BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13230.1

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333002 jgi|Araly1|333002|fgenesh1_pm.C_scaffold_9000030           353    7e-97


> Ahg333002 jgi|Araly1|333002|fgenesh1_pm.C_scaffold_9000030
Length=429

 Score =  353 bits (191),  Expect = 7e-97
 Identities = 201/206 (98%), Gaps = 0/206 (0%)
 Strand=Plus/Plus

Query  209  ACGAAGGGGCACAGACGATCTCCGATGCGGCGGGTAACTTGAAGGATAAGGCAAAGAACA  268
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  224  ACGAAGGGGCACAGACGATCTCGGATGCGGCGGGTAACTTGAAGGATAAGGCAAAGAACA  283

Query  269  CTGCAGAGGAGGCCTGGGATAAGGTGAAGGACACTACGGAGAAGATCAAAGATACGGTCA  328
            ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  284  CTGCAGAGGAGGCATGGGATAAGGTGAAGGACACTACGGAGAAGATCAAAGACACGGTCA  343

Query  329  CCGGAAAAACTGAGGAAACTAAGGAGTCTATTAAAGCCACAGCCAAGACCGTTGAGAGAA  388
            ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct  344  CCGGAAAAACTGAGGAAACCAAGGAGTCTATTAAAGCCACAGCCAAGACCGTCGAGAGAA  403

Query  389  GCATGAACACCAAGAACCTCAAATAA  414
            ||||||||||||||||||||||||||
Sbjct  404  GCATGAACACCAAGAACCTCAAATAA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22053930442


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5