BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13220.1

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915101 jgi|Araly1|915101|Al_scaffold_0009_70                      843    0.0  


> Ahg915101 jgi|Araly1|915101|Al_scaffold_0009_70
Length=540

 Score =  843 bits (456),  Expect = 0.0
 Identities = 497/517 (96%), Gaps = 2/517 (0%)
 Strand=Plus/Plus

Query  54   TCTTTGAATCCTTCGCCTCTCGCTCCAAGATTCTTACAAACCCTAACCCAATTCCCCAAT  113
            |||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct  25   TCTTTGAATCCTTCGCCTCTTGCTCCAAGCTTCTTACAAACCCTAACCCAATTCTCAAAT  84

Query  114  TCTCCATTCCTCTCTCCATGCTCTGTTTTGAAGTTAAAAAACGCATCTTTACTCAACTTG  173
            ||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||
Sbjct  85   TCTCCGTTCCTCTCTCCATGCTCGGTTTTGAAGTTAAAAAACGCATCTTTGCTGAATTTG  144

Query  174  AGAACTCGAATTGCTCCTCTTCAA-CCACAACGACTTCGGTCCAAAACCCTTGTTTTGTC  232
            |||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct  145  AGAACTCGAATTGCTCCTCTTCAATCC-CAACGAGTTCGGTCCAAAACCCTTGTTTTGTC  203

Query  233  TGCTCAGTCCAGTTTCTTGAAAGTTCTTAGAACTGCGTGGAATATTGGGAAAGATGGAAT  292
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  204  TGCTCAGTCCAGTTTCTTGAAAGTTCTTAGAACCGCGTGGAATATTGGGAAAGATGGAAT  263

Query  293  TGAAGCTGGAACCAATCTTGTACCTGTTTCTGTGCCTAGACCAGTAGCGAGAATCTCTGT  352
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  264  CGAAGCTGGAACCAATCTTGTACCTGTTTCTGTGCCTAGACCAGTAGCTAGAATCTCGGT  323

Query  353  GACAATTGCAGCATTGGCGGTTTCGTTGTTTGTTGTCAAGTCGTTTCTATCGACAGCTTT  412
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  324  GACAATTGCAGCATTGGCGGTTTCGTTGTTTGTTGTCAAGTCGTTTCTATCAACCGCTTT  383

Query  413  CTTTGTATTGGGTACAATGGGATTTGCATATTTCTTATTCATAGCTTTAAACAAAGATGA  472
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  384  CTTTGTATTGGGTACAATGGGATTTGCATATTTCTTATTCATAGCCTTAAACAAAGATGA  443

Query  473  AGCTCCTAAACTAAGAGGAGATGATAATAGCTCTGGTTCTAAGTCAATGGATGATCCACT  532
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  444  AGCTCCTAAACTAAGAGGAGATGATAATAGCTCTGGTTCTAAGCCAATGGATGATCCACT  503

Query  533  TGAAGAAGCAAAGAAAATCATGGACAAGTACAAGTAA  569
            |||||||||||||||||||||||||||||||||||||
Sbjct  504  TGAAGAAGCAAAGAAAATCATGGACAAGTACAAGTAA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26190443979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5