BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13240.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359012 jgi|Araly1|359012|fgenesh1_pg.C_scaffold_9000052 2494 0.0
Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183 1164 0.0
> Ahg359012 jgi|Araly1|359012|fgenesh1_pg.C_scaffold_9000052
Length=1548
Score = 2494 bits (1350), Expect = 0.0
Identities = 1488/1555 (96%), Gaps = 8/1555 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCCATCGTTGGAACGAGGAATAAGCATCACGAGTTCATTCAATCTT-GATAGAAT 59
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1 ATGGTTCCATCGTTGGAACGAGGAATAAGCATTTCGAGTTCATTCAAT-TTAGATAGAAT 59
Query 60 GTTTGATTCCTCACCGGGAAAAGAACAACAACAACCTCATCTCGCGGAAACAACCATGCC 119
||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 60 GTTCGATTCCTCACCGGGAAAAGAACAACAACAAGCTCATCTCGTGGAATCAACCATGCC 119
Query 120 GGAGAGTCAAACTCAAGACAGCCTCGGTGGAAGTCCCGTGGAGACTAGCCGCCCGATGAC 179
||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGAAAGTCAAAATCAAGAAAGCCTCGGTGGAAGTCCCGTGGAGACTAGCCGCCCGATGAC 179
Query 180 TTCTCGTCTGATTTCCCGTAGACAGGACAAGCAACAATCCGAGACGGAGATGATGAAAGA 239
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 180 TTCCCGTCTGATTTCCCGTAGACAAGACAAGCAACAATCCGAAACGGAGATGATGAAAGA 239
Query 240 TAGATTCACGAAATTACTTCTTGGAGAAGATATGTCTGGTGGTGGTAAAGGTGTATCTTC 299
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 240 TAGATTCACAAAATTACTTCTGGGAGAAGATATGTCAGGTGGTGGTAAAGGTGTATCTTC 299
Query 300 TGCTTTGGCACTATCAAATGCCATCACGAATCTAGCCGCGTCAATATTCGGGGAACAGAC 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 300 TGCTTTGGCACTATCAAATGCCATCACAAATCTAGCCGCGTCAATATTCGGGGAACAAAC 359
Query 360 AAAGTTGCAGCCGATGGCACCGGATAGACGAGCGAGGTGGAAGAAAGAGATCGATTGGTT 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 360 AAAGTTGCAGCCGATGGCACCGGATAGGCGAGCGAGGTGGAAGAAAGAGATCGAATGGTT 419
Query 420 GTTGTCCGTGACTGATCACATCGTCGAGTTTGTTCCATCTCAACAGATTAGTAAGGAAGG 479
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTGTCTGTAACTGATCACATCGTCGAGTTTGTTCCATCTCAACAGATTAGTAAGGAAGG 479
Query 480 AGTCTGCACCGAGATTATGGTGACAAGACAAAGAGGTGATCTCCTCATGAACATCCCTGC 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 480 AGTCTGCACCGAGATTATGGTTACAAGACAAAGAGGTGATCTCCTCATGAACATCCCGGC 539
Query 540 CCTTCGCAAACTCGACGCCATGCTCATTGATACATTGGACAATTTTAGAGGACACAATGA 599
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCTCCGCAAACTCGATGCCATGCTCATTGATACATTGGACAATTTTAGAGGACACAATGA 599
Query 600 GTTTTGGTATGTATCGAGAGATTCAGAAGAAGGGAAACAAGCACGGAATGAGAGGACAAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTTTGGTATGTATCGAGAGATTCAGAAGAAGGGAAACAAGCACGGAATGAGAGGACAAA 659
Query 660 GGACAAGTGGTGGCTTCCTCCGGTTAAAGTCCCTCCTAATGGCTTGTCCGAATCAGCCCG 719
||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 660 GGACAAGTGGTGGCTTCCTCCAGTGAAAGTCCCTCTTAATGGCTTGTCCGAATCAGCCCG 719
Query 720 AAGAATGCTTCATTTTCAAAAAGATTCAGTCTCACAAGTCCAAAAAGCCGCCATGGCTAT 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 AAGAATGCTTCATTTTCAAAAAGATTCGGTCTCACAAGTCCAAAAAGCCGCCATGGCTAT 779
Query 780 TAACGCGCAAGTTCTGTCAGAAATGGCTATCCCTGATAGCTATATCGAGTCTCTTCCAAA 839
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TAATGCGCAAGTTCTATCAGAAATGGCTATCCCTGATAGCTATATTGAGTCTCTTCCAAA 839
Query 840 GAATGGAAGAGTAAGCCTTGGGGATTCGTTATACAAGAGCATAACAGAAGAGTGGTTTGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAATGGAAGAGTAAGCCTTGGGGATTCGTTATACAAGAGCATAACAGAAGAGTGGTTTGA 899
Query 900 TCCAGAGCAGTTCTTGTCAACACTTGACTTATCTACAGAGCACAAAGTGTTGGATGTGAA 959
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 TCCAGAGCAGTTCTTGTCCACACTTGACTTGTCTACAGAGCACAAAGTGTTGGATGTGAA 959
Query 960 GAATAGGATTGAGGCCTCAATCGTTATATGGAAAAGAAAACTTCATCTAAAAGACAACAA 1019
||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 960 GAACAGGATCGAGGCATCAATTGTTATATGGAAAAGGAAACTTCATCTAAAAGATAACAA 1019
Query 1020 ATCTTCTTGGGGATCAGCTGTGAGCTTGGAGAAACGAGAGTTGTTCGAAGAGAGAGCCGA 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 ATCTTCTTGGGGATCAGCTGTGAGTTTGGAGAAACGAGAGTTGTTCGAAGAGAGAGCCGA 1079
Query 1080 GACGATCTTGGTCTTGCTTAAACAAAAGTTCCCTGGTCTTCCCCAATCTTCCCTTGACAT 1139
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1080 GACCATCTTGGTCTTGCTTAAACAAAAGTTCCCTGGTCTTCCTCAATCTTCACTTGACAT 1139
Query 1140 TTCCAAAATTCAGTATAACAAGGATGTGGGACATGCGGTTTTGGAGAGCTACTCAAGGAT 1199
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1140 TTCCAAAATTCAGTATAACAAGGATGTTGGACACGCGGTTTTGGAGAGCTACTCGAGGAT 1199
Query 1200 ATTAGAGAGCTTAGGGTACACGGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATTAGAGAGCTTAGGGTACACGGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTC 1259
Query 1260 TTTAGCCCGGAAGCAATGCACAGGTGAAGAAACATCAGATGGTGGGAAAATAGCAACGGA 1319
||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 1260 TTTAGCCCGGAAGCAGTGCACTGGTGAAGAAACATCAGATGGTGGGAAATTAGCAACAGA 1319
Query 1320 AACGGACTCAGCGTCTGCTGGATCTTCGAACTACTCAGGAGAGGAAATAGAGAAGCTTGA 1379
||||||||| | | | | | |||||||||||||||||||||||||| ||||||||||||
Sbjct 1320 AACGGACTC-G-G-C-GA-G-ATCTTCGAACTACTCAGGAGAGGAAACAGAGAAGCTTGA 1373
Query 1380 ATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGTTGGAGTGACAATAGTTC 1439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1374 ATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGCTGGAGTGACAATAGTTC 1433
Query 1440 AAAAGGGCAGTCAGAGAAACCTCCAAAATCTCCGAGAATGACGCCAAAGAAACTCTCATA 1499
||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 1434 AAAAGGGCAATCAGAGAAACCTCCAAAATCTCCAAAAATGACGCCAAAGAAATTCTCATA 1493
Query 1500 TTTGGAGAAGCTTGAGAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1554
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TTTGGAGAAGCTTGAAAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1548
> Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183
Length=1575
Score = 1164 bits (630), Expect = 0.0
Identities = 1125/1361 (83%), Gaps = 46/1361 (3%)
Strand=Plus/Plus
Query 211 CAACAATCCGAGACGGAGATGATGAAAGATAGATTCACGAAATTACTTCTTGGAGAAGAT 270
|||||| | || | ||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 244 CAACAAGCAGATATGGAGATGATGAAAGACAGGTTCGCGAAATTACTTCTTGGAGAAGAT 303
Query 271 ATGTCTGGTGGTGGTAAAGGTGTATCTTCTGCTTTGGCACTATCAAATGCCATCACGAAT 330
||||| ||||| || |||||||||||||||||| |||| || || ||||| ||||| |||
Sbjct 304 ATGTCCGGTGGCGGGAAAGGTGTATCTTCTGCTCTGGCCCTTTCCAATGCTATCACAAAT 363
Query 331 CTAGCCGCGTCAATATTCGGGGAACAGACAAAGTTGCAGCCGATGGCACCGGATAGACGA 390
|| || ||||| |||||||||||||| |||||| | ||||||||| | | ||||||| |
Sbjct 364 CTTGCTGCGTCTATATTCGGGGAACAAACAAAGCTACAGCCGATGCCGCAAGATAGACAA 423
Query 391 GCGAGGTGGAAGAAAGAGATCGATTGGTTGTTGTCCGTGACTGATCACATCGTCGAGTTT 450
| ||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||
Sbjct 424 GTGAGGTGGAAGAAAGAGATCGATTGGTTATTGTCTGTGACCGATCACATTGTCGAGTTT 483
Query 451 GTTCCATCTCAACAGATTAGTAAGGAAGGAGTCTGCACCGAGATTATGGTGACAAGACAA 510
||||| |||||||| | || || |||||||| ||||| |||||||||||||||||||||
Sbjct 484 GTTCCTTCTCAACAAACGAGCAAAGAAGGAGTTTGCACTGAGATTATGGTGACAAGACAA 543
Query 511 AGAGGTGATCTCCTCATGAACATCCCTGCCCTTCGCAAACTCGACGCCATGCTCATTGAT 570
||||||||||| || |||||||| || || ||||| |||||||||||||||||||| |||
Sbjct 544 AGAGGTGATCTTCTTATGAACATTCCAGCTCTTCGAAAACTCGACGCCATGCTCATCGAT 603
Query 571 ACATTGGACAATTTTAGAGGACACAATGAGTTTTGGTATGTATCGAGAGATTCAGAAGAA 630
|||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 604 ACATTGGACAATTTCAGAGGACACAACGAGTTTTGGTATGTCTCTAGAGATTCAGAAGAA 663
Query 631 GGGAAACAAGC-ACGGAATGAGAGGACAAAGGACAAGTGGTGGCTTCCTCCGGTTAAAGT 689
||| | || || | ||||||| ||||||| ||||| |||||||| ||||||||||||||
Sbjct 664 GGGCAGCAGGCGA-GGAATGATCGGACAAACGACAAATGGTGGCTACCTCCGGTTAAAGT 722
Query 690 CCCTCCTA-ATGGCTTGTCCGAATCAGCCCGAAGAATGCTTCATTTTCAAAAAGATTCAG 748
||||| | || || || ||| |||| || ||||||||| | || |||||||||||||
Sbjct 723 TCCTCCCGGA-GGTTTATCTGAACCAGCTCGGAGAATGCTTTACTTCCAAAAAGATTCAG 781
Query 749 TCTCACAAGTCCAAAAAGCCGCCATGGCTATTAACGCGCAAGTTCTGTCAGAAATGGCTA 808
|| |||| || |||||||| || |||||||| || || ||||| || ||||||||||| |
Sbjct 782 TCACACAGGTTCAAAAAGCTGCAATGGCTATCAATGCTCAAGTCCTTTCAGAAATGGCAA 841
Query 809 TCCCTGATAGCTATATCGAGTCTCTTCCAAAGAATGGAAGAGTAAGCCTTGGGGATTCGT 868
| ||||| ||||| ||||| ||||| || ||||| ||||||| ||||| |||||||||
Sbjct 842 TACCTGAGAGCTACATCGACTCTCTCCCTAAGAACGGAAGAGCCAGCCTCGGGGATTCGA 901
Query 869 TATACAAGAGCATAACAGAAGAGTGGTTTGATCCAGAGCAGTTCTTGTCAACACTTG-AC 927
| ||||||||||||||||| |||||||||||||| ||||||||||| || | ||| ||
Sbjct 902 TCTACAAGAGCATAACAGAGGAGTGGTTTGATCCGGAGCAGTTCTTATCGATG-TTGGAC 960
Query 928 TTATCTACAGAGCACAAAGTGTTGGATGTGAAGAATAGGATTGAGGCCTCAATCGTTATA 987
|| || ||||| ||||||||||||||| ||||||||||||||||||| || | || ||
Sbjct 961 TTGTCGACAGAACACAAAGTGTTGGATTTGAAGAATAGGATTGAGGCATCTGTAGTGATT 1020
Query 988 TGGAAAAGAAAACTTCATCTA-AAAG-ACAACAAATCTTCTTGGGGATCAGCTGTGAGCT 1045
||||| || || ||||| | | |||| ||| ||||||||||||||| ||||| || ||||
Sbjct 1021 TGGAAGAGGAAGCTTCA-C-ACAAAGGACACCAAATCTTCTTGGGGCTCAGCAGTTAGCT 1078
Query 1046 TGGAGAA-ACGAGAGTTGTTCGAAGAGAGAGCCGAGACGATCTTGGTCTTGCTTAAACAA 1104
||||||| | |||| ||||||||||||||||| || || ||||| |||||||||||||||
Sbjct 1079 TGGAGAAGA-GAGAATTGTTCGAAGAGAGAGCAGAAACAATCTTAGTCTTGCTTAAACAA 1137
Query 1105 AAGTT-CCCTGGTCTTCCCCAATCTTCCCTTGACATTTCCAAAATTCAGTATAACAAGGA 1163
|| || ||| |||||||| ||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 1138 AAATTTCCC-GGTCTTCCTCAATCTTCCCTTGACATATCCAAGATTCAGTTTAACAAGGA 1196
Query 1164 TGT-GGGACATGCGGTTTTGGAGAGCTACTCAAGGATA-TTAGAGAGCTTAGGGT-ACAC 1220
|| ||| || ||||| |||||||| ||||| |||||| || |||||||| || | | ||
Sbjct 1197 CGTTGGG-CAAGCGGTGTTGGAGAGTTACTCTAGGATACTT-GAGAGCTT-GGCTTATAC 1253
Query 1221 GGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTCTTTAGCCCGGAAGCAA--TGC 1278
| ||||| ||||| || ||||| ||||| | ||||| || || | |||||| |
Sbjct 1254 AGTGATGTCAAGAATAGAAGATGTTCTTTACACAGATTCATTGGCACTAAAGCAAACTTT 1313
Query 1279 ACAGG-TGAAGAAACATCAGATGGTGGGAAAATAGCAACGGAAACGGACTCAGCGTCTGC 1337
| || ||||||||||||||||||||||| || |||| || ||||| || | ||| ||
Sbjct 1314 ATTGGCTGAAGAAACATCAGATGGTGGGAGAA---CAACCGAGACGGATTCCGAGTCAGC 1370
Query 1338 TGGATCTTCGAACTACTCAGGAGAGGAAATAGAGAAGCTTGAATCACAAAACTCATCAAA 1397
|||||||| |||| | ||||| |||| ||||||||||| |||| |||| |||
Sbjct 1371 GGGATCTTCTAACT-CG--GGAGAAGAAACCGAGAAGCTTGACCCACACTACTC--CAA- 1424
Query 1398 GACGACATTGCTTG-ATTTTATTGGTTGGAGTGACAATAGTTCAAAAGGGCAGTCAGAGA 1456
||| | ||| ||| ||||||| ||||||| ||| |||||||| ||||| | | | || |
Sbjct 1425 GAC--C-TTG-TTGGATTTTATGGGTTGGAATGATAATAGTTCGAAAGG-CGG-C-GATA 1477
Query 1457 AACCTCCAAAATCTCCGAGA-ATGACGCCAAAGAAA-CTCTCATATTTGGAGAAGCTT-G 1513
||||| | |||||||| | | || ||||| || ||| ||||| || ||||||||| || |
Sbjct 1478 AACCTACTAAATCTCCAA-ACATTACGCCGAA-AAAGCTCTCTTACTTGGAGAAG-TTAG 1534
Query 1514 AGAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1554
|||| || || |||||||| || || |||||||| ||||||
Sbjct 1535 AGAATTTGAACGGTTTTAGAAGTCCGAAAGATAGACATTGA 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66124665320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5