BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G13263.1

Length=557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497061 jgi|Araly1|497061|fgenesh2_kg.9__26__AT4G13261.1           588    2e-167


> Ahg497061 jgi|Araly1|497061|fgenesh2_kg.9__26__AT4G13261.1
Length=396

 Score =  588 bits (318),  Expect = 2e-167
 Identities = 372/398 (93%), Gaps = 4/398 (1%)
 Strand=Plus/Plus

Query  52   ATGGCTTGTCCAATTTTCTCCCAGGAGATACATGAAGATGTAGCCATATCTCCAACTCCA  111
            |||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||
Sbjct  1    ATGGCTCGTCCAATTTTTTCCCAGGAGGTACATGAAGATGTAGTCATATCTCCAACTCCA  60

Query  112  TTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTTCCCCATTACTCGCAA  171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTTCCCCATTACTCGCAA  120

Query  172  AAAGTG-TTCGATTTTCTTGAGACTTGCGCTGAAAAGCCGAGCTCCATATGCGGAGGTGA  230
            |||| | || ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  121  AAAGAGATT-GATTTTCTTAAGGCTTGCGCTGAAAAGCCGAGCTCCATATGCGGAGGTGA  179

Query  231  GATTTTCCAGAACGTGTTGGATGC-AACAACCTTAGTGACAGATAAATGTTGTCGTGATA  289
            |||||||||||||||||||||||  || ||||| |||||||||| |||||||||||||||
Sbjct  180  GATTTTCCAGAACGTGTTGGATGAGAAAAACCT-AGTGACAGATGAATGTTGTCGTGATA  238

Query  290  TATTGAAGATTGGCAAAGATTGCCATCTTGGTTTGATTAAAATCTTCTTCTCATCGTATG  349
            |||||||||||||||||||||||||||| || |||||||||||| | ||||| |||||||
Sbjct  239  TATTGAAGATTGGCAAAGATTGCCATCTCGGATTGATTAAAATCATATTCTCGTCGTATG  298

Query  350  AATATAAAAATATTGCATCTATTCCAAGAAGCAAACAGACATGGAACGATTGTTTCCGTA  409
            | ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct  299  AGTATAAAAATATTGCATCTATTCCAAGAAGCAAACAAACATGGAACGATTGTGTCCGTA  358

Query  410  GAGTTGGAAGCAAGATTGGTGTTCCGGTCTCTATTGAA  447
            ||||||| ||||||||||| | |||||||||| |||||
Sbjct  359  GAGTTGGGAGCAAGATTGGAGCTCCGGTCTCTTTTGAA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20336928937


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5