BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13215.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497072 jgi|Araly1|497072|fgenesh2_kg.9__37__AT4G13215.1           366    8e-101


> Ahg497072 jgi|Araly1|497072|fgenesh2_kg.9__37__AT4G13215.1
Length=486

 Score =  366 bits (198),  Expect = 8e-101
 Identities = 338/401 (84%), Gaps = 28/401 (7%)
 Strand=Plus/Minus

Query  1    CCTTCAGGGTTCATGAAAGTTTGTTGTTTGGGGATTTTCCTGAGCCTGC-TTCGCCAGAT  59
            ||||||||||||||||| |||||||||||||||| |||||||||||||| ||  | ||||
Sbjct  486  CCTTCAGGGTTCATGAATGTTTGTTGTTTGGGGA-TTTCCTGAGCCTGCGTT-TCTAGAT  429

Query  60   TCTACTTGTAGTTCTTGATTTTGGTGGTAAAAACATATCTGGTGGTT-T-CCCTGAGTTT  117
            | ||||||||| ||||||||||||||||       |  || | | || |  ||  || ||
Sbjct  428  TGTACTTGTAGCTCTTGATTTTGGTGGT------TTCCCT-GAGTTTATAACC-AAGCTT  377

Query  118  ATACCCAAGTTTAAAGGAGCTTGATTTGTCAAGTAACATGTTTGAGGGTGTTGTTCCTGA  177
            | |   | || || | |||||||||||||||||||||||||||||| || |||||| |||
Sbjct  376  A-A---AGGTCTATATGAGCTTGATTTGTCAAGTAACATGTTTGAGAGTATTGTTCTTGA  321

Query  178  GGGGATTGACTCTGTTAAAACTCGAAAAACATAAACCTTTCTGACAATAACTTCACTGGA  237
             | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| 
Sbjct  320  -GAGATTGACTCTGTTAAAACTCGAAAAACTTAA-CCTTTCTGACAATAACTTCACTGGG  263

Query  238  GTATTACCAAGTTTTGGTGGATTAAAACTTG----T-----CTTTGAAGGGAACAGTCCA  288
            ||||| |||||||||||||||| |||| |||    |     |||||||||||||||||||
Sbjct  262  GTATTGCCAAGTTTTGGTGGATAAAAATTTGGGGCTGAAGTCTTTGAAGGGAACAGTCCA  203

Query  289  AGTCTTTGTGGGTTAGCTATAAAACCCGGTCTAGGTTCCTCTAGTTTGCGAGCAACTGCT  348
            ||||||||||||||| || |||||||  |||||||||||||||| ||| || ||||||||
Sbjct  202  AGTCTTTGTGGGTTACCTTTAAAACCATGTCTAGGTTCCTCTAGGTTGAGAACAACTGCT  143

Query  349  GTTGCTGGTCTTGTGATAGGTTTAATGACCAGTATTGTAGT  389
            |||||||||||||||||||||||||||||| | ||||||||
Sbjct  142  GTTGCTGGTCTTGTGATAGGTTTAATGACCGGGATTGTAGT  102



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5