BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13215.1 Length=537 Score E Sequences producing significant alignments: (Bits) Value Ahg497072 jgi|Araly1|497072|fgenesh2_kg.9__37__AT4G13215.1 366 8e-101 > Ahg497072 jgi|Araly1|497072|fgenesh2_kg.9__37__AT4G13215.1 Length=486 Score = 366 bits (198), Expect = 8e-101 Identities = 338/401 (84%), Gaps = 28/401 (7%) Strand=Plus/Minus Query 1 CCTTCAGGGTTCATGAAAGTTTGTTGTTTGGGGATTTTCCTGAGCCTGC-TTCGCCAGAT 59 ||||||||||||||||| |||||||||||||||| |||||||||||||| || | |||| Sbjct 486 CCTTCAGGGTTCATGAATGTTTGTTGTTTGGGGA-TTTCCTGAGCCTGCGTT-TCTAGAT 429 Query 60 TCTACTTGTAGTTCTTGATTTTGGTGGTAAAAACATATCTGGTGGTT-T-CCCTGAGTTT 117 | ||||||||| |||||||||||||||| | || | | || | || || || Sbjct 428 TGTACTTGTAGCTCTTGATTTTGGTGGT------TTCCCT-GAGTTTATAACC-AAGCTT 377 Query 118 ATACCCAAGTTTAAAGGAGCTTGATTTGTCAAGTAACATGTTTGAGGGTGTTGTTCCTGA 177 | | | || || | |||||||||||||||||||||||||||||| || |||||| ||| Sbjct 376 A-A---AGGTCTATATGAGCTTGATTTGTCAAGTAACATGTTTGAGAGTATTGTTCTTGA 321 Query 178 GGGGATTGACTCTGTTAAAACTCGAAAAACATAAACCTTTCTGACAATAACTTCACTGGA 237 | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 320 -GAGATTGACTCTGTTAAAACTCGAAAAACTTAA-CCTTTCTGACAATAACTTCACTGGG 263 Query 238 GTATTACCAAGTTTTGGTGGATTAAAACTTG----T-----CTTTGAAGGGAACAGTCCA 288 ||||| |||||||||||||||| |||| ||| | ||||||||||||||||||| Sbjct 262 GTATTGCCAAGTTTTGGTGGATAAAAATTTGGGGCTGAAGTCTTTGAAGGGAACAGTCCA 203 Query 289 AGTCTTTGTGGGTTAGCTATAAAACCCGGTCTAGGTTCCTCTAGTTTGCGAGCAACTGCT 348 ||||||||||||||| || ||||||| |||||||||||||||| ||| || |||||||| Sbjct 202 AGTCTTTGTGGGTTACCTTTAAAACCATGTCTAGGTTCCTCTAGGTTGAGAACAACTGCT 143 Query 349 GTTGCTGGTCTTGTGATAGGTTTAATGACCAGTATTGTAGT 389 |||||||||||||||||||||||||||||| | |||||||| Sbjct 142 GTTGCTGGTCTTGTGATAGGTTTAATGACCGGGATTGTAGT 102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19573817157 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5