCAACAACTCACACTAG  239

Query  415  ACGCAGTGGCACTTCTTCTTCTTCGGCGAGGAAGAGGAGGAGAGAGTTCAGAGCTGAAGC  474
            ||| ||| ||| |||||||||||   ||||||||||||||||||||||| ||||||||||
Sbjct  240  ACGGAGTCGCAGTTCTTCTTCTT---CGAGGAAGAGGAGGAGAGAGTTCGGAGCTGAAGC  296

Query  475  TCATGAGGTTCCAAGTGGTCCAAACCCTATCTCCAACTAG  514
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCATGAGGTTCCAAGTGGTCCAAACCCTATCTCCAACTAG  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29812121094


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5