BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13250.1
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497065 jgi|Araly1|497065|fgenesh2_kg.9__30__AT4G13250.1 2756 0.0
> Ahg497065 jgi|Araly1|497065|fgenesh2_kg.9__30__AT4G13250.1
Length=1754
Score = 2756 bits (1492), Expect = 0.0
Identities = 1677/1764 (95%), Gaps = 22/1764 (1%)
Strand=Plus/Plus
Query 15 CTTCTTCCTCCGATCACTCTATTTAACGTCTTCGACGAATCCGAAGCTGAAAAATATCTA 74
||||||| ||||||| ||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 1 CTTCTTCTTCCGATCTCTCTATTTAACGTCTTCGACGAATCCGAACCTAAAAAATACCTA 60
Query 75 ACAATCTATCTTTTGGGTCCC-----T---A-AAAAAGCTCCTTCGTTTATCTTGTTTTC 125
|||||| |||||||||| ||| | | ||||||||| ||| ||||||||||||||
Sbjct 61 ACAATCAATCTTTTGGGACCCTAAAATACCATAAAAAGCTCTTTCCTTTATCTTGTTTTC 120
Query 126 TAAGTTATCTTTTTGTATGAGTTTCAAAGCTTATCATTATCTCACTCTTCTTCCATAGCT 185
||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||
Sbjct 121 TAAGTTATC-TTTTGCATGAGTTTCAAAG-----C-TTATCTCACTCTTCTTCCATAGCT 173
Query 186 ATGACTACTTTAACGAAGATTCAAGTGTACCCACAAGTCTTGGAGCACCGTCTCTTCTTC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 ATGACTACTTTAACGAAGATTCAAGTGTACCCACAAGTCTTGGAGCACCGTCTCTTCTTC 233
Query 246 AGAGATCCGATACGGGTCGGGTCAAGATTGACTTGTAGAGAACGTAGTAATAGGGTTTAT 305
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 234 AGAGATCCGATACGGGTCGGGTCAAGATTTACTTGTAGAGAACGTAGTAATAGGGTTTCT 293
Query 306 GTGCATCGGTGTGagaaaaaagttgaaagaaagagaaaagttgagaaaTTTAAGGGAAAT 365
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 294 GTGCATCGGTGTGAGAAAAAAGTTGAAAGGAAGAGAAAAGTTGAGAAATTTAAAGGAAAT 353
Query 366 GGGTCGTGGGATTCTTTGAAATCTGGGTTTTTAGGGTTTAGTAAATTAGGGTTCTTGTCT 425
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 354 GGGTTGTGGGATTCTTTGAAATCTGGCTTTTTAGGTTTTAGTAAATTAGGGTTCTTGTCT 413
Query 426 AAAGATGAGTATAATCAGAAAGTTGAAAACTTGGAGATGGTTTTCTCTTCGGTTGCTGTT 485
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 414 AAAGATGAGTATAATCAGAAAGTTGAAAACTTGGAGACGGTTTTCTCTTCGATTGCTGTT 473
Query 486 CAAATTGCGAGATACATTGTGACGATGACAAGTACTGGAGCTATTCTTTTGATTGGGTTT 545
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 474 CAAATTGCGAGATACATTGTGACGATGACAAGCACTGGAGCTATTCTTTTGATTGGGTTT 533
Query 546 CAATTATCAGGTGGAGATAGTTCGATGAACTCATTGGTTTGGTATAGTTGGCTTGGTGGA 605
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CAATTATCAGGTGGGGATAGTTCGATGAACTCATTGGTTTGGTATAGTTGGCTTGGTGGA 593
Query 606 ATTATCATTGGAACCATGACTGGTGCTAACATGGTTTTGGAAGATCATTATCGAGCCGGT 665
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 594 GTTATCATTGGAACCATGACTGGTGCTAACATGGTTTTAGAAGATCATTACCGAGCCGGT 653
Query 666 CCACGGAATGTTGTTATAACCGGAAGCACTAGGGGACTAGGGAAAGCTCTTGCTAGAGAG 725
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 654 CCCCGGAATGTTGTTATAACCGGAAGCACGAGGGGACTTGGGAAAGCTCTTGCTAGAGAG 713
Query 726 TTTCTTCTCTCTGGAGACAGAGTCATTGTCACATCTCGCAGTTCTGAATCTGTTGATATG 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TTTCTTCTCTCTGGAGACAGAGTCATTGTCACATCTCGCAGTTCTGAATCTGTTGATATG 773
Query 786 ACTGTCAAAGAGCTAGAGCAAAATCTCAAAGAGATTATGAGTAACGCTAGCGAGTCAGCT 845
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 774 ACTGTCAAAGAGCTAGAGCAAAATCTCAAAGAGATTATGAGTAATGCTAGCGAGTCTGCT 833
Query 846 A-GAAAGAAACTGAGTGATGCTAAGGTAGTTGGTATTGCCTGTGATGTTTGCAAACCCGA 904
| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAGAA-GAAATTGAGTGATGCTAAGGTAGTTGGTATTGCCTGTGATGTTTGCAAACCCGA 892
Query 905 AGACGTTGAGAAGCTGTCGAATTTCGCTGTAAAAGAGCTTGGTTCCATCAACATATGGAT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGACGTTGAGAAGCTGTCGAATTTCGCTGTAAAAGAGCTTGGTTCCATCAACATATGGAT 952
Query 965 AAACAATGCTGGTACTAACAAAGGTTTTAGACCGCTACTCGAGTTCACGGAAGAAGATAT 1024
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 953 AAACAATGCTGGTACTAACAAAGGTTTTAGACCGCTACTCGAGTTCACTGAAGAAGATAT 1012
Query 1025 CACACAGATTGTCTCCACAAATTTGATTGGATCAATTCTATGTACACGAGGGGCTATGGA 1084
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1013 CACACAGATTGTCTCCACAAATTTGATTGGATCAATTCTATGCACACGAGGGGCGATGGA 1072
Query 1085 TGTGATGAGCAGACAGCACAGTGGTGGACACATCTTTAACATGGATGGTGCTGGCTCTGG 1144
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1073 TGTGATGAGCAGACAGCACAATGGTGGACACATCTTTAACATGGATGGTGCTGGTTCTGG 1132
Query 1145 AGGTTCAAGTACTCCTCTCACTGCCGTATATGGTTCAACAAAATGTGGACTTAGGCAGTT 1204
||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1133 GGGTTCTAGCACTCCTCTCACGGCCGTATATGGGTCAACAAAATGTGGACTTAGGCAATT 1192
Query 1205 TCATGGGTCTATAGTGAAAGAAAGCCAAAAAACAAACGTTGGCCTTCACACTGCATCCCC 1264
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1193 TCATGGGTCTATTGTGAAAGAAAGCCAAAAAACAAACGTTGGCCTGCACACTGCATCCCC 1252
Query 1265 TGGCATGGTTCTGACAGAACTTCTTCTCAGTGGTTCGAGCATTAAAAACAAGCAGATGTT 1324
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1253 GGGCATGGTTCTGACCGAACTTCTTCTTAGTGGTTCGAGCATAAAAAACAAGCAGATGTT 1312
Query 1325 TAACATAATCTGTGAGCTTCCTGAGACAGTAGCTAGAACTTTGGTACCACGAATGCGAGT 1384
|||||||||||| || || || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1313 TAACATAATCTGCGAACTACCAGAGACAGTAGCTAGAACGTTGGTACCACGAATGCGAGT 1372
Query 1385 TGTGAAAGGTTCGGGAAAAGCCGTCAATTACCTAACTCCTCCTCGGATATTGTTAGCTAT 1444
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1373 TGTGAAAGGTTCGGGAAAAGCCGTCAATTACCTGACTCCTCCTCGGATATTGTTAGCTAT 1432
Query 1445 TGTCACTTCCTGGCTAAGGAGAGGCCGATGGTTTGATGACCAAGGACGGGCGTTATATGC 1504
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1433 TGTCACTTCCTGGCTCAGGAGAGGCCGATGGTTCGATGACCAAGGACGGGCGTTATATGC 1492
Query 1505 AGCAGAAGCAGATAGACTAAGGAACTGGGCAGAGAACAGGACGAGGTTGTCGTTAACAGA 1564
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1493 AGCGGAAGCAGACAGACTAAGAAACTGGGCAGAGAACAGGACGAGGTTGTCGTTAACGGA 1552
Query 1565 CGCGATGGAGATGTATACAGAGAATACTTGGGTCTCTGTTTTCTCTCTTTCTGTTGTTTG 1624
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1553 CGCGATGGAGATGTACACAGAGAATACATGGGTCTCTGTTTTCTCTCTTTCTGTTGTTTG 1612
Query 1625 CGCTTTCATCATCTTACAAAGCACAACACCTAGCTCTTTTCCAGGCACATAACAAACATC 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1613 CGCTTTCATCATCTTACAAAGCACAACACCTAGCTCTTTTCCAGGCACATAACAA-CATC 1671
Query 1685 TTCCTCGGATGTGTTTTAAGAAAATTGTAAACGTACATGTTATGTATA-A-AAAACATAT 1742
|| | ||||||||||| ||||||| ||||||||||||||||||||||| | |||| ||||
Sbjct 1672 TTTCACGGATGTGTTT-AAGAAAAATGTAAACGTACATGTTATGTATACATAAAAGATAT 1730
Query 1743 ATATAACAGAACCGATTTGTTCAT 1766
||||||||||||||||||||||||
Sbjct 1731 ATATAACAGAACCGATTTGTTCAT 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69819419085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5