BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13200.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497076 jgi|Araly1|497076|fgenesh2_kg.9__41__AT4G13200.1 808 0.0
> Ahg497076 jgi|Araly1|497076|fgenesh2_kg.9__41__AT4G13200.1
Length=690
Score = 808 bits (437), Expect = 0.0
Identities = 625/712 (88%), Gaps = 27/712 (4%)
Strand=Plus/Plus
Query 33 agagacagagagagagaTGAGTAGCTTCACGATTCCATCTCCTTCCTCCTTCTCTCTTTC 92
||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAAAGAGAGAAATATGAGCAGCTTCACGATTCCATCTCCTTCCTCCTTCTCTCTTTC 60
Query 93 CAATTCATATAATCAAACCTCTCCTCATTCCTTCACTCTCCGCAATTCTCGTTCCAATTT 152
|||||| ||| ||||| |||||| |||| |||||| || |||||||||||||||||||||
Sbjct 61 CAATTCCTATTATCAACCCTCTCGTCATCCCTTCATTCCCCGCAATTCTCGTTCCAATTT 120
Query 153 TGAGTTCCACCGGTTACGATTAGATGTGGAGTCTCGAAGAAGAAGCACTTCTTTACGGT- 211
||| | | | | ||||||| ||| ||| |||||||||||||||||||||||||||
Sbjct 121 TGA-AT-C-TC-G--CCGATTAGCTGTCGAGGCTCGAAGAAGAAGCACTTCTTTACGGTG 174
Query 212 C--CAATTGCTCCACCAAAGGTACAGATTCAGGTGAAAATGAGAACAAAAGTGTGTTAGA 269
| ||| | |||| | ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 175 CAGCAA-AG--GCACCCACGGTTCAGATTCAGGTGAAAATGAGAACAGAAGTGTGTTAGA 231
Query 270 TGCTTTCTTTTTGGGGAAAGCATTAGCTGAGGTTATCAATGAGAGAATTGAGTCTACTGT 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 232 TGCTTTCTTTTTGGGGAAAGCATTAGCTGAGGTTATCAATGAGAGAATTGAGTCCACTGT 291
Query 330 TGGAGAAGTGTTGAGTACTATTGGAAAGTTTCAAGCTGAGCAACAGAAACAAGTTCAAGA 389
||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 292 TGGAGAAGTTTTGGGTACTATTGGAAGGTTTCAAGCTGAGCAACAGAAGCAAGTTCAAGA 351
Query 390 GATTCAGGAAGAGGTTCTTGAAAGAGCTAAGAAAGCTAAGGAAAGAGCAGCTCGAGAAAC 449
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 352 GATTCAGGAAGAGGTTCTTGAAAGAGCTAAGAAAGCTAAGGAAAGAGCGGCTCGAGAAAC 411
Query 450 TATGGAGGAACAAGGACTTGTTGCTTCCAAACCAGTAGCCATTACTCGAAATCCGGATGC 509
| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |||
Sbjct 412 CAAGGAGGAACAAGGACTTGTTGCTTCCAAACCAGCAGCCATTACCCGAAAACCGGCTGC 471
Query 510 TGTTGTTGTTGCCTCTGTAACTTCTACATCGACCGTTGAGAGCAAGACTATAATGGTTGA 569
|| |||||| ||||||||||| |||||||||| ||||||||||| |||||||||| ||
Sbjct 472 TGGCGTTGTTACCTCTGTAACTCCTACATCGACTGTTGAGAGCAACACTATAATGGGTGG 531
Query 570 TGTAGAGGAAAGCTCGAGTTCCAGTGATGAAGACTGA-ACGATGGTTTCAAGGGTTTAAG 628
||||| ||||||||||||||| |||||||||||||| ||| | | ||| ||| |
Sbjct 532 TGTAGTGGAAAGCTCGAGTTCTAGTGATGAAGACTGTTACG-T--TA--AAGA-TTTG-G 584
Query 629 TTGAAGATTTGGTAATAGCAGCAGAGACTTGTCTAAAAGGGTTAAGATATATGTACTTGA 688
| || | | | ||||| |||||||||||| ||| |||| ||||| ||||||| ||
Sbjct 585 T--AATA---GC-AGCAGCAG-AGAGACTTGTCTGAAACGGTTGAGATACATGTACTGGA 637
Query 689 AAAAACGATGTAAACAATGTAAGTTGATATAAATCAAGGTTAAACCAGCATT 740
| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 638 AGAAACGATGTAAACAATGAAAGTTGATATAAATCAAGGTTAAACCAGCATT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5