BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13260.1
Length=1843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332994 jgi|Araly1|332994|fgenesh1_pm.C_scaffold_9000022 1973 0.0
> Ahg332994 jgi|Araly1|332994|fgenesh1_pm.C_scaffold_9000022
Length=1248
Score = 1973 bits (1068), Expect = 0.0
Identities = 1188/1248 (95%), Gaps = 0/1248 (0%)
Strand=Plus/Plus
Query 374 ATGGAGTTTGTTACAGAAACGTTAGGCAAGAGAATCCATGATCCGTACGTGGAGGAAACT 433
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1 ATGGAGTTTGTAACAGAAACGTTAGGCAAGAGAGTCCATGATCCGTACGTGGAGGATACT 60
Query 434 AGGTGCTTAATGATTCCCGGACCAATCATTGTCGGTTCCGGGCCGTCGGGACTGGCCACA 493
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AGGTTCTTAATGATTCCCGGACCAATCATTGTCGGTTCCGGACCGTCGGGACTGGCCACA 120
Query 494 GCGGCATGTTTAAAGTCGAGAGACATCCCTAGTTTGATTCTAGAACGTTCCACTTGCATA 553
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGGCGTGTTTGAAGTCGAGAAACATCCCTAGTTTGATTCTAGAACGTTCCACTTGCATA 180
Query 554 GCGTCACTATGGCAGCACAAAACATATGATCGTCTTCGACTTCATCTCCCTAAAGATTTC 613
|| ||||||||||||| |||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 181 GCTTCACTATGGCAGCTCAAAACATATGATCGTCTCCGACTTCATCTACCTAAACATTTC 240
Query 614 TGTGAGCTTCCATTGATGCCTTTTCCTTCAAGCTACCCTACTTACCCTACAAAGCAACAG 673
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTGAGCTTCCCTTGATGCCTTTTCCTTCAAGCTACCCTACTTACCCTACAAAGCAACAG 300
Query 674 TTCGTCCAATACCTTGAGTCTTACGCCGAACATTTTGACCTAAAGCCCGTTTTTAACCAG 733
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TTTGTCCAATACCTTGAGTCCTACGCGGAACATTTTGACCTAAAGCCCGTTTTTAACCAG 360
Query 734 ACCGTGGAGGAAGCCAAGTTCGATAGGCGGTGTGGGTTATGGAGGGTGAGGACAACCGGA 793
||||||||||| || ||||| ||||||| | |||||||||||||||||||||| ||||||
Sbjct 361 ACCGTGGAGGAGGCAAAGTTTGATAGGCAGCGTGGGTTATGGAGGGTGAGGACTACCGGA 420
Query 794 GGGAAGAAGGATGAGACAATGGAGTATGTATCACGGTGGCTTGTTGTGGCGACCGGGGAG 853
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GGAAAGAATGATGAGACAATGGAGTATGTATCACGGTGGCTTGTTGTGGCCACCGGGGAG 480
Query 854 AATGCCGAGGAGGTGATGCCGGAGATTGATGGAATCCCGGATTTTGGTGGACCTATCCTC 913
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 481 AATGCCGAGGAGGTGATGCCGGAGATTGATGGAATCGCGGATTTTGGTGGACCAATCCTC 540
Query 914 CACACAAGCTCCTATAAGAGCGGTGAAATATTTAGTGAGAAGAAGATTTTGGTTGTAGGA 973
||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| || |||
Sbjct 541 CACACAAGCTCATATAAGAGTGGTGAAATGTTTAGTGAGAAGAAGGTTTTGGTCGTGGGA 600
Query 974 TGTGGAAACTCCGGGATGGAAGTTTGTTTAGACCTTTGCAACTTCAATGCTCTTCCTTCT 1033
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 601 TGTGGAAACTCCGGGATGGAAGTTTGTTTAGATCTTTGCAACTTCAATGCTCATCCTTCT 660
Query 1034 CTTGTGGTTCGTGACTCGGTACACGTATTACCTCAAGAAATGCTAGGTATATCGACTTTC 1093
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTGTGGTTCGTGACTCGGTGCACGTATTACCTCAAGAAATGCTAGGTATATCGACTTTC 720
Query 1094 GGGATATCCACGAGCCTGCTCAAGTGGTTTCCAGTGCACGTGGTGGACCGGTTCTTGTTA 1153
|||||||||||||||||||| || |||||||||||||| ||||| |||| ||||||||||
Sbjct 721 GGGATATCCACGAGCCTGCTAAAATGGTTTCCAGTGCAAGTGGTCGACCAGTTCTTGTTA 780
Query 1154 CGTATGTCTCGGTTGGTTCTTGGTGACACGGATCGGTTAGGGTTAGTTCGACCAAAACTT 1213
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 CGTATGTCTCGGTTGGTTCTTGGTGACACGGATCGGTTAGGATTAGTTCGACCAAAACTT 840
Query 1214 GGCCCTCTTGAACGCAAGATCAAATGCGGAAAGACTCCTGTTTTGGACGTTGGCACTCTT 1273
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 841 GGCCCTCTTGAACGCAAGATCAAGTGCGGAAAGACTCCTGTTTTGGACGTTGGTACTCTG 900
Query 1274 GCCAAAATCCGAAGTGGACACATCAAGGTGTATCCGGAGTTGAAACGGGTAATGCATTAT 1333
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 901 GCCAAAATCCGAAGTGGACACATCAAGGTGTATCCGGAGTTAAAACGAGTAATGCATTAT 960
Query 1334 TCGGCAGAGTTTGTTGATGGGAGAGTAGATAACTTCGACGCCATTATACTCGCCACGGGT 1393
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 961 TCGGCAGAGTTTGTTGATGGGAGAGTAGATAACTTCGACGCGATTATACTCGCTACGGGC 1020
Query 1394 TACAAAAGCAACGTACCCATGTGGCTAAAGGGAGTGAACATGTTTTCTGAGAAAGATGGA 1453
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1021 TACAAAAGCAACGTACCCATGTGGCTAAAGGGAATGAACATGTTTTGTGAGAAAGATGGA 1080
Query 1454 TTTCCGCATAAACCATTTCCTAACGGTTGGAAAGGCGAAAGCGGATTGTATGCAGTCGGT 1513
|||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTTCCGTATAAACCCTTTCCTAATGGTTGGAAAGGCGAAAGCGGATTGTATGCAGTCGGT 1140
Query 1514 TTCACAAAGCTTGGATTGCTTGGTGCAGCCATTGATGCCAAGAAGATCGCTGAGGATATT 1573
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 TTCACAAAGCTTGGATTACTTGGTGCAGCCATTGATGCCAAGAAGATCGCCGAGGATATT 1200
Query 1574 GAGGTTCAACGACATTTCTTACCATTGGCTCGTCCTCAACATTGTTAA 1621
|| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1201 GAAGTTCAACGAAATTTCTTACCATTGGCTCGTCCTCAACATTGTTAA 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69209975165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5