BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13250.1 Length=1859 Score E Sequences producing significant alignments: (Bits) Value Ahg497065 jgi|Araly1|497065|fgenesh2_kg.9__30__AT4G13250.1 2756 0.0 > Ahg497065 jgi|Araly1|497065|fgenesh2_kg.9__30__AT4G13250.1 Length=1754 Score = 2756 bits (1492), Expect = 0.0 Identities = 1677/1764 (95%), Gaps = 22/1764 (1%) Strand=Plus/Plus Query 15 CTTCTTCCTCCGATCACTCTATTTAACGTCTTCGACGAATCCGAAGCTGAAAAATATCTA 74 ||||||| ||||||| ||||||||||||||||||||||||||||| || ||||||| ||| Sbjct 1 CTTCTTCTTCCGATCTCTCTATTTAACGTCTTCGACGAATCCGAACCTAAAAAATACCTA 60 Query 75 ACAATCTATCTTTTGGGTCCC-----T---A-AAAAAGCTCCTTCGTTTATCTTGTTTTC 125 |||||| |||||||||| ||| | | ||||||||| ||| |||||||||||||| Sbjct 61 ACAATCAATCTTTTGGGACCCTAAAATACCATAAAAAGCTCTTTCCTTTATCTTGTTTTC 120 Query 126 TAAGTTATCTTTTTGTATGAGTTTCAAAGCTTATCATTATCTCACTCTTCTTCCATAGCT 185 ||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||| Sbjct 121 TAAGTTATC-TTTTGCATGAGTTTCAAAG-----C-TTATCTCACTCTTCTTCCATAGCT 173 Query 186 ATGACTACTTTAACGAAGATTCAAGTGTACCCACAAGTCTTGGAGCACCGTCTCTTCTTC 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 ATGACTACTTTAACGAAGATTCAAGTGTACCCACAAGTCTTGGAGCACCGTCTCTTCTTC 233 Query 246 AGAGATCCGATACGGGTCGGGTCAAGATTGACTTGTAGAGAACGTAGTAATAGGGTTTAT 305 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 234 AGAGATCCGATACGGGTCGGGTCAAGATTTACTTGTAGAGAACGTAGTAATAGGGTTTCT 293 Query 306 GTGCATCGGTGTGagaaaaaagttgaaagaaagagaaaagttgagaaaTTTAAGGGAAAT 365 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 294 GTGCATCGGTGTGAGAAAAAAGTTGAAAGGAAGAGAAAAGTTGAGAAATTTAAAGGAAAT 353 Query 366 GGGTCGTGGGATTCTTTGAAATCTGGGTTTTTAGGGTTTAGTAAATTAGGGTTCTTGTCT 425 |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 354 GGGTTGTGGGATTCTTTGAAATCTGGCTTTTTAGGTTTTAGTAAATTAGGGTTCTTGTCT 413 Query 426 AAAGATGAGTATAATCAGAAAGTTGAAAACTTGGAGATGGTTTTCTCTTCGGTTGCTGTT 485 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 414 AAAGATGAGTATAATCAGAAAGTTGAAAACTTGGAGACGGTTTTCTCTTCGATTGCTGTT 473 Query 486 CAAATTGCGAGATACATTGTGACGATGACAAGTACTGGAGCTATTCTTTTGATTGGGTTT 545 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 474 CAAATTGCGAGATACATTGTGACGATGACAAGCACTGGAGCTATTCTTTTGATTGGGTTT 533 Query 546 CAATTATCAGGTGGAGATAGTTCGATGAACTCATTGGTTTGGTATAGTTGGCTTGGTGGA 605 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 CAATTATCAGGTGGGGATAGTTCGATGAACTCATTGGTTTGGTATAGTTGGCTTGGTGGA 593 Query 606 ATTATCATTGGAACCATGACTGGTGCTAACATGGTTTTGGAAGATCATTATCGAGCCGGT 665 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 594 GTTATCATTGGAACCATGACTGGTGCTAACATGGTTTTAGAAGATCATTACCGAGCCGGT 653 Query 666 CCACGGAATGTTGTTATAACCGGAAGCACTAGGGGACTAGGGAAAGCTCTTGCTAGAGAG 725 || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 654 CCCCGGAATGTTGTTATAACCGGAAGCACGAGGGGACTTGGGAAAGCTCTTGCTAGAGAG 713 Query 726 TTTCTTCTCTCTGGAGACAGAGTCATTGTCACATCTCGCAGTTCTGAATCTGTTGATATG 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 TTTCTTCTCTCTGGAGACAGAGTCATTGTCACATCTCGCAGTTCTGAATCTGTTGATATG 773 Query 786 ACTGTCAAAGAGCTAGAGCAAAATCTCAAAGAGATTATGAGTAACGCTAGCGAGTCAGCT 845 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 774 ACTGTCAAAGAGCTAGAGCAAAATCTCAAAGAGATTATGAGTAATGCTAGCGAGTCTGCT 833 Query 846 A-GAAAGAAACTGAGTGATGCTAAGGTAGTTGGTATTGCCTGTGATGTTTGCAAACCCGA 904 | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 AAGAA-GAAATTGAGTGATGCTAAGGTAGTTGGTATTGCCTGTGATGTTTGCAAACCCGA 892 Query 905 AGACGTTGAGAAGCTGTCGAATTTCGCTGTAAAAGAGCTTGGTTCCATCAACATATGGAT 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 AGACGTTGAGAAGCTGTCGAATTTCGCTGTAAAAGAGCTTGGTTCCATCAACATATGGAT 952 Query 965 AAACAATGCTGGTACTAACAAAGGTTTTAGACCGCTACTCGAGTTCACGGAAGAAGATAT 1024 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 953 AAACAATGCTGGTACTAACAAAGGTTTTAGACCGCTACTCGAGTTCACTGAAGAAGATAT 1012 Query 1025 CACACAGATTGTCTCCACAAATTTGATTGGATCAATTCTATGTACACGAGGGGCTATGGA 1084 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1013 CACACAGATTGTCTCCACAAATTTGATTGGATCAATTCTATGCACACGAGGGGCGATGGA 1072 Query 1085 TGTGATGAGCAGACAGCACAGTGGTGGACACATCTTTAACATGGATGGTGCTGGCTCTGG 1144 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 1073 TGTGATGAGCAGACAGCACAATGGTGGACACATCTTTAACATGGATGGTGCTGGTTCTGG 1132 Query 1145 AGGTTCAAGTACTCCTCTCACTGCCGTATATGGTTCAACAAAATGTGGACTTAGGCAGTT 1204 ||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 1133 GGGTTCTAGCACTCCTCTCACGGCCGTATATGGGTCAACAAAATGTGGACTTAGGCAATT 1192 Query 1205 TCATGGGTCTATAGTGAAAGAAAGCCAAAAAACAAACGTTGGCCTTCACACTGCATCCCC 1264 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1193 TCATGGGTCTATTGTGAAAGAAAGCCAAAAAACAAACGTTGGCCTGCACACTGCATCCCC 1252 Query 1265 TGGCATGGTTCTGACAGAACTTCTTCTCAGTGGTTCGAGCATTAAAAACAAGCAGATGTT 1324 |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1253 GGGCATGGTTCTGACCGAACTTCTTCTTAGTGGTTCGAGCATAAAAAACAAGCAGATGTT 1312 Query 1325 TAACATAATCTGTGAGCTTCCTGAGACAGTAGCTAGAACTTTGGTACCACGAATGCGAGT 1384 |||||||||||| || || || ||||||||||||||||| |||||||||||||||||||| Sbjct 1313 TAACATAATCTGCGAACTACCAGAGACAGTAGCTAGAACGTTGGTACCACGAATGCGAGT 1372 Query 1385 TGTGAAAGGTTCGGGAAAAGCCGTCAATTACCTAACTCCTCCTCGGATATTGTTAGCTAT 1444 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1373 TGTGAAAGGTTCGGGAAAAGCCGTCAATTACCTGACTCCTCCTCGGATATTGTTAGCTAT 1432 Query 1445 TGTCACTTCCTGGCTAAGGAGAGGCCGATGGTTTGATGACCAAGGACGGGCGTTATATGC 1504 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1433 TGTCACTTCCTGGCTCAGGAGAGGCCGATGGTTCGATGACCAAGGACGGGCGTTATATGC 1492 Query 1505 AGCAGAAGCAGATAGACTAAGGAACTGGGCAGAGAACAGGACGAGGTTGTCGTTAACAGA 1564 ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1493 AGCGGAAGCAGACAGACTAAGAAACTGGGCAGAGAACAGGACGAGGTTGTCGTTAACGGA 1552 Query 1565 CGCGATGGAGATGTATACAGAGAATACTTGGGTCTCTGTTTTCTCTCTTTCTGTTGTTTG 1624 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1553 CGCGATGGAGATGTACACAGAGAATACATGGGTCTCTGTTTTCTCTCTTTCTGTTGTTTG 1612 Query 1625 CGCTTTCATCATCTTACAAAGCACAACACCTAGCTCTTTTCCAGGCACATAACAAACATC 1684 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1613 CGCTTTCATCATCTTACAAAGCACAACACCTAGCTCTTTTCCAGGCACATAACAA-CATC 1671 Query 1685 TTCCTCGGATGTGTTTTAAGAAAATTGTAAACGTACATGTTATGTATA-A-AAAACATAT 1742 || | ||||||||||| ||||||| ||||||||||||||||||||||| | |||| |||| Sbjct 1672 TTTCACGGATGTGTTT-AAGAAAAATGTAAACGTACATGTTATGTATACATAAAAGATAT 1730 Query 1743 ATATAACAGAACCGATTTGTTCAT 1766 |||||||||||||||||||||||| Sbjct 1731 ATATAACAGAACCGATTTGTTCAT 1754 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69819419085 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5