BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13240.1 Length=1762 Score E Sequences producing significant alignments: (Bits) Value Ahg359012 jgi|Araly1|359012|fgenesh1_pg.C_scaffold_9000052 2494 0.0 Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183 1164 0.0 > Ahg359012 jgi|Araly1|359012|fgenesh1_pg.C_scaffold_9000052 Length=1548 Score = 2494 bits (1350), Expect = 0.0 Identities = 1488/1555 (96%), Gaps = 8/1555 (1%) Strand=Plus/Plus Query 1 ATGGTTCCATCGTTGGAACGAGGAATAAGCATCACGAGTTCATTCAATCTT-GATAGAAT 59 |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 1 ATGGTTCCATCGTTGGAACGAGGAATAAGCATTTCGAGTTCATTCAAT-TTAGATAGAAT 59 Query 60 GTTTGATTCCTCACCGGGAAAAGAACAACAACAACCTCATCTCGCGGAAACAACCATGCC 119 ||| |||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| Sbjct 60 GTTCGATTCCTCACCGGGAAAAGAACAACAACAAGCTCATCTCGTGGAATCAACCATGCC 119 Query 120 GGAGAGTCAAACTCAAGACAGCCTCGGTGGAAGTCCCGTGGAGACTAGCCGCCCGATGAC 179 ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGAAAGTCAAAATCAAGAAAGCCTCGGTGGAAGTCCCGTGGAGACTAGCCGCCCGATGAC 179 Query 180 TTCTCGTCTGATTTCCCGTAGACAGGACAAGCAACAATCCGAGACGGAGATGATGAAAGA 239 ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 180 TTCCCGTCTGATTTCCCGTAGACAAGACAAGCAACAATCCGAAACGGAGATGATGAAAGA 239 Query 240 TAGATTCACGAAATTACTTCTTGGAGAAGATATGTCTGGTGGTGGTAAAGGTGTATCTTC 299 ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 240 TAGATTCACAAAATTACTTCTGGGAGAAGATATGTCAGGTGGTGGTAAAGGTGTATCTTC 299 Query 300 TGCTTTGGCACTATCAAATGCCATCACGAATCTAGCCGCGTCAATATTCGGGGAACAGAC 359 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 300 TGCTTTGGCACTATCAAATGCCATCACAAATCTAGCCGCGTCAATATTCGGGGAACAAAC 359 Query 360 AAAGTTGCAGCCGATGGCACCGGATAGACGAGCGAGGTGGAAGAAAGAGATCGATTGGTT 419 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 360 AAAGTTGCAGCCGATGGCACCGGATAGGCGAGCGAGGTGGAAGAAAGAGATCGAATGGTT 419 Query 420 GTTGTCCGTGACTGATCACATCGTCGAGTTTGTTCCATCTCAACAGATTAGTAAGGAAGG 479 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTGTCTGTAACTGATCACATCGTCGAGTTTGTTCCATCTCAACAGATTAGTAAGGAAGG 479 Query 480 AGTCTGCACCGAGATTATGGTGACAAGACAAAGAGGTGATCTCCTCATGAACATCCCTGC 539 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 480 AGTCTGCACCGAGATTATGGTTACAAGACAAAGAGGTGATCTCCTCATGAACATCCCGGC 539 Query 540 CCTTCGCAAACTCGACGCCATGCTCATTGATACATTGGACAATTTTAGAGGACACAATGA 599 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CCTCCGCAAACTCGATGCCATGCTCATTGATACATTGGACAATTTTAGAGGACACAATGA 599 Query 600 GTTTTGGTATGTATCGAGAGATTCAGAAGAAGGGAAACAAGCACGGAATGAGAGGACAAA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GTTTTGGTATGTATCGAGAGATTCAGAAGAAGGGAAACAAGCACGGAATGAGAGGACAAA 659 Query 660 GGACAAGTGGTGGCTTCCTCCGGTTAAAGTCCCTCCTAATGGCTTGTCCGAATCAGCCCG 719 ||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 660 GGACAAGTGGTGGCTTCCTCCAGTGAAAGTCCCTCTTAATGGCTTGTCCGAATCAGCCCG 719 Query 720 AAGAATGCTTCATTTTCAAAAAGATTCAGTCTCACAAGTCCAAAAAGCCGCCATGGCTAT 779 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 720 AAGAATGCTTCATTTTCAAAAAGATTCGGTCTCACAAGTCCAAAAAGCCGCCATGGCTAT 779 Query 780 TAACGCGCAAGTTCTGTCAGAAATGGCTATCCCTGATAGCTATATCGAGTCTCTTCCAAA 839 ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 780 TAATGCGCAAGTTCTATCAGAAATGGCTATCCCTGATAGCTATATTGAGTCTCTTCCAAA 839 Query 840 GAATGGAAGAGTAAGCCTTGGGGATTCGTTATACAAGAGCATAACAGAAGAGTGGTTTGA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GAATGGAAGAGTAAGCCTTGGGGATTCGTTATACAAGAGCATAACAGAAGAGTGGTTTGA 899 Query 900 TCCAGAGCAGTTCTTGTCAACACTTGACTTATCTACAGAGCACAAAGTGTTGGATGTGAA 959 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 900 TCCAGAGCAGTTCTTGTCCACACTTGACTTGTCTACAGAGCACAAAGTGTTGGATGTGAA 959 Query 960 GAATAGGATTGAGGCCTCAATCGTTATATGGAAAAGAAAACTTCATCTAAAAGACAACAA 1019 ||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 960 GAACAGGATCGAGGCATCAATTGTTATATGGAAAAGGAAACTTCATCTAAAAGATAACAA 1019 Query 1020 ATCTTCTTGGGGATCAGCTGTGAGCTTGGAGAAACGAGAGTTGTTCGAAGAGAGAGCCGA 1079 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1020 ATCTTCTTGGGGATCAGCTGTGAGTTTGGAGAAACGAGAGTTGTTCGAAGAGAGAGCCGA 1079 Query 1080 GACGATCTTGGTCTTGCTTAAACAAAAGTTCCCTGGTCTTCCCCAATCTTCCCTTGACAT 1139 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1080 GACCATCTTGGTCTTGCTTAAACAAAAGTTCCCTGGTCTTCCTCAATCTTCACTTGACAT 1139 Query 1140 TTCCAAAATTCAGTATAACAAGGATGTGGGACATGCGGTTTTGGAGAGCTACTCAAGGAT 1199 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 1140 TTCCAAAATTCAGTATAACAAGGATGTTGGACACGCGGTTTTGGAGAGCTACTCGAGGAT 1199 Query 1200 ATTAGAGAGCTTAGGGTACACGGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTC 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 ATTAGAGAGCTTAGGGTACACGGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTC 1259 Query 1260 TTTAGCCCGGAAGCAATGCACAGGTGAAGAAACATCAGATGGTGGGAAAATAGCAACGGA 1319 ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| || Sbjct 1260 TTTAGCCCGGAAGCAGTGCACTGGTGAAGAAACATCAGATGGTGGGAAATTAGCAACAGA 1319 Query 1320 AACGGACTCAGCGTCTGCTGGATCTTCGAACTACTCAGGAGAGGAAATAGAGAAGCTTGA 1379 ||||||||| | | | | | |||||||||||||||||||||||||| |||||||||||| Sbjct 1320 AACGGACTC-G-G-C-GA-G-ATCTTCGAACTACTCAGGAGAGGAAACAGAGAAGCTTGA 1373 Query 1380 ATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGTTGGAGTGACAATAGTTC 1439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1374 ATCACAAAACTCATCAAAGACGACATTGCTTGATTTTATTGGCTGGAGTGACAATAGTTC 1433 Query 1440 AAAAGGGCAGTCAGAGAAACCTCCAAAATCTCCGAGAATGACGCCAAAGAAACTCTCATA 1499 ||||||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||| Sbjct 1434 AAAAGGGCAATCAGAGAAACCTCCAAAATCTCCAAAAATGACGCCAAAGAAATTCTCATA 1493 Query 1500 TTTGGAGAAGCTTGAGAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1554 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1494 TTTGGAGAAGCTTGAAAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1548 > Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183 Length=1575 Score = 1164 bits (630), Expect = 0.0 Identities = 1125/1361 (83%), Gaps = 46/1361 (3%) Strand=Plus/Plus Query 211 CAACAATCCGAGACGGAGATGATGAAAGATAGATTCACGAAATTACTTCTTGGAGAAGAT 270 |||||| | || | ||||||||||||||| || ||| ||||||||||||||||||||||| Sbjct 244 CAACAAGCAGATATGGAGATGATGAAAGACAGGTTCGCGAAATTACTTCTTGGAGAAGAT 303 Query 271 ATGTCTGGTGGTGGTAAAGGTGTATCTTCTGCTTTGGCACTATCAAATGCCATCACGAAT 330 ||||| ||||| || |||||||||||||||||| |||| || || ||||| ||||| ||| Sbjct 304 ATGTCCGGTGGCGGGAAAGGTGTATCTTCTGCTCTGGCCCTTTCCAATGCTATCACAAAT 363 Query 331 CTAGCCGCGTCAATATTCGGGGAACAGACAAAGTTGCAGCCGATGGCACCGGATAGACGA 390 || || ||||| |||||||||||||| |||||| | ||||||||| | | ||||||| | Sbjct 364 CTTGCTGCGTCTATATTCGGGGAACAAACAAAGCTACAGCCGATGCCGCAAGATAGACAA 423 Query 391 GCGAGGTGGAAGAAAGAGATCGATTGGTTGTTGTCCGTGACTGATCACATCGTCGAGTTT 450 | ||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||| Sbjct 424 GTGAGGTGGAAGAAAGAGATCGATTGGTTATTGTCTGTGACCGATCACATTGTCGAGTTT 483 Query 451 GTTCCATCTCAACAGATTAGTAAGGAAGGAGTCTGCACCGAGATTATGGTGACAAGACAA 510 ||||| |||||||| | || || |||||||| ||||| ||||||||||||||||||||| Sbjct 484 GTTCCTTCTCAACAAACGAGCAAAGAAGGAGTTTGCACTGAGATTATGGTGACAAGACAA 543 Query 511 AGAGGTGATCTCCTCATGAACATCCCTGCCCTTCGCAAACTCGACGCCATGCTCATTGAT 570 ||||||||||| || |||||||| || || ||||| |||||||||||||||||||| ||| Sbjct 544 AGAGGTGATCTTCTTATGAACATTCCAGCTCTTCGAAAACTCGACGCCATGCTCATCGAT 603 Query 571 ACATTGGACAATTTTAGAGGACACAATGAGTTTTGGTATGTATCGAGAGATTCAGAAGAA 630 |||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||| Sbjct 604 ACATTGGACAATTTCAGAGGACACAACGAGTTTTGGTATGTCTCTAGAGATTCAGAAGAA 663 Query 631 GGGAAACAAGC-ACGGAATGAGAGGACAAAGGACAAGTGGTGGCTTCCTCCGGTTAAAGT 689 ||| | || || | ||||||| ||||||| ||||| |||||||| |||||||||||||| Sbjct 664 GGGCAGCAGGCGA-GGAATGATCGGACAAACGACAAATGGTGGCTACCTCCGGTTAAAGT 722 Query 690 CCCTCCTA-ATGGCTTGTCCGAATCAGCCCGAAGAATGCTTCATTTTCAAAAAGATTCAG 748 ||||| | || || || ||| |||| || ||||||||| | || ||||||||||||| Sbjct 723 TCCTCCCGGA-GGTTTATCTGAACCAGCTCGGAGAATGCTTTACTTCCAAAAAGATTCAG 781 Query 749 TCTCACAAGTCCAAAAAGCCGCCATGGCTATTAACGCGCAAGTTCTGTCAGAAATGGCTA 808 || |||| || |||||||| || |||||||| || || ||||| || ||||||||||| | Sbjct 782 TCACACAGGTTCAAAAAGCTGCAATGGCTATCAATGCTCAAGTCCTTTCAGAAATGGCAA 841 Query 809 TCCCTGATAGCTATATCGAGTCTCTTCCAAAGAATGGAAGAGTAAGCCTTGGGGATTCGT 868 | ||||| ||||| ||||| ||||| || ||||| ||||||| ||||| ||||||||| Sbjct 842 TACCTGAGAGCTACATCGACTCTCTCCCTAAGAACGGAAGAGCCAGCCTCGGGGATTCGA 901 Query 869 TATACAAGAGCATAACAGAAGAGTGGTTTGATCCAGAGCAGTTCTTGTCAACACTTG-AC 927 | ||||||||||||||||| |||||||||||||| ||||||||||| || | ||| || Sbjct 902 TCTACAAGAGCATAACAGAGGAGTGGTTTGATCCGGAGCAGTTCTTATCGATG-TTGGAC 960 Query 928 TTATCTACAGAGCACAAAGTGTTGGATGTGAAGAATAGGATTGAGGCCTCAATCGTTATA 987 || || ||||| ||||||||||||||| ||||||||||||||||||| || | || || Sbjct 961 TTGTCGACAGAACACAAAGTGTTGGATTTGAAGAATAGGATTGAGGCATCTGTAGTGATT 1020 Query 988 TGGAAAAGAAAACTTCATCTA-AAAG-ACAACAAATCTTCTTGGGGATCAGCTGTGAGCT 1045 ||||| || || ||||| | | |||| ||| ||||||||||||||| ||||| || |||| Sbjct 1021 TGGAAGAGGAAGCTTCA-C-ACAAAGGACACCAAATCTTCTTGGGGCTCAGCAGTTAGCT 1078 Query 1046 TGGAGAA-ACGAGAGTTGTTCGAAGAGAGAGCCGAGACGATCTTGGTCTTGCTTAAACAA 1104 ||||||| | |||| ||||||||||||||||| || || ||||| ||||||||||||||| Sbjct 1079 TGGAGAAGA-GAGAATTGTTCGAAGAGAGAGCAGAAACAATCTTAGTCTTGCTTAAACAA 1137 Query 1105 AAGTT-CCCTGGTCTTCCCCAATCTTCCCTTGACATTTCCAAAATTCAGTATAACAAGGA 1163 || || ||| |||||||| ||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 1138 AAATTTCCC-GGTCTTCCTCAATCTTCCCTTGACATATCCAAGATTCAGTTTAACAAGGA 1196 Query 1164 TGT-GGGACATGCGGTTTTGGAGAGCTACTCAAGGATA-TTAGAGAGCTTAGGGT-ACAC 1220 || ||| || ||||| |||||||| ||||| |||||| || |||||||| || | | || Sbjct 1197 CGTTGGG-CAAGCGGTGTTGGAGAGTTACTCTAGGATACTT-GAGAGCTT-GGCTTATAC 1253 Query 1221 GGAAATGTCGAGAATCGACGATGTACTTTATGCGGATTCTTTAGCCCGGAAGCAA--TGC 1278 | ||||| ||||| || ||||| ||||| | ||||| || || | |||||| | Sbjct 1254 AGTGATGTCAAGAATAGAAGATGTTCTTTACACAGATTCATTGGCACTAAAGCAAACTTT 1313 Query 1279 ACAGG-TGAAGAAACATCAGATGGTGGGAAAATAGCAACGGAAACGGACTCAGCGTCTGC 1337 | || ||||||||||||||||||||||| || |||| || ||||| || | ||| || Sbjct 1314 ATTGGCTGAAGAAACATCAGATGGTGGGAGAA---CAACCGAGACGGATTCCGAGTCAGC 1370 Query 1338 TGGATCTTCGAACTACTCAGGAGAGGAAATAGAGAAGCTTGAATCACAAAACTCATCAAA 1397 |||||||| |||| | ||||| |||| ||||||||||| |||| |||| ||| Sbjct 1371 GGGATCTTCTAACT-CG--GGAGAAGAAACCGAGAAGCTTGACCCACACTACTC--CAA- 1424 Query 1398 GACGACATTGCTTG-ATTTTATTGGTTGGAGTGACAATAGTTCAAAAGGGCAGTCAGAGA 1456 ||| | ||| ||| ||||||| ||||||| ||| |||||||| ||||| | | | || | Sbjct 1425 GAC--C-TTG-TTGGATTTTATGGGTTGGAATGATAATAGTTCGAAAGG-CGG-C-GATA 1477 Query 1457 AACCTCCAAAATCTCCGAGA-ATGACGCCAAAGAAA-CTCTCATATTTGGAGAAGCTT-G 1513 ||||| | |||||||| | | || ||||| || ||| ||||| || ||||||||| || | Sbjct 1478 AACCTACTAAATCTCCAA-ACATTACGCCGAA-AAAGCTCTCTTACTTGGAGAAG-TTAG 1534 Query 1514 AGAACTTAAATGGTTTTAGGAGCCCTAAAGATAGGCATTGA 1554 |||| || || |||||||| || || |||||||| |||||| Sbjct 1535 AGAATTTGAACGGTTTTAGAAGTCCGAAAGATAGACATTGA 1575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66124665320 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5